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Commit 3a31c8bc authored by Emmanuel Bruno's avatar Emmanuel Bruno
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adds codeserver and cleans up.

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.gitignore 0 → 100644
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− 0
View file @ 3a31c8bc
notebooks
Dockerfile
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View file @ 3a31c8bc
...@@ -22,11 +22,12 @@ ENV LANG=en_US.UTF-8 \ ...@@ -22,11 +22,12 @@ ENV LANG=en_US.UTF-8 \
# Sets codeserver directories # Sets codeserver directories
ENV CODESERVEREXT_DIR /opt/codeserver/extensions ENV CODESERVEREXT_DIR /opt/codeserver/extensions
ENV CODE_WORKINGDIR $HOME/work/src ENV CODE_WORKINGDIR $HOME/work
ENV CODESERVERDATA_DIR $HOME/work/codeserver/data ENV CODESERVERDATA_DIR $HOME/work/codeserver/data
ENV PATH=/opt/bin:$PATH
# Add conda env hook # Add conda env hook
COPY ./conda-activate.sh /usr/local/bin/before-notebook.d/ # COPY ./conda-activate.sh /usr/local/bin/before-notebook.d/
# RUN jupyter labextension install @jupyterlab/latex doesn't work with lab 3.0 # RUN jupyter labextension install @jupyterlab/latex doesn't work with lab 3.0
# SO we test a fork. TODO: Multistage Build # SO we test a fork. TODO: Multistage Build
...@@ -39,14 +40,17 @@ RUN echo -e "\e[93m***** Install Jupyter Lab Extensions ****\e[38;5;241m" && \ ...@@ -39,14 +40,17 @@ RUN echo -e "\e[93m***** Install Jupyter Lab Extensions ****\e[38;5;241m" && \
jupyterlab-git==0.30.1 \ jupyterlab-git==0.30.1 \
jupyterlab-system-monitor==0.8.0 && \ jupyterlab-system-monitor==0.8.0 && \
conda install defaults::nb_conda_kernels && \ conda install defaults::nb_conda_kernels && \
npm cache clean --force && \
echo -e "\e[93m***** Install Jupyter LaTeX ****\e[38;5;241m" && \ echo -e "\e[93m***** Install Jupyter LaTeX ****\e[38;5;241m" && \
cd /tmp && \
git clone https://github.com/joequant/jupyterlab-latex.git && \ git clone https://github.com/joequant/jupyterlab-latex.git && \
cd jupyterlab-latex && \ cd jupyterlab-latex && \
pip3 install -e . && \ pip3 install -e . && \
jlpm install && \ jlpm install && \
jlpm run build && \ jlpm run build && \
jupyter labextension install . && \ jupyter labextension install . && \
jlpm cache clean && \
cd && \
rm -rf /tmp/jupyterlab-latex && \
echo -e "\e[93m**** Installs Code Server Web ****\e[38;5;241m" && \ echo -e "\e[93m**** Installs Code Server Web ****\e[38;5;241m" && \
curl -fsSL https://code-server.dev/install.sh | sh -s -- --prefix=/opt --method=standalone && \ curl -fsSL https://code-server.dev/install.sh | sh -s -- --prefix=/opt --method=standalone && \
mkdir -p $CODESERVEREXT_DIR && \ mkdir -p $CODESERVEREXT_DIR && \
...@@ -65,6 +69,7 @@ RUN echo -e "\e[93m***** Install Jupyter Lab Extensions ****\e[38;5;241m" && \ ...@@ -65,6 +69,7 @@ RUN echo -e "\e[93m***** Install Jupyter Lab Extensions ****\e[38;5;241m" && \
chmod 770 -R $CODESERVEREXT_DIR && \ chmod 770 -R $CODESERVEREXT_DIR && \
adduser "$NB_USER" codeserver && \ adduser "$NB_USER" codeserver && \
echo -e "\e[93m**** Clean up ****\e[38;5;241m" && \ echo -e "\e[93m**** Clean up ****\e[38;5;241m" && \
npm cache clean --force && \
jupyter lab clean && \ jupyter lab clean && \
fix-permissions $CONDA_DIR && \ fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER fix-permissions /home/$NB_USER
......
code-server/codeserver-jupyter_notebook_config.py 0 → 100644
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import os
import shutil
def _get_code_server_cmd(port):
executable = "code-server"
if not shutil.which(executable):
raise FileNotFoundError("Can not find code-server in PATH")
# Start vscode in CODE_WORKINGDIR env variable if set
# If not, start in 'current directory', which is $REPO_DIR in mybinder
# but /home/jovyan (or equivalent) in JupyterHubs
working_dir = os.getenv("CODE_WORKINGDIR", ".")
extensions_dir = os.getenv("CODESERVEREXT_DIR", None)
extra_extensions_dir = os.getenv("CODE_EXTRA_EXTENSIONSDIR", None)
cmd = [
executable,
"--auth","none",
"--disable-telemetry",
"--user-data-dir",os.getenv("CODESERVERDATA_DIR"),
"--port=" + str(port),
]
if extensions_dir:
cmd += ["--extensions-dir", extensions_dir]
if extra_extensions_dir:
cmd += ["--extra-extensions-dir", extra_extensions_dir]
cmd.append(working_dir)
return cmd
c.ServerProxy.servers = {
'code-server': {
'command': _get_code_server_cmd,
'timeout': 20,
'launcher_entry': {
'title': 'VS Code IDE',
'icon_path': os.path.join(
os.path.dirname(os.path.abspath(__file__)), "icons", "code-server.svg"),
}
}
}
code-server/icons/code-server.svg 0 → 100644
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<?xml version="1.0" encoding="UTF-8"?>
<svg width="1010px" height="1018px" viewBox="0 0 1010 1018" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<title>logo</title>
<defs>
<path d="M543,781.4 C435.5,673.9 346.8,585.5 346,585.1 C344.9,584.5 311.5,610.4 220.7,682.2 L96.9,780.2 L49.2,755.7 L1.5,731.2 L1,489.5 C0.5,248.5 0.5,247.7 2.5,246.5 C3.6,245.8 25.3,234.6 50.7,221.6 L96.9,197.9 L221.1,296.1 L345.3,394.2 L542.1,197.4 L738.9,0.6 L786.2,19.7 C812.2,30.1 866.4,51.9 906.7,68.1 L979.9,97.5 L980,488.7 C980,858.9 979.9,880 978.2,880.9 C975.4,882.4 740.2,977 739.3,977 C738.9,977 650.5,889 543,781.4 Z M737.3,489.8 C737,379.1 736.8,288.2 736.7,287.7 C736.6,287.3 678.5,332.3 607.7,387.6 C536.9,442.9 479.1,488.7 479.3,489.3 C479.7,490.7 735.2,690.8 736.6,690.9 C737.5,691 737.6,639.3 737.3,489.8 Z M170.4,564.5 C210.9,523.5 244,489.5 244,489 C244,488.3 134.3,374.3 103.9,343.5 L96,335.5 L96,487.3 C96,570.7 96.2,639 96.4,639 C96.6,639 129.9,605.5 170.4,564.5 Z" id="path-1"></path>
<mask id="mask-2" maskContentUnits="userSpaceOnUse" maskUnits="objectBoundingBox" x="-15" y="-15" width="1009.27778" height="1006.4">
<rect x="-14.2777778" y="-14.4" width="1009.27778" height="1006.4" fill="white"></rect>
<use xlink:href="#path-1" fill="black"></use>
</mask>
</defs>
<g id="Page-1" stroke="none" stroke-width="1" fill="none" fill-rule="evenodd">
<g id="logo" transform="translate(505.000000, 512.500000) scale(-1, 1) rotate(-180.000000) translate(-505.000000, -512.500000) translate(15.000000, 24.000000)">
<g id="Shape" fill-rule="nonzero">
<use fill="#0060B1" fill-rule="evenodd" xlink:href="#path-1"></use>
<use stroke="#FFFFFF" mask="url(#mask-2)" stroke-width="30" xlink:href="#path-1"></use>
</g>
<path d="M737.3,489.8 C737,379.1 736.8,288.2 736.7,287.7 C736.6,287.3 678.5,332.3 607.7,387.6 C536.9,442.9 479.1,488.7 479.3,489.3 C479.7,490.7 735.2,690.8 736.6,690.9 C737.5,691 737.6,639.3 737.3,489.8 Z" id="Path" fill="#FFFFFF"></path>
<path d="M170.4,564.5 C210.9,523.5 244,489.5 244,489 C244,488.3 134.3,374.3 103.9,343.5 L96,335.5 L96,487.3 C96,570.7 96.2,639 96.4,639 C96.6,639 129.9,605.5 170.4,564.5 Z" id="Path-Copy" fill="#FFFFFF"></path>
</g>
</g>
</svg>
run.sh
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#!/usr/bin/env bash #!/usr/bin/env bash
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
. ${DIR}/env.sh
docker run --rm \ docker run --rm \
--name jupyterjava_${PWD##*/} \ --name jupyterjava_${PWD##*/} \
--volume $PWD/notebooks:/home/jovyan/work \ --volume $PWD/notebooks:/home/jovyan/work \
--publish 8888:8888 \ --publish 8888:8888 \
--env NB_UID=$UID \ --env NB_UID=$UID \
--env JUPYTER_ENABLE_LAB=yes \ --env JUPYTER_ENABLE_LAB=yes \
brunoe/jupyterjava:feature_dockerstack ${BASE}:$SHA
# --env NOTEBOOK_SRC_SUBDIR=${PWD##*/} \
# --volume $PWD/src:/src \
# --volume ~/.m2:/home/jovyan/.m2 \
# --volume $PWD/codeserver:/codeserver \
#--env CHOWN_HOME_OPTS='-R' --env CHOWN_HOME=yes \ #--env CHOWN_HOME_OPTS='-R' --env CHOWN_HOME=yes \
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