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Commit 48ded44d authored by Loïc Lehnhoff's avatar Loïc Lehnhoff
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Improved user experience 

+Added matplotlib.pyplot shortcuts
parent 89f35aab
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PyAVA.py
+ 6
− 4
View file @ 48ded44d
...@@ -9,7 +9,7 @@ from args import fetch_inputs ...@@ -9,7 +9,7 @@ from args import fetch_inputs
##### MAIN ##### ##### MAIN #####
if __name__ == '__main__': if __name__ == '__main__':
# fetching inputs. # fetching inputs.
dir_explore, max_traj, new_sr, output, modify, initial_basename = fetch_inputs() dir_explore, max_traj, new_sr, output, modify, initial_basename, parameters = fetch_inputs()
if modify: if modify:
with open(os.path.join(output, modify), "r") as f: with open(os.path.join(output, modify), "r") as f:
...@@ -21,10 +21,11 @@ if __name__ == '__main__': ...@@ -21,10 +21,11 @@ if __name__ == '__main__':
new_sr, new_sr,
output, output,
os.path.join(dir_explore, initial_basename), os.path.join(dir_explore, initial_basename),
coords_to_change) coords_to_change,
parameters)
else: else:
# open explorer to select firt file # open explorer to select first file
groot = Tk() groot = Tk()
initial_file = FileExplorer(dir_explore).file initial_file = FileExplorer(dir_explore).file
groot.quit() groot.quit()
...@@ -37,4 +38,5 @@ if __name__ == '__main__': ...@@ -37,4 +38,5 @@ if __name__ == '__main__':
max_traj, max_traj,
new_sr, new_sr,
output, output,
initial_file) initial_file,
overwrite_parameters=parameters)
README.md
+ 7
− 4
View file @ 48ded44d
...@@ -9,6 +9,7 @@ ...@@ -9,6 +9,7 @@
## Features ## Features
- [x] Same tools as matplotlib.pyplot plots.
- [x] Spectrogram contour annotations. - [x] Spectrogram contour annotations.
- [x] Spectrogram automatically computed from waveform. - [x] Spectrogram automatically computed from waveform.
- [x] Choose custom spectrogram resolutions (fft, hop length, clipping dB value and PCEN). - [x] Choose custom spectrogram resolutions (fft, hop length, clipping dB value and PCEN).
...@@ -37,13 +38,15 @@ Run `$python PyAVA.py --help` for details. ...@@ -37,13 +38,15 @@ Run `$python PyAVA.py --help` for details.
The annotations are saved in [JSON](http://www.json.org/) files. Each file contains a dictionnary with the categories annotated. For each category there is a list of points, each point is defined by a list of two elements : [time (in sec), frequency (in Hz)]. The annotations are saved in [JSON](http://www.json.org/) files. Each file contains a dictionnary with the categories annotated. For each category there is a list of points, each point is defined by a list of two elements : [time (in sec), frequency (in Hz)].
### User actions ### User actions
- Use the toolbar to interact with the plot (same as with matplotlib.pyplot). - Use the toolbar to interact with the plot (same as with matplotlib.pyplot)
- Shortcuts "p" and "w" to activate panning, "z" to activate zoom.
- Draw lines : - Draw lines :
- User must not have any toolbar item selected in order to annotate the spectrogram. - User must not have any toolbar item selected in order to annotate the spectrogram.
- Left-click on a name in the listbox to activate annotation with it. - Left-click on a name in the listbox to activate annotation with it.
- Left-click to place a point from the selected category. - Right-click on a name in the listbox to rename it.
- Right-click to remove the nearest point from the selected category. - Left-click on spectrogram to place a point from the selected category.
- Mouse wheel click on a point to move it around. - Right-click on spectrogram to remove the nearest point from the selected category.
- Mouse wheel click on a point on spectrogram to move it around.
- Click on `Open file explorer` Button to change Wavefile used as base (will end the annotation of the current file). - Click on `Open file explorer` Button to change Wavefile used as base (will end the annotation of the current file).
- Change resolution of the spectrogram with `FFT`, `Hop length` and `clipping fields`. - Change resolution of the spectrogram with `FFT`, `Hop length` and `clipping fields`.
- Click on `Update display` button to validate inputs. - Click on `Update display` button to validate inputs.
......
args.py
+ 18
− 7
View file @ 48ded44d
...@@ -56,13 +56,11 @@ def fetch_inputs(): ...@@ -56,13 +56,11 @@ def fetch_inputs():
parser.add_argument( parser.add_argument(
'-max', '--max_contours', '-max', '--max_contours',
type=int, type=int,
default=15, default=1,
nargs='?', nargs='?',
required=False, required=False,
help=("Number of contours that can be annotated at the same time." help=("Default number of contours available at launcg."
"\nDue to restrictions with the module used," "\nDue to restrictions with the module used, max number of contours is 99 per file.\n\n")
"\nonly a fixed number of contours can be annotated at once."
"\nValue cannot exceed 50. Default value is '15'.\n\n")
) )
parser.add_argument( parser.add_argument(
...@@ -92,11 +90,21 @@ def fetch_inputs(): ...@@ -92,11 +90,21 @@ def fetch_inputs():
type=str, type=str,
nargs=2, nargs=2,
required=False, required=False,
help=("Name of a file generated by a previous annitation," help=("Name of a file generated by a previous annotation,"
"\nand name of the associated wavefile." "\nand name of the associated wavefile."
"\nThis will open the interface with the contours from this file" "\nThis will open the interface with the contours from this file"
"\nand enable modification of these contours.")) "\nand enable modification of these contours."))
parser.add_argument(
'-p', '--parameters',
type=str,
nargs="?",
required=False,
default=None,
help=("Path to a file with spectrogram parameters."
"\nMust come from a previous usage of PyAVA."
"\nParameters loaded from this file will overwrite default parameters."))
# fetching arguments # fetching arguments
args = parser.parse_args() args = parser.parse_args()
outputs = args.output outputs = args.output
...@@ -113,6 +121,9 @@ def fetch_inputs(): ...@@ -113,6 +121,9 @@ def fetch_inputs():
try: try:
assert (os.path.exists(outputs)), ( assert (os.path.exists(outputs)), (
f"\nInputError: Could not find dir '{outputs}'.") f"\nInputError: Could not find dir '{outputs}'.")
if isinstance(args.parameters, str):
assert (os.path.exists(args.parameters)), (
f"\nInputError: Could not find dir '{args.parameters}'.")
assert (os.path.exists(explore)), ( assert (os.path.exists(explore)), (
f"\nInputError: Could not find dir '{explore}'.") f"\nInputError: Could not find dir '{explore}'.")
if modify_file: if modify_file:
...@@ -126,7 +137,7 @@ def fetch_inputs(): ...@@ -126,7 +137,7 @@ def fetch_inputs():
print(e) print(e)
sys.exit(1) sys.exit(1)
return (explore, contour, resampl, outputs, modify_file, from_wav) return (explore, contour, resampl, outputs, modify_file, from_wav, args.parameters)
# if running `$python ARGS.py -h` for help. # if running `$python ARGS.py -h` for help.
if __name__ == '__main__': if __name__ == '__main__':
......
interface.py
+ 151
− 43
View file @ 48ded44d
##### IMPORTATIONS ##### ##### IMPORTATIONS #####
import os import os
import json
import numpy as np import numpy as np
from tkinter import * from tkinter import *
from tkinter import simpledialog as sd
from tkinter import filedialog as fd from tkinter import filedialog as fd
from tkinter import ttk from tkinter import ttk
from matplotlib.backends.backend_tkagg import (NavigationToolbar2Tk, from matplotlib.backends.backend_tkagg import (NavigationToolbar2Tk,
...@@ -153,6 +155,8 @@ class App(object): ...@@ -153,6 +155,8 @@ class App(object):
coords_to_modify : dict coords_to_modify : dict
Coordinates of points (from a previous annotation) that can be used Coordinates of points (from a previous annotation) that can be used
as input to add modifications. as input to add modifications.
overwrite_parameters : str
Path to a file containing parameters to overwrite before launch
Attributes Attributes
---------- ----------
...@@ -236,8 +240,10 @@ class App(object): ...@@ -236,8 +240,10 @@ class App(object):
Loads default variables to local variables. Loads default variables to local variables.
submit(): submit():
Loads user inputs to local variables. Loads user inputs to local variables.
switch(self) switch()
Updates spectrogram displayed to PCEN (and conversely). Updates spectrogram displayed to PCEN (and conversely).
_rename_label(event):
A function to manually rename an item in listbox
_frame_listbox_scroll(): _frame_listbox_scroll():
Just a callable part of layout() Just a callable part of layout()
_quit(): _quit():
...@@ -255,7 +261,8 @@ class App(object): ...@@ -255,7 +261,8 @@ class App(object):
NEW_SR, NEW_SR,
DIR_OUT, DIR_OUT,
WAVEFILE, WAVEFILE,
coords_to_modify={}): coords_to_modify={},
overwrite_parameters=None):
# init variables # init variables
self.DIR = DIR self.DIR = DIR
...@@ -265,12 +272,27 @@ class App(object): ...@@ -265,12 +272,27 @@ class App(object):
self.WAVEFILE = WAVEFILE self.WAVEFILE = WAVEFILE
self.NAME0 = 0 self.NAME0 = 0
self.NAME1 = MAX_C self.NAME1 = MAX_C
self.setup() self._default_pcen = False
# load audio data # check if parameters should be overwritten
self.load_audio() if isinstance(overwrite_parameters, str):
with open(os.path.join(self.DIR_OUT, "..","last-parameters-used.json"), "r") as f:
parameter_dict = json.load(f)
self._default_hop_length = parameter_dict["HOP_LENGTH"]
self._default_nfft = parameter_dict["NFFT"]
self._default_clipping = parameter_dict["CLIPPING"]
self.NEW_SR = parameter_dict["SR"]
self._default_pcen = parameter_dict["PCEN"]
if self._default_pcen:
self.initial_text_pcen = "Switch to PCEN"
else:
self.initial_text_pcen = "Switch to Spectrogram"
# init interface # init interface
self.setup()
self.load_audio()
self.root = Tk() self.root = Tk()
self.root.style = ttk.Style() self.root.style = ttk.Style()
self.root.style.theme_use('clam') self.root.style.theme_use('clam')
...@@ -288,8 +310,7 @@ class App(object): ...@@ -288,8 +310,7 @@ class App(object):
self.layout() self.layout()
self.axis.set_position(self._default_bounds) self.axis.set_position(self._default_bounds)
# To avoid probles, disconnect matplotlib keypress # To avoid problems, disconnect matplotlib keypress
# and replace it with tkinter keypress.
self.figure.canvas.mpl_disconnect(self.klicker.key_press) self.figure.canvas.mpl_disconnect(self.klicker.key_press)
self.root.bind('<Key>', self.get_key_pressed) self.root.bind('<Key>', self.get_key_pressed)
...@@ -390,15 +411,17 @@ class App(object): ...@@ -390,15 +411,17 @@ class App(object):
""" """
class EmptyObject(object): class EmptyObject(object):
""" """
Empty class that is just a hacky of creating an object that Empty class that is just a hacky way of creating an object
can be used in matplotlib. that can be used in matplotlib.
""" """
pass pass
# create key attribute and use it # create key attribute and use it
dummy_event = EmptyObject() dummy_event = EmptyObject()
dummy_event.key = event.char dummy_event.key = event.char
self.klicker.get_key_event(dummy_event, show=False)
if dummy_event.key=="A":
self.klicker.add_category(False)
# if a category is added. Update listbox and canvas. # if a category is added. Update listbox and canvas.
if len(self.klicker.legend_labels) > self.listbox.size(): if len(self.klicker.legend_labels) > self.listbox.size():
...@@ -423,6 +446,12 @@ class App(object): ...@@ -423,6 +446,12 @@ class App(object):
self.axis.set_position(self._default_bounds) self.axis.set_position(self._default_bounds)
self.figure.canvas.draw() self.figure.canvas.draw()
elif dummy_event.key=="p" or dummy_event.key=="w":
self.toolbar.pan()
elif dummy_event.key=="z":
self.toolbar.zoom()
def layout(self): def layout(self):
""" """
This *long* function lays the structure of the tkinter interface This *long* function lays the structure of the tkinter interface
...@@ -450,7 +479,7 @@ class App(object): ...@@ -450,7 +479,7 @@ class App(object):
self.list_label = Label( self.list_label = Label(
self.root, self.root,
width=self._default_left_panel_width, width=self._default_left_panel_width,
text='Pick a line to draw.\n(Shift+a adds a new line)', text='Pick a line to draw.\n(Shift+a adds a new line\nRight-click to rename item)',
font=('calibre',10,'bold')) font=('calibre',10,'bold'))
self.list_label.grid(row=2, column=0) self.list_label.grid(row=2, column=0)
...@@ -522,7 +551,7 @@ class App(object): ...@@ -522,7 +551,7 @@ class App(object):
self.switch_view_button = Button( self.switch_view_button = Button(
self.root, self.root,
text="Switch to PCEN", text=self.initial_text_pcen,
width=self._default_left_panel_width, width=self._default_left_panel_width,
command=self.switch) command=self.switch)
self.switch_view_button.grid(row=13, column=0) self.switch_view_button.grid(row=13, column=0)
...@@ -559,8 +588,6 @@ class App(object): ...@@ -559,8 +588,6 @@ class App(object):
Changes the focus to be on a new category, corresponding to Changes the focus to be on a new category, corresponding to
the selected item in listbox widget. the selected item in listbox widget.
...
Parameters Parameters
---------- ----------
event : tkinter object event : tkinter object
...@@ -720,6 +747,85 @@ class App(object): ...@@ -720,6 +747,85 @@ class App(object):
vmax=np.nanmax(self.spectrogram)) vmax=np.nanmax(self.spectrogram))
self.canvas.draw() self.canvas.draw()
def _rename_label(self, event):
"""
A function that allows the user to rename a category
Parameters
----------
event : tkinter object
event containing the item clicked in listbox widget.
Returns
-------
None : Shows a popup that ask for the name to give to the contour.
"""
self.listbox.selection_clear(0,END)
index_item = self.listbox.nearest(event.y)
save_config = self.listbox.itemconfig(index_item)
save_config = {
'bg':save_config['background'][-1],
'selectbackground':save_config['selectbackground'][-1],
'selectforeground':save_config['selectforeground'][-1],
}
# update selection
self.klicker.current_line = index_item
self.listbox.select_clear(0, END)
self.listbox.select_set(index_item)
self.listbox.see(index_item)
self.listbox.activate(index_item)
self.listbox.selection_anchor(index_item)
# get new name from user
new_name = sd.askstring(
"Rename window",
f"Insert new name for '{self.klicker.legend_labels[index_item]}':"
)
if isinstance(new_name, str):
if new_name in self.klicker.legend_labels:
count=0
for label in self.klicker.legend_labels:
if (label==new_name) or ("_".join(label.split("_")[:-1])==new_name):
count+=1
new_name = new_name + f"_{count}"
# replace spaces
new_name = new_name.replace(" ", "_")
# destroy item
self.listbox.delete(
index_item)
old_name = self.klicker.legend_labels.pop(index_item)
# handle klicker
self.klicker.legend_labels.insert(index_item, new_name)
self.klicker.set_legend()
self.klicker.current_line = index_item
if old_name in self.klicker.coords.keys():
self.klicker.coords[new_name] = self.klicker.coords.pop(old_name)
self.klicker.update_lines()
# insert item at the same index in listbox, with new name
self.listbox.insert(
index_item,
new_name)
self.listbox.itemconfig(
index_item,
save_config
)
# update selection
self.listbox.select_clear(0, END)
self.listbox.select_set(index_item)
self.listbox.see(index_item)
self.listbox.activate(index_item)
self.listbox.selection_anchor(index_item)
self.axis.set_position(self._default_bounds)
self.figure.canvas.draw()
def _frame_listbox_scroll(self): def _frame_listbox_scroll(self):
""" """
Just a callable part of "layout" Just a callable part of "layout"
...@@ -746,6 +852,7 @@ class App(object): ...@@ -746,6 +852,7 @@ class App(object):
'selectforeground': 'white'}) 'selectforeground': 'white'})
self.listbox.pack(side="left", fill="y") self.listbox.pack(side="left", fill="y")
self.listbox.bind("<<ListboxSelect>>", self.link_select) self.listbox.bind("<<ListboxSelect>>", self.link_select)
self.listbox.bind("<Button-3>", self._rename_label)
self.listbox.select_set(0) self.listbox.select_set(0)
self.scrollbar = Scrollbar(self.frame_list, orient="vertical") self.scrollbar = Scrollbar(self.frame_list, orient="vertical")
...@@ -756,6 +863,7 @@ class App(object): ...@@ -756,6 +863,7 @@ class App(object):
def _quit(self): def _quit(self):
""" """
A function that saves coordinates of lines before closing app. A function that saves coordinates of lines before closing app.
Also saves the last parameters in memory (for further use).
... ...
...@@ -778,8 +886,8 @@ class App(object): ...@@ -778,8 +886,8 @@ class App(object):
"HOP_LENGTH":self.HOP_LENGTH, "HOP_LENGTH":self.HOP_LENGTH,
"CLIPPING":self.CLIPPING "CLIPPING":self.CLIPPING
}, },
os.path.join(self.DIR_OUT, "parameters"), os.path.join(self.DIR_OUT, ".."),
os.path.basename(self.WAVEFILE)[:-4]+"-params.json" "last-parameters-used.json"
) )
# quit window # quit window
......
last-parameters-used.json 0 → 100644
+ 7
− 0
View file @ 48ded44d
{
"PCEN": false,
"SR": 96000,
"NFFT": 2048,
"HOP_LENGTH": 512,
"CLIPPING": -80
}
\ No newline at end of file
line_clicker/__pycache__/line_clicker.cpython-39.pyc
+ 0
− 0
View file @ 48ded44d
No preview for this file type
outputs/SCW1807_20200713_064554-contours.json
+ 124
− 822
View file @ 48ded44d
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