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Emmanuel Bruno authored
Dockerfile 7.33 KiB
ARG LAB_BASE=jupyter/minimal-notebook:lab-3.6.2
FROM ${LAB_BASE}
ARG TARGETPLATFORM
ARG DOCKER_CLI_VERSION="23.0.1"
ARG DOCKER_COMPOSE_VERSION="2.17.0"
ARG DOCKER_BUILDX_VERSION="0.10.4"
ARG DOCKER_CONFIG="/usr/local/lib/docker/cli-plugins"
USER root
ARG TARGETPLATFORM
ARG BUILDPLATFORM
RUN echo "I am running on $BUILDPLATFORM, building for $TARGETPLATFORM"
# Sets a cache for pip packages
#ENV PIP_CACHE_DIR=/var/cache/buildkit/pip
ENV PIP_CACHE_DIR=/home/jovyan/work/var/cache/buildkit/pip/${TARGETPLATFORM}
ENV APT_CACHE_DIR=/var/cache/apt/${TARGETPLATFORM}
ENV CONDA_PKG_DIR=/opt/conda/pkgs/${TARGETPLATFORM}
# We need to remove the default `docker-clean` to avoid cache cleaning
RUN mkdir -p ${PIP_CACHE_DIR} && \
mkdir -p ${APT_CACHE_DIR} && \
rm -f /etc/apt/apt.conf.d/docker-clean && \
echo "Dir::Cache::pkgcache ${APT_CACHE_DIR};" > /etc/apt/apt.conf.d/00-move-cache && \
mkdir -p ${CONDA_PKG_DIR} && \
cat /etc/apt/apt.conf.d/00-move-cache
COPY Artefacts/apt_packages /tmp/
RUN --mount=type=cache,target=${APT_CACHE_DIR} \
apt-get update && \
apt-get install -qq --yes --no-install-recommends \
$(cat /tmp/apt_packages) && \
rm -rf /var/lib/apt/lists/*
# Installs only the docker client and docker compose
ENV BIN_DIR=/usr/local/bin
RUN if [ "$TARGETPLATFORM" = "linux/amd64" ]; then \
ARCH_LEG=x86_64; \
ARCH=amd64; \
elif [ "$TARGETPLATFORM" = "linux/arm64/v8" ] || [ "$TARGETPLATFORM" = "linux/arm64" ]; then \
ARCH_LEG=aarch64; \
ARCH=arm64; \
else \
ARCH_LEG=amd64; \
ARCH=amd64; \
fi && \
echo -e "\e[93m**** Installs docker client ****\e[38;5;241m" && \
curl -sL "https://download.docker.com/linux/static/stable/${ARCH_LEG}/docker-${DOCKER_CLI_VERSION}.tgz" | \
tar --directory="${BIN_DIR}" --strip-components=1 -zx docker/docker && \
chmod +x "${BIN_DIR}/docker" && \
mkdir -p "$DOCKER_CONFIG" && \
echo -e "\e[93m**** Installs docker compose ****\e[38;5;241m" && \
curl -sL "https://github.com/docker/compose/releases/download/v${DOCKER_COMPOSE_VERSION}/docker-compose-linux-${ARCH_LEG}" \
-o "$DOCKER_CONFIG/docker-compose" && \
chmod +x "$DOCKER_CONFIG/docker-compose" && \
echo -e "\e[93m**** Installs docker buildx ****\e[38;5;241m" && \
curl -sL "https://github.com/docker/buildx/releases/download/v${DOCKER_BUILDX_VERSION}/buildx-v${DOCKER_BUILDX_VERSION}.linux-${ARCH}" \
-o "$DOCKER_CONFIG/docker-buildx" && \
chmod +x "$DOCKER_CONFIG/docker-buildx"
# Sets Defaults directories
ENV WORK_DIR $HOME/work
ENV NOTEBOOKS_DIR $WORK_DIR/notebooks
ENV DATA_DIR $WORK_DIR/data
# Sets codeserver directories
ENV CODESERVEREXT_DIR /opt/codeserver/extensions
ENV CODE_WORKINGDIR $HOME/work
ENV CODESERVERDATA_DIR $HOME/work/.codeserver/data
ENV PATH=/opt/bin:$PATH
# Enable persistant conda env
COPY condarc /home/jovyan/.condarc
## ZSH Configuration files
ADD zsh/initzsh.sh /tmp/initzsh.sh
ADD zsh/p10k.zsh $HOME/.p10k.zsh
# PIP packages (extensions) for JupyterLab
COPY Artefacts/pip_jupyterlab_packages /tmp/
# Codeserver extensions to install
COPY Artefacts/codeserver_extensions /tmp/
RUN --mount=type=cache,target=${PIP_CACHE_DIR} \
--mount=type=cache,target=${CONDA_PKG_DIR} \
echo -e "\e[93m***** Install Jupyter Lab Extensions ****\e[38;5;241m" && \
pip install --quiet --upgrade \
$(cat /tmp/pip_jupyterlab_packages) && \
mamba install --quiet --yes \
nb_conda_kernels \
&& \
mamba install -c conda-forge \
jupyterlab-tour \
mamba_gator \
&& \
echo -e "\e[93m**** Installs Code Server Web ****\e[38;5;241m" && \
curl -fsSL https://code-server.dev/install.sh | sh -s -- --prefix=/opt --method=standalone && \
mkdir -p $CODESERVERDATA_DIR &&\
mkdir -p $CODESERVEREXT_DIR && \
PATH=/opt/bin:$PATH code-server \
--user-data-dir $CODESERVERDATA_DIR\
--extensions-dir $CODESERVEREXT_DIR \
$(cat /tmp/codeserver_extensions|sed 's/./--install-extension &/') && \
echo -e "\e[93m**** Install ZSH Kernel for Jupyter ****\e[38;5;241m" && \
python3 -m pip install zsh_jupyter_kernel && \
python3 -m zsh_jupyter_kernel.install --sys-prefix && \
echo -e "\e[93m**** Configure a nice zsh environment ****\e[38;5;241m" && \
git clone --recursive https://github.com/sorin-ionescu/prezto.git "$HOME/.zprezto" && \
zsh -c /tmp/initzsh.sh && \
sed -i -e "s/zstyle ':prezto:module:prompt' theme 'sorin'/zstyle ':prezto:module:prompt' theme 'powerlevel10k'/" $HOME/.zpreztorc && \
echo "[[ ! -f ~/.p10k.zsh ]] || source ~/.p10k.zsh" >> $HOME/.zshrc && \
echo "PATH=/opt/bin:$PATH" >> $HOME/.zshrc && \
echo -e "\e[93m**** Clean up ****\e[38;5;241m" && \
# npm cache clean --force && \
# mamba clean --all -f -y && \
# jupyter lab clean && \
rm -rf "/home/${NB_USER}/.cache/yarn" && \
fix-permissions "$CODESERVERDATA_DIR" && \
fix-permissions "$CODESERVEREXT_DIR" && \
fix-permissions "$CONDA_DIR" && \
fix-permissions /opt/codeserver/extensions && \
fix-permissions "/home/$NB_USER" && \
fix-permissions "/home/$NB_USER/.zprezto"
COPY code-server/jupyter_codeserver_config.py /tmp/
COPY code-server/icons $HOME/.jupyter/icons
RUN [[ ! -f /home/jovyan/.jupyter/jupyter_config.py ]] && touch /home/jovyan/.jupyter/jupyter_config.py ; \
cat /tmp/jupyter_codeserver_config.py >> /home/jovyan/.jupyter/jupyter_config.py
# Creates dirs and files in $HOME/work (persistent)
# adds links from $HOME (not persistent)
# usefull for config files like .gitconfig, .ssh, ...COPY create_work_subdirs.sh /usr/local/bin/before-notebook.d/create_work_subdirs.sh
ENV NEEDED_WORK_DIRS .ssh
ENV NEEDED_WORK_FILES .gitconfig
#Git client default initialisation
COPY gitinitconfig.sh /tmp/gitinitconfig.sh
COPY $PWD/initdockerclient.sh /usr/local/bin/before-notebook.d/initdockerclient.sh
RUN echo -e "\e[93m**** Update Jupyter config ****\e[38;5;241m" && \
mkdir -p $HOME/jupyter_data && \
jupyter lab --generate-config && \
sed -i -e '/c.ServerApp.root_dir =/ s/= .*/= "\/home\/jovyan\/work"/' \
-e "s/# \(c.ServerApp.root_dir\)/\1/" \
-e '/c.ServerApp.disable_check_xsrf =/ s/= .*/= True/' \
-e 's/# \(c.ServerApp.disable_check_xsrf\)/\1/' \
-e '/c.ServerApp.data_dir =/ s/= .*/= "\/home\/jovyan\/jupyter_data"/' \
-e "/c.ServerApp.terminado_settings =/ s/= .*/= { 'shell_command': ['\/bin\/zsh'] }/" \
-e 's/# \(c.ServerApp.terminado_settings\)/\1/' \
$HOME/.jupyter/jupyter_lab_config.py
RUN ln -s /usr/share/plantuml/plantuml.jar /usr/local/bin/
USER $NB_USER
# preinstall gitstatusd
RUN if [ "$TARGETPLATFORM" = "linux/amd64" ]; then \
ARCH_LEG=x86_64; \
ARCH=amd64; \
elif [ "$TARGETPLATFORM" = "linux/arm64/v8" ] || [ "$TARGETPLATFORM" = "linux/arm64" ]; then \
ARCH_LEG=aarch64; \
ARCH=arm64; \
else \
ARCH_LEG=amd64; \
ARCH=amd64; \
fi && \
mkdir -p /home/jovyan/.cache/gitstatus && \
curl -sL "https://github.com/romkatv/gitstatus/releases/download/v1.5.4/gitstatusd-linux-${ARCH_LEG}.tar.gz" | \
tar --directory="/home/jovyan/.cache/gitstatus" -zx
WORKDIR "${HOME}/work"