pytest

docs/source/conf.py

@@ -63,7 +63,7 @@ exclude_patterns = ['_build', '**.ipynb_checkpoints']
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = 'groundwork'
+html_theme = 'nature'
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,

multiview_generator/multiple_sub_problems.py

@@ -2,15 +2,16 @@ import os
 
 import h5py
 import numpy as np
+import yaml
 from sklearn.datasets import make_classification, make_gaussian_quantiles
 from tabulate import tabulate
 import pandas as pd
 import inspect
 from datetime import datetime
 
-from multiview_generator.utils import format_array, get_config_from_file, \
+from .utils import format_array, get_config_from_file, \
     init_random_state, init_error_matrix, init_list
-from multiview_generator.base_strs import *
+from .base_strs import *
 
 
 class MultiViewSubProblemsGenerator:
@@ -217,13 +218,12 @@ class MultiViewSubProblemsGenerator:
 
     def gen_view_report(self, view_index):
         view_string = "\n\n### View "+str(view_index+1)
-        view_string+="\n\nThis view is generated with {}, with the following configuration : \n```yaml\n".format(self._get_generator(view_index))
-        import yaml
+        view_string+="\n\nThis view is generated with {}, with the following configuration : \n```yaml\n".format(self._get_generator_report(view_index))
         view_string += yaml.dump(self.sub_problem_configurations[view_index], line_break="\n",default_flow_style=False)
         view_string+="```"
         return view_string
 
-    def _get_generator(self, view_index, doc_type=".md"):
+    def _get_generator_report(self, view_index, doc_type=".md"):
         if self.sub_problem_types[view_index] in ["make_classification", "base"]:
             return "[`make_classification`](https://scikit-learn.org/stable/modules/generated/sklearn.datasets.make_classification.html)"
         elif self.sub_problem_types[view_index]in ["gaussian", "make_gaussian_quantiles"]:

multiview_generator/tests/test_multiple_sub_problems.py

 import unittest
 import numpy as np
 
-from ..multiple_sub_problems import MultiViewSubProblemsGenerator
+from multiview_generator.multiple_sub_problems import MultiViewSubProblemsGenerator
 
 
-class Test_MultiVieSubProblemsGenerator():
+class Test_MultiViewSubProblemsGenerator(unittest.TestCase):
 
-    def __init__(self):
-        self.conf = np.array([
-            np.array([0.0, 0.1, 0.1, 0.9]),
-            np.array([0.0, 0.2, 0.1, 0.0]),
-            np.array([0.0, 0.3, 0.1, 0.0]),
-            np.array([0.0, 0.4, 0.2, 0.0]),
-            np.array([0.0, 0.5, 0.2, 0.0]),
-            np.array([0.0, 0.6, 0.2, 0.0]),
-            np.array([0.0, 0.7, 0.2, 0.0]),
-            np.array([0.0, 0.8, 0.1, 0.]),
-        ])
-        self.n_views = 4
-        self.n_folds = 10
-        self.n_classes = 8
-        self.n_samples = 2000
-        self.class_sep = 1.5
-        self.class_weights = [0.125, 0.1, 0.15, 0.125, 0.01, 0.2, 0.125, 0.125, ]
+    @classmethod
+    def setUpClass(cls):
+        pass
+
+    @classmethod
+    def tearDownClass(cls):
+        pass
+
+    def test_simple(self):
+        gene = MultiViewSubProblemsGenerator()
 

setup.py

@@ -16,7 +16,7 @@ def setup_package():
     here = os.path.abspath(os.path.dirname(__file__))
     with open(os.path.join(here, 'README.md'), encoding='utf-8') as readme:
         long_description = readme.read()
-    group = 'baptiste.bauvin'
+    group = 'dev'
     url = 'https://gitlab.lis-lab.fr/{}/{}'.format(group, name)
     project_urls = {
         'Documentation': 'http://{}.pages.lis-lab.fr/{}'.format(group, name),