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Commit 95d87172 authored by Fabrice Daian's avatar Fabrice Daian
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# Code, Models & Data Repository # µPIX Repository
## *μPIX : Leveraging Generative AI for Enhanced, Personalized and Sustainable Microscopy*
### ```Paper```
### μPIX : Leveraging Generative AI for Enhanced, Personalized and Sustainable Microscopy*
#### Gabriel Bon, Daniel Sapede, Cédric Matthews, and Fabrice Daian #### Gabriel Bon, Daniel Sapede, Cédric Matthews, and Fabrice Daian
Preprint BioRXiv [![DOI:10.1101/2024.10.25.620201](images/badge_preprint_mupix.svg)](https://doi.org/10.1101/2024.10.25.620201) #### Preprint BioRXiv [![DOI:10.1101/2024.10.25.620201](images/badge_preprint_mupix.svg)](https://doi.org/10.1101/2024.10.25.620201)
#### ```Dataset & pre-trained µPIX Models``` ### ```Dataset & pre-trained µPIX Models```
| | Dataset | Pre-trained µPIX Models | | | Dataset | Pre-trained µPIX Models |
|--------------------------|--------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------| |--------------------------|--------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------|
| ```csbdeep``` | [download](https://sync.lis-lab.fr/index.php/s/sy3SrGgqNafbP5X/download) | [download](https://sync.lis-lab.fr/index.php/s/riqZbKBbYwjLK4m/download) | | ```csbdeep``` | [download](https://sync.lis-lab.fr/index.php/s/sy3SrGgqNafbP5X/download) | [download](https://sync.lis-lab.fr/index.php/s/riqZbKBbYwjLK4m/download) |
...@@ -13,14 +15,14 @@ Preprint BioRXiv [![DOI:10.1101/2024.10.25.620201](images/badge_preprint_mupix.s ...@@ -13,14 +15,14 @@ Preprint BioRXiv [![DOI:10.1101/2024.10.25.620201](images/badge_preprint_mupix.s
#### ```Demo Notebooks on Google Colab``` ### ```Demo Notebooks on Google Colab```
| | | | | | | |
|---|---|---| |---|---|---|
| **Use case #1** | Use a pre-trained µPIX model to denoise an image dataset (```metrology``` dataset) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1EbV04iv141q7ebVUOErJupYboaCV40OD?usp=drive_link) | **Use case #1** | Use a pre-trained µPIX model to denoise an image dataset (```metrology``` dataset) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1EbV04iv141q7ebVUOErJupYboaCV40OD?usp=drive_link)
| **Use case #2** | Train a µPIX model from scratch using a custom dataset (```metrology``` dataset) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1GaD6rjWGJsBr2dFy-WPLC3YjCZO4LJGl?usp=drive_link) | **Use case #2** | Train a µPIX model from scratch using a custom dataset (```metrology``` dataset) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1GaD6rjWGJsBr2dFy-WPLC3YjCZO4LJGl?usp=drive_link)
#### ```Reproducibility ``` ### ```Reproducibility ```
| | | | | |
|---|---| |---|---|
|**Ready-to-use Notebook supporting Tables and Figures presented in the paper** |[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1x1NtdC0b-vgsjWv0oUbeRzDLmDwv6NiV?usp=drive_link)| |**Ready-to-use Notebook supporting Tables and Figures presented in the paper** |[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1x1NtdC0b-vgsjWv0oUbeRzDLmDwv6NiV?usp=drive_link)|
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