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Commit 59e9af6c authored by bbauvin's avatar bbauvin
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Trying to fix segmentation fault

parent 43fa9dfd
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...@@ -14,10 +14,7 @@ def getV(DATASET, viewIndex, usedIndices=None): ...@@ -14,10 +14,7 @@ def getV(DATASET, viewIndex, usedIndices=None):
shape=DATASET.get("View"+str(viewIndex)).attrs["shape"])[usedIndices,:] shape=DATASET.get("View"+str(viewIndex)).attrs["shape"])[usedIndices,:]
print sparse_mat.shape print sparse_mat.shape
print sparse_mat.indptr print sparse_mat.indptr
return sparse.csr_matrix((DATASET.get("View"+str(viewIndex)).get("data").value, return sparse_mat
DATASET.get("View"+str(viewIndex)).get("indices").value,
DATASET.get("View"+str(viewIndex)).get("indptr").value),
shape=DATASET.get("View"+str(viewIndex)).attrs["shape"])[usedIndices,:]
def getShape(DATASET, viewIndex): def getShape(DATASET, viewIndex):
...@@ -31,10 +28,13 @@ def getValue(DATASET): ...@@ -31,10 +28,13 @@ def getValue(DATASET):
if not DATASET.attrs["sparse"]: if not DATASET.attrs["sparse"]:
return DATASET.value return DATASET.value
else: else:
return sparse.csr_matrix((DATASET.get("data").value, sparse_mat = sparse.csr_matrix((DATASET.get("data").value,
DATASET.get("indices").value, DATASET.get("indices").value,
DATASET.get("indptr").value), DATASET.get("indptr").value),
shape=DATASET.attrs["shape"]) shape=DATASET.attrs["shape"])
print sparse_mat.shape
print sparse_mat.indptr
return sparse_mat
def extractSubset(matrix, usedIndices): def extractSubset(matrix, usedIndices):
if sparse.issparse(matrix): if sparse.issparse(matrix):
......
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