Merge branch 'dev' into 'master'

decoder/include/Decoder.hpp

decoder/src/Decoder.cpp

decoder/src/macaon_decode.cpp

maca_common/include/File.hpp

maca_common/include/LimitedArray.hpp

maca_common/include/LimitedStack.hpp

maca_common/include/ProgramOutput.hpp

maca_common/include/ProgramParameters.hpp

maca_common/include/util.hpp

maca_common/src/File.cpp

maca_common/src/ProgramOutput.cpp

maca_common/src/ProgramParameters.cpp

maca_common/src/util.cpp

neural_network/src/MLPBase.cpp

trainer/src/Trainer.cpp

trainer/src/macaon_train.cpp

transition_machine/include/ActionSet.hpp

transition_machine/include/BD.hpp

transition_machine/include/Classifier.hpp

transition_machine/include/Config.hpp