SIGWI
Identification of Signature whistles in the DOLPHINFREE dataset.
Using an original mehtod (DTW + HDBSCAN + manual verification), this repo analyses the whistle contour types (WCTs) and Signature Whistle Types (SWTs) of short-beaked common dolphins during the DOLPHINFREE experiments.
Description
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├── README.md
├── WCT_analysis_utils.py # Functions/classes for analyses
├── dtw_hdbscan_categorisation.py # Categorisation of contours into WCTs
├── WCT_analysis.ipynb # Overview and statistics on WCTs and SWTs
├── artwarp-comparison # Categorisation of contours with ARTwarp
│ ├── artwarp-custom # ARTwarp modified for octave
│ ├── ARTwarp_automation.py # Python script to run ARTwarp on all contours
│ ├── WCT_verification.py # Python script for manual verification
│ └── artwarp_hdbscan_comparison # Overview and comparison of WCTs obtained from 2 methods
├── resources # Inputs and outputs of python scripts
│ ├── ARTwarp_outputs # octave and json files
│ ├── DF-whistles # whistle features and json files
│ └── dtw_resources # hdbscan categorisation results
└── drafts # Folder containing unused scriptsWhat to use
Main results : see WCT_analysis.ipynb.
Comparison with ARTwarp: see artwarp-comparison/artwarp_hdbscan_comparison.ipynb.
Contact
For any additional requests, please contact me at loic.lehnhoff@gmail.com