Commit 24e351cb authored by Baptiste Bauvin's avatar Baptiste Bauvin
Browse files

Added all the files

parent 4e7e6c41
__pycache__
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__pycache__
demo/*.hdf5
demo/*.html
multiview_generator.egg-info
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include *.txt
include *.rst
include doc/*.rst doc/*.py
include multimodal/tests/*.py
include examples/*.py examples/*.txt
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This diff is collapsed.
Result analysis module
======================
.. automodule:: multiview_platform.mono_multi_view_classifiers.result_analysis
:members:
Multiview Platform
==================
.. toctree::
:maxdepth: 3
:caption: Contents:
execution
monomultidoc
analyzeresult
# -*- coding: utf-8 -*-
# import os, sys
#
# MultiviewPlatform documentation build configuration file, created by
# sphinx-quickstart on Mon Jan 29 17:13:09 2018.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import sys
sys.path.insert(0, os.path.abspath('.'))
sys.path.insert(0, os.path.abspath('../../multiview_generator'))
sys.path.insert(0, os.path.abspath('../..'))
file_loc = os.path.split(__file__)[0]
sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(file_loc), '.')))
# import multiview_platform
# -- General configuration ------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'
add_module_names = False
# sys.path.append(os.path.abspath('sphinxext'))
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = ['sphinx.ext.autodoc',
'sphinx.ext.extlinks',
# 'sphinx.ext.doctest',
# 'sphinx.ext.intersphinx',
# 'sphinx.ext.todo',
# 'nbsphinx',
'sphinx.ext.coverage',
'sphinx.ext.imgmath',
# 'sphinx.ext.mathjax',
# 'sphinx.ext.ifconfig',
# 'sphinx.ext.viewcode',
# 'sphinx.ext.githubpages',
'sphinx.ext.napoleon',
'm2r',]
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = {'.rst': 'restructuredtext', '.md': 'markdown'}
# source_suffix = '.rst'
source_suffix = ['.rst', '.md']
# source_parsers = {
# '.md': CommonMarkParser,
# }
# The master toctree document.
master_doc = 'index'
# General information about the project.
project = u'SMuDGE'
copyright = u'2019, Baptiste BAUVIN'
author = u'Baptiste BAUVIN and Dominique BENIELLI and Sokol KOCO and Cécile CAPPONI'
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = u'0.0.0'
# The full version, including alpha/beta/rc tags.
release = u'0'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = []
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True
# -- Options for HTML output ----------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
# html_theme = 'sphinx_rtd_theme'
html_theme = 'nature'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static/"]
# -- Options for HTMLHelp output ------------------------------------------
# Output file base name for HTML help builder.
htmlhelp_basename = 'SMuDGEdoc'
# -- Options for LaTeX output ---------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#
# 'preamble': '',
# Latex figure (float) alignment
#
# 'figure_align': 'htbp',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
(master_doc, 'SMuDGE.tex', u'SMuDGE Documentation',
u'Baptiste BAUVIN', 'manual'),
]
# -- Options for manual page output ---------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
(master_doc, 'smudge', u'SMuDGE Documentation',
[author], 1)
]
# -- Options for Texinfo output -------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(master_doc, 'SMuDGE', u'SMuDGE Documentation',
author, 'SMuDGE', 'One line description of project.',
'Miscellaneous'),
]
# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'https://docs.python.org/': None}
# def setup(app):
# app.add_config_value('recommonmark_config', {
# 'auto_toc_tree_section': 'Contents',
# }, True)
# app.add_transform(AutoStructify)
rst_prolog = """
.. role:: python(code)
:language: python
.. role :: yaml(code)
:language: yaml
.. |gene| replace:: SMuDGE
.. |gene_f| replace:: Supervised MUltimodal Dataset Generation Engine
.. |HPO| replace:: hyper-parameters optimization
"""
extlinks = {'base_source': ('https://gitlab.lis-lab.fr/baptiste.bauvin/smudge/-/tree/master/', "base_source"),
'base_doc': ('http://baptiste.bauvin.pages.lis-lab.fr/smudge/', 'base_doc')}
html_js_files = [
'plotly_js.js',
]
\ No newline at end of file
Welcome to the exection documentation
=====================================
.. automodule:: multiview_platform.execute
:members:
Welcome to Supervised MultiModal Integration Tool's documentation
=================================================================
This package has been designed as an easy-to-use platform to estimate different mono- and multi-view classifiers' performances on a multiview dataset.
The main advantage of the platform is that it allows to add and remove a classifier without modifying its core code (the procedure is described thoroughly in this documentation).
This documentation consists in a short read me, with instructions to install and get started with SuMMIT, then several use cases to discover the features, and all the documented sources.
.. note::
The documentation, the platform and the tests are constantly being updated.
All the content labelled WIP is Work In Progress
.. toctree::
:maxdepth: 1
readme_link
tutorials/index
references/multiview_platform
.. examples
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
multiview_platform
==================
.. toctree::
:maxdepth: 4
multiview_platform
.. mdinclude:: ../../README.md
API Documentation
=================
datasets
--------
.. automodule:: multimodal.datasets.data_sample
:members:
:inherited-members:
Boosting
--------
multimodal.boosting.mumbo
+++++++++++++++++++++++++
.. automodule:: multimodal.boosting.mumbo
:members:
:inherited-members:
multimodal.boosting.cumbo
+++++++++++++++++++++++++
.. automodule:: multimodal.boosting.cumbo
:members:
:inherited-members:
multimodal.boosting.boost
+++++++++++++++++++++++++
.. automodule:: multimodal.boosting.boost
:members:
:inherited-members:
Kernels
-------
multimodal.kernels.mvml
+++++++++++++++++++++++
.. automodule:: multimodal.kernels.mvml
:members:
:inherited-members:
multimodal.kernels.lpMKL
++++++++++++++++++++++++
.. automodule:: multimodal.kernels.lpMKL
:members:
:inherited-members:
multimodal.kernels.mkernel
++++++++++++++++++++++++++
.. automodule:: multimodal.kernels.mkernel
:members:
:inherited-members:
from recommonmark.transform import AutoStructify
def setup(app):
app.add_transform(AutoStructify)
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<head><meta charset="utf-8" /></head>
<body>
<div>
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