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Commit 9ad02f66 authored by bbauvin's avatar bbauvin
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Added kmulitomic

parent bd5ba6d4
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...@@ -19,8 +19,14 @@ __status__ = "Prototype" # Production, Development, P ...@@ -19,8 +19,14 @@ __status__ = "Prototype" # Production, Development, P
def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs):
max_attrtibutes = kwargs['0'] max_attrtibutes = kwargs['0']
try:
p = kwargs['1'] p = kwargs['1']
except:
p=1.0
try:
model_type = kwargs['2'] model_type = kwargs['2']
except:
model_type="conjunction"
try: try:
attributeClassification = kwargs["attributeClassification"] attributeClassification = kwargs["attributeClassification"]
binaryAttributes = kwargs["binaryAttributes"] binaryAttributes = kwargs["binaryAttributes"]
......
...@@ -648,9 +648,9 @@ def getKMultiOmicDBcsv(features, path, name, NB_CLASS, LABELS_NAMES): ...@@ -648,9 +648,9 @@ def getKMultiOmicDBcsv(features, path, name, NB_CLASS, LABELS_NAMES):
logging.debug("Done:\t Getting Binarized MiRNA Data") logging.debug("Done:\t Getting Binarized MiRNA Data")
logging.debug("Start:\t Getting Binned MiRNA Data") logging.debug("Start:\t Getting Binned MiRNA Data")
lenBins = 16 lenBins = 21
nbBins = 1026 nbBins = 1026
overlapping = 14 overlapping = 20
try: try:
sortedBinsMatrix = np.genfromtxt(path+"sortedBinsMatrix--t-"+str(lenBins)+"--n-"+str(nbBins)+"--c-"+str(overlapping)+".csv", delimiter=",") sortedBinsMatrix = np.genfromtxt(path+"sortedBinsMatrix--t-"+str(lenBins)+"--n-"+str(nbBins)+"--c-"+str(overlapping)+".csv", delimiter=",")
except: except:
......
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