diff --git a/README.md b/README.md index 6c3f2f648d76d10c20fa8866c1ded97c0e722e23..e75a1698858dd4d847b30c450d4e7cca1dd6f2a5 100644 --- a/README.md +++ b/README.md @@ -12,17 +12,22 @@ Preprint BioRXiv [ | [download](https://sync.lis-lab.fr/index.php/s/degZsCxN7ZXxeB6/download) | -#### ```Demo Notebooks on Google Colab``` -* **Use Case n°1:** Use a pre-trained µPIX model to denoise an image dataset (```metrology``` dataset) [](https://colab.research.google.com/drive/1EbV04iv141q7ebVUOErJupYboaCV40OD?usp=drive_link) -* **Use Case n°2:** Train a µPIX model from scratch using a custom dataset (```metrology``` dataset) [](https://colab.research.google.com/drive/1GaD6rjWGJsBr2dFy-WPLC3YjCZO4LJGl?usp=drive_link) +|```Demo Notebooks on Google Colab``` | | | +|---|---|---| +| **Use case #1** | Use a pre-trained µPIX model to denoise an image dataset (```metrology``` dataset) | [](https://colab.research.google.com/drive/1EbV04iv141q7ebVUOErJupYboaCV40OD?usp=drive_link) +| **Use case #2** | Train a µPIX model from scratch using a custom dataset (```metrology``` dataset) | [](https://colab.research.google.com/drive/1GaD6rjWGJsBr2dFy-WPLC3YjCZO4LJGl?usp=drive_link) -#### ```Reproductibility ``` -* **Code supporting Tables and Figures:** [](https://colab.research.google.com/drive/1x1NtdC0b-vgsjWv0oUbeRzDLmDwv6NiV?usp=drive_link) -## Install µPIX Environment and Sources ([Tutorial VIDEO](https://sync.lis-lab.fr/index.php/s/GeNyYdLHMCRTfS9)) +|```Reproductibility ``` | | +|---|---| +|**Ready-to-use Notebook supporting Tables and Figures presented in the paper** |[](https://colab.research.google.com/drive/1x1NtdC0b-vgsjWv0oUbeRzDLmDwv6NiV?usp=drive_link)| + + + +## Install µPIX Environment and Sources ([Tutorial 🎬](https://sync.lis-lab.fr/index.php/s/GeNyYdLHMCRTfS9)) <details> <summary>Click to expand</summary> @@ -35,8 +40,6 @@ Preprint BioRXiv [. Then : 1- Create a miniconda environment and source it: @@ -68,7 +71,7 @@ pip install -r mupix/requirements.txt -## Use Case #1 - Use a pre-trained µPIX model to denoise an image dataset ([Tutorial VIDEO](https://sync.lis-lab.fr/index.php/s/ftw9fdGacJyyfBq)) +## Use Case #1 - Use a pre-trained µPIX model to denoise an image dataset ([Tutorial 🎬](https://sync.lis-lab.fr/index.php/s/ftw9fdGacJyyfBq)) <details> <summary>Click to expand</summary> @@ -181,7 +184,8 @@ Once completed, the denoised images are stored in the ```./experiments/metrology </details> -## Use Case #2 - Train a µPIX model from scratch using a custom dataset +## Use Case #2 - Train a µPIX model from scratch using a custom dataset ([Tutorial 🎬](https://sync.lis-lab.fr/index.php/s/pb5jPqNtTgwFSjB)) + <details> <summary>Click to expand</summary>