diff --git a/PyAVA.py b/PyAVA.py
index 98c0d3b2d98a74934804a948e46fb0df82f42121..d1dfe3011bc8848ecd7c962d5256b5a9fa8a11cb 100644
--- a/PyAVA.py
+++ b/PyAVA.py
@@ -9,7 +9,7 @@ from args import fetch_inputs
##### MAIN #####
if __name__ == '__main__':
# fetching inputs.
- dir_explore, max_traj, new_sr, output, modify, initial_basename = fetch_inputs()
+ dir_explore, max_traj, new_sr, output, modify, initial_basename, parameters = fetch_inputs()
if modify:
with open(os.path.join(output, modify), "r") as f:
@@ -21,10 +21,11 @@ if __name__ == '__main__':
new_sr,
output,
os.path.join(dir_explore, initial_basename),
- coords_to_change)
+ coords_to_change,
+ parameters)
else:
- # open explorer to select firt file
+ # open explorer to select first file
groot = Tk()
initial_file = FileExplorer(dir_explore).file
groot.quit()
@@ -37,4 +38,5 @@ if __name__ == '__main__':
max_traj,
new_sr,
output,
- initial_file)
+ initial_file,
+ overwrite_parameters=parameters)
diff --git a/README.md b/README.md
index 71d8638b09ee48978881a4874e8e8b6d989f2725..f7fba7b3bcaa1951730a84a177ebf6c4fb7c9bc3 100644
--- a/README.md
+++ b/README.md
@@ -9,6 +9,7 @@
## Features
+- [x] Same tools as matplotlib.pyplot plots.
- [x] Spectrogram contour annotations.
- [x] Spectrogram automatically computed from waveform.
- [x] Choose custom spectrogram resolutions (fft, hop length, clipping dB value and PCEN).
@@ -37,13 +38,15 @@ Run `$python PyAVA.py --help` for details.
The annotations are saved in [JSON](http://www.json.org/) files. Each file contains a dictionnary with the categories annotated. For each category there is a list of points, each point is defined by a list of two elements : [time (in sec), frequency (in Hz)].
### User actions
-- Use the toolbar to interact with the plot (same as with matplotlib.pyplot).
+- Use the toolbar to interact with the plot (same as with matplotlib.pyplot)
+- Shortcuts "p" and "w" to activate panning, "z" to activate zoom.
- Draw lines :
- User must not have any toolbar item selected in order to annotate the spectrogram.
- Left-click on a name in the listbox to activate annotation with it.
- - Left-click to place a point from the selected category.
- - Right-click to remove the nearest point from the selected category.
- - Mouse wheel click on a point to move it around.
+ - Right-click on a name in the listbox to rename it.
+ - Left-click on spectrogram to place a point from the selected category.
+ - Right-click on spectrogram to remove the nearest point from the selected category.
+ - Mouse wheel click on a point on spectrogram to move it around.
- Click on `Open file explorer` Button to change Wavefile used as base (will end the annotation of the current file).
- Change resolution of the spectrogram with `FFT`, `Hop length` and `clipping fields`.
- Click on `Update display` button to validate inputs.
diff --git a/args.py b/args.py
index 36389f18906445c47784a568dee672db0833c144..4c34ade6aa83816000d6417fd6c21c0e630d4640 100644
--- a/args.py
+++ b/args.py
@@ -56,13 +56,11 @@ def fetch_inputs():
parser.add_argument(
'-max', '--max_contours',
type=int,
- default=15,
+ default=1,
nargs='?',
required=False,
- help=("Number of contours that can be annotated at the same time."
- "\nDue to restrictions with the module used,"
- "\nonly a fixed number of contours can be annotated at once."
- "\nValue cannot exceed 50. Default value is '15'.\n\n")
+ help=("Default number of contours available at launcg."
+ "\nDue to restrictions with the module used, max number of contours is 99 per file.\n\n")
)
parser.add_argument(
@@ -92,11 +90,21 @@ def fetch_inputs():
type=str,
nargs=2,
required=False,
- help=("Name of a file generated by a previous annitation,"
+ help=("Name of a file generated by a previous annotation,"
"\nand name of the associated wavefile."
"\nThis will open the interface with the contours from this file"
"\nand enable modification of these contours."))
+ parser.add_argument(
+ '-p', '--parameters',
+ type=str,
+ nargs="?",
+ required=False,
+ default=None,
+ help=("Path to a file with spectrogram parameters."
+ "\nMust come from a previous usage of PyAVA."
+ "\nParameters loaded from this file will overwrite default parameters."))
+
# fetching arguments
args = parser.parse_args()
outputs = args.output
@@ -113,6 +121,9 @@ def fetch_inputs():
try:
assert (os.path.exists(outputs)), (
f"\nInputError: Could not find dir '{outputs}'.")
+ if isinstance(args.parameters, str):
+ assert (os.path.exists(args.parameters)), (
+ f"\nInputError: Could not find dir '{args.parameters}'.")
assert (os.path.exists(explore)), (
f"\nInputError: Could not find dir '{explore}'.")
if modify_file:
@@ -126,7 +137,7 @@ def fetch_inputs():
print(e)
sys.exit(1)
- return (explore, contour, resampl, outputs, modify_file, from_wav)
+ return (explore, contour, resampl, outputs, modify_file, from_wav, args.parameters)
# if running `$python ARGS.py -h` for help.
if __name__ == '__main__':
diff --git a/interface.py b/interface.py
index a6c01f1f0b86b7c2214ffa6546cb9b5cc6dff175..9ebcfa6bed8a76699f6536f4e9f904d27c289431 100644
--- a/interface.py
+++ b/interface.py
@@ -1,7 +1,9 @@
##### IMPORTATIONS #####
import os
+import json
import numpy as np
from tkinter import *
+from tkinter import simpledialog as sd
from tkinter import filedialog as fd
from tkinter import ttk
from matplotlib.backends.backend_tkagg import (NavigationToolbar2Tk,
@@ -153,6 +155,8 @@ class App(object):
coords_to_modify : dict
Coordinates of points (from a previous annotation) that can be used
as input to add modifications.
+ overwrite_parameters : str
+ Path to a file containing parameters to overwrite before launch
Attributes
----------
@@ -236,8 +240,10 @@ class App(object):
Loads default variables to local variables.
submit():
Loads user inputs to local variables.
- switch(self)
+ switch()
Updates spectrogram displayed to PCEN (and conversely).
+ _rename_label(event):
+ A function to manually rename an item in listbox
_frame_listbox_scroll():
Just a callable part of layout()
_quit():
@@ -255,7 +261,8 @@ class App(object):
NEW_SR,
DIR_OUT,
WAVEFILE,
- coords_to_modify={}):
+ coords_to_modify={},
+ overwrite_parameters=None):
# init variables
self.DIR = DIR
@@ -265,12 +272,27 @@ class App(object):
self.WAVEFILE = WAVEFILE
self.NAME0 = 0
self.NAME1 = MAX_C
- self.setup()
-
- # load audio data
- self.load_audio()
+ self._default_pcen = False
+
+ # check if parameters should be overwritten
+ if isinstance(overwrite_parameters, str):
+ with open(os.path.join(self.DIR_OUT, "..","last-parameters-used.json"), "r") as f:
+ parameter_dict = json.load(f)
+
+ self._default_hop_length = parameter_dict["HOP_LENGTH"]
+ self._default_nfft = parameter_dict["NFFT"]
+ self._default_clipping = parameter_dict["CLIPPING"]
+ self.NEW_SR = parameter_dict["SR"]
+ self._default_pcen = parameter_dict["PCEN"]
+
+ if self._default_pcen:
+ self.initial_text_pcen = "Switch to PCEN"
+ else:
+ self.initial_text_pcen = "Switch to Spectrogram"
# init interface
+ self.setup()
+ self.load_audio()
self.root = Tk()
self.root.style = ttk.Style()
self.root.style.theme_use('clam')
@@ -288,9 +310,8 @@ class App(object):
self.layout()
self.axis.set_position(self._default_bounds)
- # To avoid probles, disconnect matplotlib keypress
- # and replace it with tkinter keypress.
- self.figure.canvas.mpl_disconnect(self.klicker.key_press)
+ # To avoid problems, disconnect matplotlib keypress
+ self.figure.canvas.mpl_disconnect(self.klicker.key_press)
self.root.bind('<Key>', self.get_key_pressed)
# just to be sure
@@ -390,39 +411,47 @@ class App(object):
"""
class EmptyObject(object):
"""
- Empty class that is just a hacky of creating an object that
- can be used in matplotlib.
+ Empty class that is just a hacky way of creating an object
+ that can be used in matplotlib.
"""
pass
# create key attribute and use it
dummy_event = EmptyObject()
dummy_event.key = event.char
- self.klicker.get_key_event(dummy_event, show=False)
-
- # if a category is added. Update listbox and canvas.
- if len(self.klicker.legend_labels) > self.listbox.size():
- self.listbox.insert(
- self.listbox.size(),
- self.klicker.legend_labels[-1])
- self.listbox.itemconfig(
- self.listbox.size()-1,
- {
- 'bg': self.klicker.colors[
- (self.listbox.size()-1)%len(self.klicker.colors)],
- 'selectbackground': mc.to_hex(tuple([min(0.1+x,1)
- for x in mc.to_rgb(
- self.klicker.colors[
- (self.listbox.size()-1)%len(self.klicker.colors)])])),
- 'selectforeground': 'white'})
- self.listbox.select_clear(0, END)
- self.listbox.select_set(self.listbox.size()-1)
- self.listbox.see(self.listbox.size()-1)
- self.listbox.activate(self.listbox.size()-1)
- self.listbox.selection_anchor(self.listbox.size()-1)
- self.axis.set_position(self._default_bounds)
- self.figure.canvas.draw()
+ if dummy_event.key=="A":
+ self.klicker.add_category(False)
+
+ # if a category is added. Update listbox and canvas.
+ if len(self.klicker.legend_labels) > self.listbox.size():
+ self.listbox.insert(
+ self.listbox.size(),
+ self.klicker.legend_labels[-1])
+ self.listbox.itemconfig(
+ self.listbox.size()-1,
+ {
+ 'bg': self.klicker.colors[
+ (self.listbox.size()-1)%len(self.klicker.colors)],
+ 'selectbackground': mc.to_hex(tuple([min(0.1+x,1)
+ for x in mc.to_rgb(
+ self.klicker.colors[
+ (self.listbox.size()-1)%len(self.klicker.colors)])])),
+ 'selectforeground': 'white'})
+ self.listbox.select_clear(0, END)
+ self.listbox.select_set(self.listbox.size()-1)
+ self.listbox.see(self.listbox.size()-1)
+ self.listbox.activate(self.listbox.size()-1)
+ self.listbox.selection_anchor(self.listbox.size()-1)
+ self.axis.set_position(self._default_bounds)
+ self.figure.canvas.draw()
+
+ elif dummy_event.key=="p" or dummy_event.key=="w":
+ self.toolbar.pan()
+
+ elif dummy_event.key=="z":
+ self.toolbar.zoom()
+
def layout(self):
"""
This *long* function lays the structure of the tkinter interface
@@ -450,7 +479,7 @@ class App(object):
self.list_label = Label(
self.root,
width=self._default_left_panel_width,
- text='Pick a line to draw.\n(Shift+a adds a new line)',
+ text='Pick a line to draw.\n(Shift+a adds a new line\nRight-click to rename item)',
font=('calibre',10,'bold'))
self.list_label.grid(row=2, column=0)
@@ -522,7 +551,7 @@ class App(object):
self.switch_view_button = Button(
self.root,
- text="Switch to PCEN",
+ text=self.initial_text_pcen,
width=self._default_left_panel_width,
command=self.switch)
self.switch_view_button.grid(row=13, column=0)
@@ -559,8 +588,6 @@ class App(object):
Changes the focus to be on a new category, corresponding to
the selected item in listbox widget.
- ...
-
Parameters
----------
event : tkinter object
@@ -577,7 +604,7 @@ class App(object):
for legend_line in self.klicker.legend.get_lines():
legend_line.set_alpha(0.2)
self.klicker.legend.get_lines()[self.klicker.current_line].set_alpha(1)
- self.klicker.figure.canvas.draw()
+ self.klicker.figure.canvas.draw()
def load_audio(self):
"""
@@ -720,6 +747,85 @@ class App(object):
vmax=np.nanmax(self.spectrogram))
self.canvas.draw()
+ def _rename_label(self, event):
+ """
+ A function that allows the user to rename a category
+
+ Parameters
+ ----------
+ event : tkinter object
+ event containing the item clicked in listbox widget.
+
+ Returns
+ -------
+ None : Shows a popup that ask for the name to give to the contour.
+ """
+ self.listbox.selection_clear(0,END)
+ index_item = self.listbox.nearest(event.y)
+ save_config = self.listbox.itemconfig(index_item)
+ save_config = {
+ 'bg':save_config['background'][-1],
+ 'selectbackground':save_config['selectbackground'][-1],
+ 'selectforeground':save_config['selectforeground'][-1],
+ }
+
+ # update selection
+ self.klicker.current_line = index_item
+ self.listbox.select_clear(0, END)
+ self.listbox.select_set(index_item)
+ self.listbox.see(index_item)
+ self.listbox.activate(index_item)
+ self.listbox.selection_anchor(index_item)
+
+ # get new name from user
+ new_name = sd.askstring(
+ "Rename window",
+ f"Insert new name for '{self.klicker.legend_labels[index_item]}':"
+ )
+
+ if isinstance(new_name, str):
+ if new_name in self.klicker.legend_labels:
+ count=0
+ for label in self.klicker.legend_labels:
+ if (label==new_name) or ("_".join(label.split("_")[:-1])==new_name):
+ count+=1
+ new_name = new_name + f"_{count}"
+
+ # replace spaces
+ new_name = new_name.replace(" ", "_")
+
+ # destroy item
+ self.listbox.delete(
+ index_item)
+ old_name = self.klicker.legend_labels.pop(index_item)
+
+ # handle klicker
+ self.klicker.legend_labels.insert(index_item, new_name)
+ self.klicker.set_legend()
+ self.klicker.current_line = index_item
+ if old_name in self.klicker.coords.keys():
+ self.klicker.coords[new_name] = self.klicker.coords.pop(old_name)
+ self.klicker.update_lines()
+
+ # insert item at the same index in listbox, with new name
+ self.listbox.insert(
+ index_item,
+ new_name)
+ self.listbox.itemconfig(
+ index_item,
+ save_config
+ )
+
+ # update selection
+ self.listbox.select_clear(0, END)
+ self.listbox.select_set(index_item)
+ self.listbox.see(index_item)
+ self.listbox.activate(index_item)
+ self.listbox.selection_anchor(index_item)
+
+ self.axis.set_position(self._default_bounds)
+ self.figure.canvas.draw()
+
def _frame_listbox_scroll(self):
"""
Just a callable part of "layout"
@@ -745,7 +851,8 @@ class App(object):
self.klicker.colors[idx%len(self.klicker.colors)])])),
'selectforeground': 'white'})
self.listbox.pack(side="left", fill="y")
- self.listbox.bind("<<ListboxSelect>>", self.link_select)
+ self.listbox.bind("<<ListboxSelect>>", self.link_select)
+ self.listbox.bind("<Button-3>", self._rename_label)
self.listbox.select_set(0)
self.scrollbar = Scrollbar(self.frame_list, orient="vertical")
@@ -756,6 +863,7 @@ class App(object):
def _quit(self):
"""
A function that saves coordinates of lines before closing app.
+ Also saves the last parameters in memory (for further use).
...
@@ -778,8 +886,8 @@ class App(object):
"HOP_LENGTH":self.HOP_LENGTH,
"CLIPPING":self.CLIPPING
},
- os.path.join(self.DIR_OUT, "parameters"),
- os.path.basename(self.WAVEFILE)[:-4]+"-params.json"
+ os.path.join(self.DIR_OUT, ".."),
+ "last-parameters-used.json"
)
# quit window
diff --git a/last-parameters-used.json b/last-parameters-used.json
new file mode 100644
index 0000000000000000000000000000000000000000..d56a73d059b5d7033ebfba704db2c51693738e2b
--- /dev/null
+++ b/last-parameters-used.json
@@ -0,0 +1,7 @@
+{
+ "PCEN": false,
+ "SR": 96000,
+ "NFFT": 2048,
+ "HOP_LENGTH": 512,
+ "CLIPPING": -80
+}
\ No newline at end of file
diff --git a/line_clicker/__pycache__/line_clicker.cpython-39.pyc b/line_clicker/__pycache__/line_clicker.cpython-39.pyc
index 4fdac3d06e156ecb3508baef0ebe5e9db968a698..f63f3cb63553a38118e9935f9ef90867132fe0e9 100644
Binary files a/line_clicker/__pycache__/line_clicker.cpython-39.pyc and b/line_clicker/__pycache__/line_clicker.cpython-39.pyc differ
diff --git a/outputs/SCW1807_20200713_064554-contours.json b/outputs/SCW1807_20200713_064554-contours.json
index 55c8c0c2f4e1c0984a983b2fc70e77cbdce1e873..a8e371fae1d370ddd00b7930f2e39e34f9490c10 100644
--- a/outputs/SCW1807_20200713_064554-contours.json
+++ b/outputs/SCW1807_20200713_064554-contours.json
@@ -1,948 +1,250 @@
{
- "Line1": [
+ "invert_N": [
[
- 0.2556607438674337,
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+ 16543.49446379686
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+ "invert_N_1": [
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