From 2a608ee7428287842f97a55dafde576d6b6a4573 Mon Sep 17 00:00:00 2001
From: raul-silva <40128918+raul-silva@users.noreply.github.com>
Date: Tue, 15 Apr 2025 11:30:11 +0200
Subject: [PATCH] v20250415-2: Changing main directory
Simply removing a level of directory.
---
lmt-analysis/.gitlab-ci.yml => .gitlab-ci.yml | 0
.../EMT_notebooks/Add_markers.ipynb | 0
.../Add_markers_social_range.ipynb | 0
.../EMT_notebooks/Add_markers_speed.ipynb | 0
.../EMT_notebooks/Compare_merge_methods.ipynb | 0
.../EMT_notebooks/Convert_frame_time.ipynb | 0
.../Correct_Identity_Swaps.ipynb | 0
.../Correct_Identity_Swaps_v2.ipynb | 0
.../Extract_distance_traveled.ipynb | 0
.../EMT_notebooks/Plot_Cage_Conditions.ipynb | 0
.../EMT_notebooks/Post-process_events.ipynb | 0
.../Rebuild_All_Events_LMT.ipynb | 0
...ld_Contacts_Biberon_Mangeoire_Objets.ipynb | 0
.../Rebuild_Huddling_events.ipynb | 0
.../Rebuild_InterestZone_events.ipynb | 0
.../Rebuild_WaterZone_events.ipynb | 0
.../EMT_notebooks/Split_database_v1.ipynb | 0
.../EMT_notebooks/Split_database_v2.ipynb | 0
.../LMT => EMT}/EMT_notebooks/make_gif.ipynb | 0
.../EMT_scripts/Add_markers_script.py | 0
.../Extract_distance_traveled_script.py | 0
.../Plot_Cage_Conditions_script.py | 0
.../EMT_scripts/Post_process_events_script.py | 0
.../Rebuild_All_Events_LMT_script.py | 0
...ontacts_Biberon_Mangeoire_Objets_script.py | 0
.../Rebuild_Huddling_events_script.py | 0
.../EMT_scripts/Rebuild_SAP_events_script.py | 0
.../Rebuild_WallJump_events_script.py | 0
.../Stop_events_analysis_script.py | 0
.../EMT_scripts/actions_pproc_params.yaml | 0
.../EMT_scripts/extract_actions.py | 0
.../EMT_scripts/processing_events.py | 0
.../EMT_scripts/run_EMT_pipeline.py | 0
.../LMT => EMT}/EMT_scripts/video_2_seq.py | 0
.../Live Mouse Tracker Analysis.ipynb | 0
{lmt-analysis/LMT => EMT}/__init__.py | 0
.../examples/001_draw_anonymous_detection.py | 0
.../examples/001_draw_trajectory.py | 0
.../002_draw_trajectory_filter_speed_1.py | 0
.../003_draw_trajectory_filter_speed_2.py | 0
.../004_draw_trajectory_filter_area.py | 0
.../examples/005_time_spent_in_area.py | 0
.../examples/006_plot_3D_trajectory.py | 0
.../examples/007_distance_traveled.py | 0
.../008_load_and_show_event_time_line.py | 0
...9_load_and_show_event_time_line_with_id.py | 0
..._load_and_show_event_time_line_with_id2.py | 0
.../examples/011_number_and_duration_event.py | 0
.../LMT => EMT}/examples/012_ShowMask.py | 0
...les with Jupyter - Interactive query.ipynb | 0
.../examples/Examples with Jupyter.ipynb | 0
.../LMT => EMT}/examples/__init__.py | 0
.../Compute Successive Water Stop.ipynb | 0
.../ComputeSuccessiveWaterStops.py | 0
.../experimental/Cumulated waterpoint.ipynb | 0
{lmt-analysis/LMT => EMT}/images/feeders.txt | 0
.../LMT => EMT}/images/view_coherence.gif | Bin
.../LMT => EMT}/lmtanalysis/Animal.py | 0
.../LMT => EMT}/lmtanalysis/AnimalType.py | 0
.../lmtanalysis/BehaviouralSequencesUtil.py | 0
.../lmtanalysis/BuildDataBaseIndex.py | 0
.../lmtanalysis/BuildEventApproachContact.py | 0
.../lmtanalysis/BuildEventApproachRear.py | 0
.../BuildEventCenterPeripheryLocation.py | 0
.../lmtanalysis/BuildEventDetection.py | 0
...anOralOralSideSideNoseAnogenitalContact.py | 0
.../BuildEventExclusiveMoveStopIsolated.py | 0
.../BuildEventExclusiveUndetected.py | 0
.../lmtanalysis/BuildEventFloorSniffing.py | 0
.../lmtanalysis/BuildEventFollowZone.py | 0
.../lmtanalysis/BuildEventGetAway.py | 0
.../lmtanalysis/BuildEventGroup2.py | 0
.../lmtanalysis/BuildEventGroup3.py | 0
.../lmtanalysis/BuildEventGroup3MakeBreak.py | 0
.../lmtanalysis/BuildEventGroup4.py | 0
.../lmtanalysis/BuildEventGroup4MakeBreak.py | 0
.../lmtanalysis/BuildEventHuddling.py | 0
.../BuildEventInterestZoneLocation.py | 0
.../LMT => EMT}/lmtanalysis/BuildEventMove.py | 0
.../lmtanalysis/BuildEventNest3.py | 0
.../lmtanalysis/BuildEventNest4.py | 0
.../lmtanalysis/BuildEventNight.py | 0
.../BuildEventObjectSniffingNor.py | 0
...tObjectSniffingNorAcquisitionWithConfig.py | 0
...ildEventObjectSniffingNorTestWithConfig.py | 0
.../lmtanalysis/BuildEventOnHouse.py | 0
.../BuildEventOralGenitalContact.py | 0
.../lmtanalysis/BuildEventOralOralContact.py | 0
.../lmtanalysis/BuildEventOralSideSequence.py | 0
.../lmtanalysis/BuildEventOtherContact.py | 0
.../BuildEventPassiveAnogenitalSniff.py | 0
.../lmtanalysis/BuildEventRear5.py | 0
.../BuildEventRearCenterPeriphery.py | 0
.../LMT => EMT}/lmtanalysis/BuildEventSAP.py | 0
.../lmtanalysis/BuildEventSAP_oldv.py | 0
.../lmtanalysis/BuildEventSideBySide.py | 0
.../BuildEventSideBySideOpposite.py | 0
.../lmtanalysis/BuildEventSideWalk.py | 0
.../lmtanalysis/BuildEventSocialApproach.py | 0
.../lmtanalysis/BuildEventSocialEscape.py | 0
.../LMT => EMT}/lmtanalysis/BuildEventStop.py | 0
.../lmtanalysis/BuildEventTrain2.py | 0
.../lmtanalysis/BuildEventTrain3.py | 0
.../lmtanalysis/BuildEventTrain4.py | 0
.../lmtanalysis/BuildEventWallJump.py | 0
.../lmtanalysis/BuildEventWallJump_oldv.py | 0
.../lmtanalysis/BuildEventWaterPoint.py | 0
.../lmtanalysis/CheckWrongAnimal.py | 0
.../LMT => EMT}/lmtanalysis/Chronometer.py | 0
.../lmtanalysis/CorrectDetectionIntegrity.py | 0
.../LMT => EMT}/lmtanalysis/Detection.py | 0
.../LMT => EMT}/lmtanalysis/Event.py | 0
.../lmtanalysis/EventTimeLineCache.py | 0
.../LMT => EMT}/lmtanalysis/FileUtil.py | 0
{lmt-analysis/LMT => EMT}/lmtanalysis/Mask.py | 0
.../LMT => EMT}/lmtanalysis/Measure.py | 0
.../LMT => EMT}/lmtanalysis/MeasureOld.py | 0
.../LMT => EMT}/lmtanalysis/Parameters.py | 0
.../lmtanalysis/ParametersMouse.py | 0
.../LMT => EMT}/lmtanalysis/ParametersRat.py | 0
.../LMT => EMT}/lmtanalysis/Point.py | 0
.../LMT => EMT}/lmtanalysis/Rectangle.py | 0
.../LMT => EMT}/lmtanalysis/Settings.py | 0
.../LMT => EMT}/lmtanalysis/TaskLogger.py | 0
{lmt-analysis/LMT => EMT}/lmtanalysis/Util.py | 0
.../LMT => EMT}/lmtanalysis/__init__.py | 0
.../LMT => EMT}/lmtanalysis/split_database.py | 0
.../LMT => EMT}/scripts/AddFileInfo.py | 0
.../LMT => EMT}/scripts/AlterColBase.py | 0
.../LMT => EMT}/scripts/AutoNightInput.ipynb | 0
.../.idea/BehaviouralSequences.iml | 0
.../inspectionProfiles/profiles_settings.xml | 0
.../BehaviouralSequences/.idea/modules.xml | 0
.../BehaviouralSequences/.idea/workspace.xml | 0
.../CheckEventsForSequences.py | 0
.../CompareProfileInitialExclusiveEvents.py | 0
.../ComputeTransitionsBetweenEvents.py | 0
.../BehaviouralSequences/ExclusivePattern.py | 0
.../ExtractEventTableFromDatabase.py | 0
.../scripts/BehaviouralSequences/__init__.py | 0
.../scripts/BehaviouralSequences/mygraph.html | 0
.../LMT => EMT}/scripts/BuildDataBaseIndex.py | 0
.../scripts/Check_Experiment_Reliability.py | 0
.../scripts/ComputeMeanSpeedPerEvent.py | 0
...eMeasuresIdentityProfileOneMouseAuto.ipynb | 0
...easuresIdentityProfileOneMouseAutomatic.py | 0
...tyProfileOneMouseAutomaticPerIndividual.py | 0
.../Compute_Contact_Out_Of_Nest_Zone.py | 0
.../Compute_Distance_Lg_Term_Timebin.py | 0
.../Compute_Event_Duration_Distribution.py | 0
...ute_Individual_Profiles_Mixed_Genotypes.py | 0
.../scripts/Compute_Link_Make_Break_Group3.py | 0
.../scripts/Compute_Link_Make_Break_Group4.py | 0
.../scripts/Compute_Make_Break_Group3.py | 0
.../scripts/Compute_Make_Break_Group4.py | 0
.../scripts/Compute_Manual_Validation.py | 0
.../Compute_Measures_Identity_Profile.py | 0
...ompute_Measures_Identity_Profile_Dyadic.py | 0
...ures_Identity_Profile_Mixed_Geno_Groups.py | 0
...pute_Measures_Identity_Profile_OneMouse.py | 0
..._Identity_Profile_OneMouse_During_Night.py | 0
...Compute_Measures_Identity_Profile_Pairs.py | 0
...es_Identity_Profile_Single_Object_Explo.py | 0
...res_Identity_Profile_Social_Recognition.py | 0
.../scripts/Compute_OnHouseStats.py | 0
.../scripts/Compute_OnHouseTimelines.py | 0
.../scripts/Compute_Proportions_Group3.py | 0
.../ExportAnimalListFromJsonResultFile.py | 0
.../scripts/ExportResultsDyadicToCSV.py | 0
.../scripts/ExportResultsOpenField.py | 0
.../LMT => EMT}/scripts/ExportResultsToCSV.py | 0
.../Inter animal interaction matrix.py | 0
.../scripts/ManualNightInput.ipynb | 0
.../LMT => EMT}/scripts/ManualNightInput.py | 0
.../ComputeActivityHabituationNorOpenfield.py | 0
.../ComputeActivityHabituationNorTest.py | 0
...omputeActivityHabituationNorTestRedCage.py | 0
.../ComputeNORAnalysis.py | 0
.../ComputeNORAnalysisGenotypeComparison.py | 0
.../ComputeNORAnalysisObjectComparisons.py | 0
.../ComputeObjectRecognition.py | 0
.../ComputeObjectRecognitionNorRedCage.py | 0
.../ConfigurationNOR.py | 0
.../checkObjectPreference.py | 0
.../computeManualScoringNOR.py | 0
.../LMT => EMT}/scripts/Plot Heat Map.ipynb | 0
.../scripts/PlotFigurePairsBothSexes.py | 0
.../scripts/PlotFigureProfilesAuto.py | 0
.../LMT => EMT}/scripts/PlotSensorData.py | 0
.../scripts/PlotTimeLineActivity.py | 0
.../PlotTimeLineActivityAutomatic.ipynb | 0
.../scripts/PlotTimeLineActivityAutomatic.py | 0
.../PlotTimeLineCumulativeWaterPoint.py | 0
.../Plot_Activity_Interlab_Study_First_4h.py | 0
...tivity_NOR_habituation_group_monitoring.py | 0
.../Plot_Trajectory_Single_Object_Explo.py | 0
.../scripts/Rebuild all events.ipynb | 0
.../LMT => EMT}/scripts/Rebuild_All_Events.py | 0
.../Rebuild_All_Exclusive_Contact_Events.py | 0
.../scripts/Rebuild_All_Profile_Relative.py | 0
.../scripts/Rebuild_All_Profile_deprecated.py | 0
.../LMT => EMT}/scripts/Rebuild_info_mice.py | 0
.../scripts/SemiAutomaticNightInput.py | 0
.../LMT => EMT}/scripts/SetGenotype.ipynb | 0
.../scripts/Show Sensor Data.ipynb | 0
{lmt-analysis/LMT => EMT}/scripts/ShowLog.py | 0
{lmt-analysis/LMT => EMT}/scripts/__init__.py | 0
.../LMT => EMT}/scripts/checkMove.py | 0
.../LMT => EMT}/scripts/checkTimeLine.py | 0
{lmt-analysis/LMT => EMT}/scripts/fix_RFID.py | 0
.../scripts/nightInputFromSensor.py | 0
.../LMT => EMT}/scripts/sensor/__init__.py | 0
.../scripts/sensor/plotSensorData.py | 0
.../LMT => EMT}/scripts/tools/RecoverFrame.py | 0
.../LMT => EMT}/scripts/tools/__init__.py | 0
{lmt-analysis/LMT => EMT}/setup.py | 0
lmt-analysis/LICENSE => LICENSE | 0
lmt-analysis/README.md => README.md | 0
lmt-analysis/.idea/.gitignore | 3 ---
lmt-analysis/.idea/codestream.xml | 6 ------
lmt-analysis/.idea/lmt-analysis.iml | 18 ------------------
lmt-analysis/.idea/misc.xml | 4 ----
lmt-analysis/.idea/modules.xml | 8 --------
lmt-analysis/.idea/vcs.xml | 6 ------
lmt-analysis/.project | 18 ------------------
lmt-analysis/.pydevproject | 12 ------------
.../org.eclipse.core.resources.prefs | 5 -----
.../inspectionProfiles/profiles_settings.xml | 6 ------
228 files changed, 86 deletions(-)
rename lmt-analysis/.gitlab-ci.yml => .gitlab-ci.yml (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Add_markers.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Add_markers_social_range.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Add_markers_speed.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Compare_merge_methods.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Convert_frame_time.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Correct_Identity_Swaps.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Correct_Identity_Swaps_v2.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Extract_distance_traveled.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Plot_Cage_Conditions.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Post-process_events.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Rebuild_All_Events_LMT.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Rebuild_Contacts_Biberon_Mangeoire_Objets.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Rebuild_Huddling_events.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Rebuild_InterestZone_events.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Rebuild_WaterZone_events.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Split_database_v1.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/Split_database_v2.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_notebooks/make_gif.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Add_markers_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Extract_distance_traveled_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Plot_Cage_Conditions_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Post_process_events_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Rebuild_All_Events_LMT_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Rebuild_Contacts_Biberon_Mangeoire_Objets_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Rebuild_Huddling_events_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Rebuild_SAP_events_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Rebuild_WallJump_events_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/Stop_events_analysis_script.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/actions_pproc_params.yaml (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/extract_actions.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/processing_events.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/run_EMT_pipeline.py (100%)
rename {lmt-analysis/LMT => EMT}/EMT_scripts/video_2_seq.py (100%)
rename {lmt-analysis/LMT => EMT}/Live Mouse Tracker Analysis.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/__init__.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/001_draw_anonymous_detection.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/001_draw_trajectory.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/002_draw_trajectory_filter_speed_1.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/003_draw_trajectory_filter_speed_2.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/004_draw_trajectory_filter_area.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/005_time_spent_in_area.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/006_plot_3D_trajectory.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/007_distance_traveled.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/008_load_and_show_event_time_line.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/009_load_and_show_event_time_line_with_id.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/010_load_and_show_event_time_line_with_id2.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/011_number_and_duration_event.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/012_ShowMask.py (100%)
rename {lmt-analysis/LMT => EMT}/examples/Examples with Jupyter - Interactive query.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/examples/Examples with Jupyter.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/examples/__init__.py (100%)
rename {lmt-analysis/LMT => EMT}/experimental/Compute Successive Water Stop.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/experimental/ComputeSuccessiveWaterStops.py (100%)
rename {lmt-analysis/LMT => EMT}/experimental/Cumulated waterpoint.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/images/feeders.txt (100%)
rename {lmt-analysis/LMT => EMT}/images/view_coherence.gif (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Animal.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/AnimalType.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BehaviouralSequencesUtil.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildDataBaseIndex.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventApproachContact.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventApproachRear.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventCenterPeripheryLocation.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventDetection.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventExclusiveCleanOralOralSideSideNoseAnogenitalContact.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventExclusiveMoveStopIsolated.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventExclusiveUndetected.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventFloorSniffing.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventFollowZone.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventGetAway.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventGroup2.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventGroup3.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventGroup3MakeBreak.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventGroup4.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventGroup4MakeBreak.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventHuddling.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventInterestZoneLocation.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventMove.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventNest3.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventNest4.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventNight.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventObjectSniffingNor.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventObjectSniffingNorAcquisitionWithConfig.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventObjectSniffingNorTestWithConfig.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventOnHouse.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventOralGenitalContact.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventOralOralContact.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventOralSideSequence.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventOtherContact.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventPassiveAnogenitalSniff.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventRear5.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventRearCenterPeriphery.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSAP.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSAP_oldv.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSideBySide.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSideBySideOpposite.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSideWalk.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSocialApproach.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventSocialEscape.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventStop.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventTrain2.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventTrain3.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventTrain4.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventWallJump.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventWallJump_oldv.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/BuildEventWaterPoint.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/CheckWrongAnimal.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Chronometer.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/CorrectDetectionIntegrity.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Detection.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Event.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/EventTimeLineCache.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/FileUtil.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Mask.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Measure.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/MeasureOld.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Parameters.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/ParametersMouse.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/ParametersRat.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Point.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Rectangle.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Settings.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/TaskLogger.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/Util.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/__init__.py (100%)
rename {lmt-analysis/LMT => EMT}/lmtanalysis/split_database.py (100%)
rename {lmt-analysis/LMT => EMT}/scripts/AddFileInfo.py (100%)
rename {lmt-analysis/LMT => EMT}/scripts/AlterColBase.py (100%)
rename {lmt-analysis/LMT => EMT}/scripts/AutoNightInput.ipynb (100%)
rename {lmt-analysis/LMT => EMT}/scripts/BehaviouralSequences/.idea/BehaviouralSequences.iml (100%)
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diff --git a/lmt-analysis/LMT/examples/012_ShowMask.py b/EMT/examples/012_ShowMask.py
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rename from lmt-analysis/LMT/examples/012_ShowMask.py
rename to EMT/examples/012_ShowMask.py
diff --git a/lmt-analysis/LMT/examples/Examples with Jupyter - Interactive query.ipynb b/EMT/examples/Examples with Jupyter - Interactive query.ipynb
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rename from lmt-analysis/LMT/examples/Examples with Jupyter - Interactive query.ipynb
rename to EMT/examples/Examples with Jupyter - Interactive query.ipynb
diff --git a/lmt-analysis/LMT/examples/Examples with Jupyter.ipynb b/EMT/examples/Examples with Jupyter.ipynb
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rename from lmt-analysis/LMT/examples/Examples with Jupyter.ipynb
rename to EMT/examples/Examples with Jupyter.ipynb
diff --git a/lmt-analysis/LMT/examples/__init__.py b/EMT/examples/__init__.py
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rename from lmt-analysis/LMT/examples/__init__.py
rename to EMT/examples/__init__.py
diff --git a/lmt-analysis/LMT/experimental/Compute Successive Water Stop.ipynb b/EMT/experimental/Compute Successive Water Stop.ipynb
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rename from lmt-analysis/LMT/experimental/Compute Successive Water Stop.ipynb
rename to EMT/experimental/Compute Successive Water Stop.ipynb
diff --git a/lmt-analysis/LMT/experimental/ComputeSuccessiveWaterStops.py b/EMT/experimental/ComputeSuccessiveWaterStops.py
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rename from lmt-analysis/LMT/experimental/ComputeSuccessiveWaterStops.py
rename to EMT/experimental/ComputeSuccessiveWaterStops.py
diff --git a/lmt-analysis/LMT/experimental/Cumulated waterpoint.ipynb b/EMT/experimental/Cumulated waterpoint.ipynb
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rename from lmt-analysis/LMT/experimental/Cumulated waterpoint.ipynb
rename to EMT/experimental/Cumulated waterpoint.ipynb
diff --git a/lmt-analysis/LMT/images/feeders.txt b/EMT/images/feeders.txt
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rename from lmt-analysis/LMT/images/feeders.txt
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diff --git a/lmt-analysis/LMT/images/view_coherence.gif b/EMT/images/view_coherence.gif
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rename from lmt-analysis/LMT/images/view_coherence.gif
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diff --git a/lmt-analysis/LMT/lmtanalysis/Animal.py b/EMT/lmtanalysis/Animal.py
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rename from lmt-analysis/LMT/lmtanalysis/Animal.py
rename to EMT/lmtanalysis/Animal.py
diff --git a/lmt-analysis/LMT/lmtanalysis/AnimalType.py b/EMT/lmtanalysis/AnimalType.py
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rename from lmt-analysis/LMT/lmtanalysis/AnimalType.py
rename to EMT/lmtanalysis/AnimalType.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BehaviouralSequencesUtil.py b/EMT/lmtanalysis/BehaviouralSequencesUtil.py
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rename from lmt-analysis/LMT/lmtanalysis/BehaviouralSequencesUtil.py
rename to EMT/lmtanalysis/BehaviouralSequencesUtil.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildDataBaseIndex.py b/EMT/lmtanalysis/BuildDataBaseIndex.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildDataBaseIndex.py
rename to EMT/lmtanalysis/BuildDataBaseIndex.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventApproachContact.py b/EMT/lmtanalysis/BuildEventApproachContact.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventApproachContact.py
rename to EMT/lmtanalysis/BuildEventApproachContact.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventApproachRear.py b/EMT/lmtanalysis/BuildEventApproachRear.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventApproachRear.py
rename to EMT/lmtanalysis/BuildEventApproachRear.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventCenterPeripheryLocation.py b/EMT/lmtanalysis/BuildEventCenterPeripheryLocation.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventCenterPeripheryLocation.py
rename to EMT/lmtanalysis/BuildEventCenterPeripheryLocation.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventDetection.py b/EMT/lmtanalysis/BuildEventDetection.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventDetection.py
rename to EMT/lmtanalysis/BuildEventDetection.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventExclusiveCleanOralOralSideSideNoseAnogenitalContact.py b/EMT/lmtanalysis/BuildEventExclusiveCleanOralOralSideSideNoseAnogenitalContact.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventExclusiveCleanOralOralSideSideNoseAnogenitalContact.py
rename to EMT/lmtanalysis/BuildEventExclusiveCleanOralOralSideSideNoseAnogenitalContact.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventExclusiveMoveStopIsolated.py b/EMT/lmtanalysis/BuildEventExclusiveMoveStopIsolated.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventExclusiveMoveStopIsolated.py
rename to EMT/lmtanalysis/BuildEventExclusiveMoveStopIsolated.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventExclusiveUndetected.py b/EMT/lmtanalysis/BuildEventExclusiveUndetected.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventExclusiveUndetected.py
rename to EMT/lmtanalysis/BuildEventExclusiveUndetected.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventFloorSniffing.py b/EMT/lmtanalysis/BuildEventFloorSniffing.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventFloorSniffing.py
rename to EMT/lmtanalysis/BuildEventFloorSniffing.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventFollowZone.py b/EMT/lmtanalysis/BuildEventFollowZone.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventFollowZone.py
rename to EMT/lmtanalysis/BuildEventFollowZone.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventGetAway.py b/EMT/lmtanalysis/BuildEventGetAway.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventGetAway.py
rename to EMT/lmtanalysis/BuildEventGetAway.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventGroup2.py b/EMT/lmtanalysis/BuildEventGroup2.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventGroup2.py
rename to EMT/lmtanalysis/BuildEventGroup2.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventGroup3.py b/EMT/lmtanalysis/BuildEventGroup3.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventGroup3.py
rename to EMT/lmtanalysis/BuildEventGroup3.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventGroup3MakeBreak.py b/EMT/lmtanalysis/BuildEventGroup3MakeBreak.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventGroup3MakeBreak.py
rename to EMT/lmtanalysis/BuildEventGroup3MakeBreak.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventGroup4.py b/EMT/lmtanalysis/BuildEventGroup4.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventGroup4.py
rename to EMT/lmtanalysis/BuildEventGroup4.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventGroup4MakeBreak.py b/EMT/lmtanalysis/BuildEventGroup4MakeBreak.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventGroup4MakeBreak.py
rename to EMT/lmtanalysis/BuildEventGroup4MakeBreak.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventHuddling.py b/EMT/lmtanalysis/BuildEventHuddling.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventHuddling.py
rename to EMT/lmtanalysis/BuildEventHuddling.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventInterestZoneLocation.py b/EMT/lmtanalysis/BuildEventInterestZoneLocation.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventInterestZoneLocation.py
rename to EMT/lmtanalysis/BuildEventInterestZoneLocation.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventMove.py b/EMT/lmtanalysis/BuildEventMove.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventMove.py
rename to EMT/lmtanalysis/BuildEventMove.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventNest3.py b/EMT/lmtanalysis/BuildEventNest3.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventNest3.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventNest4.py b/EMT/lmtanalysis/BuildEventNest4.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventNest4.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventNight.py b/EMT/lmtanalysis/BuildEventNight.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventNight.py
rename to EMT/lmtanalysis/BuildEventNight.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventObjectSniffingNor.py b/EMT/lmtanalysis/BuildEventObjectSniffingNor.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventObjectSniffingNor.py
rename to EMT/lmtanalysis/BuildEventObjectSniffingNor.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventObjectSniffingNorAcquisitionWithConfig.py b/EMT/lmtanalysis/BuildEventObjectSniffingNorAcquisitionWithConfig.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventObjectSniffingNorAcquisitionWithConfig.py
rename to EMT/lmtanalysis/BuildEventObjectSniffingNorAcquisitionWithConfig.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventObjectSniffingNorTestWithConfig.py b/EMT/lmtanalysis/BuildEventObjectSniffingNorTestWithConfig.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventObjectSniffingNorTestWithConfig.py
rename to EMT/lmtanalysis/BuildEventObjectSniffingNorTestWithConfig.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventOnHouse.py b/EMT/lmtanalysis/BuildEventOnHouse.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventOnHouse.py
rename to EMT/lmtanalysis/BuildEventOnHouse.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventOralGenitalContact.py b/EMT/lmtanalysis/BuildEventOralGenitalContact.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventOralGenitalContact.py
rename to EMT/lmtanalysis/BuildEventOralGenitalContact.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventOralOralContact.py b/EMT/lmtanalysis/BuildEventOralOralContact.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventOralOralContact.py
rename to EMT/lmtanalysis/BuildEventOralOralContact.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventOralSideSequence.py b/EMT/lmtanalysis/BuildEventOralSideSequence.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventOralSideSequence.py
rename to EMT/lmtanalysis/BuildEventOralSideSequence.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventOtherContact.py b/EMT/lmtanalysis/BuildEventOtherContact.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventOtherContact.py
rename to EMT/lmtanalysis/BuildEventOtherContact.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventPassiveAnogenitalSniff.py b/EMT/lmtanalysis/BuildEventPassiveAnogenitalSniff.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventPassiveAnogenitalSniff.py
rename to EMT/lmtanalysis/BuildEventPassiveAnogenitalSniff.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventRear5.py b/EMT/lmtanalysis/BuildEventRear5.py
similarity index 100%
rename from lmt-analysis/LMT/lmtanalysis/BuildEventRear5.py
rename to EMT/lmtanalysis/BuildEventRear5.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventRearCenterPeriphery.py b/EMT/lmtanalysis/BuildEventRearCenterPeriphery.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventRearCenterPeriphery.py
rename to EMT/lmtanalysis/BuildEventRearCenterPeriphery.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSAP.py b/EMT/lmtanalysis/BuildEventSAP.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSAP.py
rename to EMT/lmtanalysis/BuildEventSAP.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSAP_oldv.py b/EMT/lmtanalysis/BuildEventSAP_oldv.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSAP_oldv.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSideBySide.py b/EMT/lmtanalysis/BuildEventSideBySide.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSideBySide.py
rename to EMT/lmtanalysis/BuildEventSideBySide.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSideBySideOpposite.py b/EMT/lmtanalysis/BuildEventSideBySideOpposite.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSideBySideOpposite.py
rename to EMT/lmtanalysis/BuildEventSideBySideOpposite.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSideWalk.py b/EMT/lmtanalysis/BuildEventSideWalk.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSideWalk.py
rename to EMT/lmtanalysis/BuildEventSideWalk.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSocialApproach.py b/EMT/lmtanalysis/BuildEventSocialApproach.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSocialApproach.py
rename to EMT/lmtanalysis/BuildEventSocialApproach.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventSocialEscape.py b/EMT/lmtanalysis/BuildEventSocialEscape.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventSocialEscape.py
rename to EMT/lmtanalysis/BuildEventSocialEscape.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventStop.py b/EMT/lmtanalysis/BuildEventStop.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventStop.py
rename to EMT/lmtanalysis/BuildEventStop.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventTrain2.py b/EMT/lmtanalysis/BuildEventTrain2.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventTrain2.py
rename to EMT/lmtanalysis/BuildEventTrain2.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventTrain3.py b/EMT/lmtanalysis/BuildEventTrain3.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventTrain3.py
rename to EMT/lmtanalysis/BuildEventTrain3.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventTrain4.py b/EMT/lmtanalysis/BuildEventTrain4.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventTrain4.py
rename to EMT/lmtanalysis/BuildEventTrain4.py
diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventWallJump.py b/EMT/lmtanalysis/BuildEventWallJump.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventWallJump.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventWallJump_oldv.py b/EMT/lmtanalysis/BuildEventWallJump_oldv.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventWallJump_oldv.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/BuildEventWaterPoint.py b/EMT/lmtanalysis/BuildEventWaterPoint.py
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rename from lmt-analysis/LMT/lmtanalysis/BuildEventWaterPoint.py
rename to EMT/lmtanalysis/BuildEventWaterPoint.py
diff --git a/lmt-analysis/LMT/lmtanalysis/CheckWrongAnimal.py b/EMT/lmtanalysis/CheckWrongAnimal.py
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rename from lmt-analysis/LMT/lmtanalysis/CheckWrongAnimal.py
rename to EMT/lmtanalysis/CheckWrongAnimal.py
diff --git a/lmt-analysis/LMT/lmtanalysis/Chronometer.py b/EMT/lmtanalysis/Chronometer.py
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rename from lmt-analysis/LMT/lmtanalysis/Chronometer.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/CorrectDetectionIntegrity.py b/EMT/lmtanalysis/CorrectDetectionIntegrity.py
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rename from lmt-analysis/LMT/lmtanalysis/CorrectDetectionIntegrity.py
rename to EMT/lmtanalysis/CorrectDetectionIntegrity.py
diff --git a/lmt-analysis/LMT/lmtanalysis/Detection.py b/EMT/lmtanalysis/Detection.py
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rename from lmt-analysis/LMT/lmtanalysis/Detection.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Event.py b/EMT/lmtanalysis/Event.py
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rename from lmt-analysis/LMT/lmtanalysis/Event.py
rename to EMT/lmtanalysis/Event.py
diff --git a/lmt-analysis/LMT/lmtanalysis/EventTimeLineCache.py b/EMT/lmtanalysis/EventTimeLineCache.py
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rename from lmt-analysis/LMT/lmtanalysis/EventTimeLineCache.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/FileUtil.py b/EMT/lmtanalysis/FileUtil.py
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rename from lmt-analysis/LMT/lmtanalysis/FileUtil.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Mask.py b/EMT/lmtanalysis/Mask.py
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rename from lmt-analysis/LMT/lmtanalysis/Mask.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Measure.py b/EMT/lmtanalysis/Measure.py
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rename from lmt-analysis/LMT/lmtanalysis/Measure.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/MeasureOld.py b/EMT/lmtanalysis/MeasureOld.py
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rename from lmt-analysis/LMT/lmtanalysis/MeasureOld.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Parameters.py b/EMT/lmtanalysis/Parameters.py
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rename from lmt-analysis/LMT/lmtanalysis/Parameters.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/ParametersMouse.py b/EMT/lmtanalysis/ParametersMouse.py
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rename from lmt-analysis/LMT/lmtanalysis/ParametersMouse.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/ParametersRat.py b/EMT/lmtanalysis/ParametersRat.py
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rename from lmt-analysis/LMT/lmtanalysis/ParametersRat.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Point.py b/EMT/lmtanalysis/Point.py
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rename from lmt-analysis/LMT/lmtanalysis/Point.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Rectangle.py b/EMT/lmtanalysis/Rectangle.py
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rename from lmt-analysis/LMT/lmtanalysis/Rectangle.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Settings.py b/EMT/lmtanalysis/Settings.py
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rename from lmt-analysis/LMT/lmtanalysis/Settings.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/TaskLogger.py b/EMT/lmtanalysis/TaskLogger.py
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rename from lmt-analysis/LMT/lmtanalysis/TaskLogger.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/Util.py b/EMT/lmtanalysis/Util.py
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rename from lmt-analysis/LMT/lmtanalysis/Util.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/__init__.py b/EMT/lmtanalysis/__init__.py
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rename from lmt-analysis/LMT/lmtanalysis/__init__.py
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diff --git a/lmt-analysis/LMT/lmtanalysis/split_database.py b/EMT/lmtanalysis/split_database.py
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rename from lmt-analysis/LMT/lmtanalysis/split_database.py
rename to EMT/lmtanalysis/split_database.py
diff --git a/lmt-analysis/LMT/scripts/AddFileInfo.py b/EMT/scripts/AddFileInfo.py
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rename from lmt-analysis/LMT/scripts/AddFileInfo.py
rename to EMT/scripts/AddFileInfo.py
diff --git a/lmt-analysis/LMT/scripts/AlterColBase.py b/EMT/scripts/AlterColBase.py
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rename from lmt-analysis/LMT/scripts/AlterColBase.py
rename to EMT/scripts/AlterColBase.py
diff --git a/lmt-analysis/LMT/scripts/AutoNightInput.ipynb b/EMT/scripts/AutoNightInput.ipynb
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rename from lmt-analysis/LMT/scripts/AutoNightInput.ipynb
rename to EMT/scripts/AutoNightInput.ipynb
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/BehaviouralSequences.iml b/EMT/scripts/BehaviouralSequences/.idea/BehaviouralSequences.iml
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/BehaviouralSequences.iml
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diff --git a/lmt-analysis/.idea/inspectionProfiles/profiles_settings.xml b/EMT/scripts/BehaviouralSequences/.idea/inspectionProfiles/profiles_settings.xml
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rename from lmt-analysis/.idea/inspectionProfiles/profiles_settings.xml
rename to EMT/scripts/BehaviouralSequences/.idea/inspectionProfiles/profiles_settings.xml
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/modules.xml b/EMT/scripts/BehaviouralSequences/.idea/modules.xml
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/modules.xml
rename to EMT/scripts/BehaviouralSequences/.idea/modules.xml
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/workspace.xml b/EMT/scripts/BehaviouralSequences/.idea/workspace.xml
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/workspace.xml
rename to EMT/scripts/BehaviouralSequences/.idea/workspace.xml
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/CheckEventsForSequences.py b/EMT/scripts/BehaviouralSequences/CheckEventsForSequences.py
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/CheckEventsForSequences.py
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diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/CompareProfileInitialExclusiveEvents.py b/EMT/scripts/BehaviouralSequences/CompareProfileInitialExclusiveEvents.py
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/CompareProfileInitialExclusiveEvents.py
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diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/ComputeTransitionsBetweenEvents.py b/EMT/scripts/BehaviouralSequences/ComputeTransitionsBetweenEvents.py
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/ComputeTransitionsBetweenEvents.py
rename to EMT/scripts/BehaviouralSequences/ComputeTransitionsBetweenEvents.py
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/ExclusivePattern.py b/EMT/scripts/BehaviouralSequences/ExclusivePattern.py
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rename from lmt-analysis/LMT/scripts/BehaviouralSequences/ExclusivePattern.py
rename to EMT/scripts/BehaviouralSequences/ExclusivePattern.py
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/ExtractEventTableFromDatabase.py b/EMT/scripts/BehaviouralSequences/ExtractEventTableFromDatabase.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/BehaviouralSequences/ExtractEventTableFromDatabase.py
rename to EMT/scripts/BehaviouralSequences/ExtractEventTableFromDatabase.py
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/__init__.py b/EMT/scripts/BehaviouralSequences/__init__.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/BehaviouralSequences/__init__.py
rename to EMT/scripts/BehaviouralSequences/__init__.py
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/mygraph.html b/EMT/scripts/BehaviouralSequences/mygraph.html
similarity index 100%
rename from lmt-analysis/LMT/scripts/BehaviouralSequences/mygraph.html
rename to EMT/scripts/BehaviouralSequences/mygraph.html
diff --git a/lmt-analysis/LMT/scripts/BuildDataBaseIndex.py b/EMT/scripts/BuildDataBaseIndex.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/BuildDataBaseIndex.py
rename to EMT/scripts/BuildDataBaseIndex.py
diff --git a/lmt-analysis/LMT/scripts/Check_Experiment_Reliability.py b/EMT/scripts/Check_Experiment_Reliability.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Check_Experiment_Reliability.py
rename to EMT/scripts/Check_Experiment_Reliability.py
diff --git a/lmt-analysis/LMT/scripts/ComputeMeanSpeedPerEvent.py b/EMT/scripts/ComputeMeanSpeedPerEvent.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ComputeMeanSpeedPerEvent.py
rename to EMT/scripts/ComputeMeanSpeedPerEvent.py
diff --git a/lmt-analysis/LMT/scripts/ComputeMeasuresIdentityProfileOneMouseAuto.ipynb b/EMT/scripts/ComputeMeasuresIdentityProfileOneMouseAuto.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/ComputeMeasuresIdentityProfileOneMouseAuto.ipynb
rename to EMT/scripts/ComputeMeasuresIdentityProfileOneMouseAuto.ipynb
diff --git a/lmt-analysis/LMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomatic.py b/EMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomatic.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomatic.py
rename to EMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomatic.py
diff --git a/lmt-analysis/LMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomaticPerIndividual.py b/EMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomaticPerIndividual.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomaticPerIndividual.py
rename to EMT/scripts/ComputeMeasuresIdentityProfileOneMouseAutomaticPerIndividual.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Contact_Out_Of_Nest_Zone.py b/EMT/scripts/Compute_Contact_Out_Of_Nest_Zone.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Contact_Out_Of_Nest_Zone.py
rename to EMT/scripts/Compute_Contact_Out_Of_Nest_Zone.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Distance_Lg_Term_Timebin.py b/EMT/scripts/Compute_Distance_Lg_Term_Timebin.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Distance_Lg_Term_Timebin.py
rename to EMT/scripts/Compute_Distance_Lg_Term_Timebin.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Event_Duration_Distribution.py b/EMT/scripts/Compute_Event_Duration_Distribution.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Event_Duration_Distribution.py
rename to EMT/scripts/Compute_Event_Duration_Distribution.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Individual_Profiles_Mixed_Genotypes.py b/EMT/scripts/Compute_Individual_Profiles_Mixed_Genotypes.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Individual_Profiles_Mixed_Genotypes.py
rename to EMT/scripts/Compute_Individual_Profiles_Mixed_Genotypes.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Link_Make_Break_Group3.py b/EMT/scripts/Compute_Link_Make_Break_Group3.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Link_Make_Break_Group3.py
rename to EMT/scripts/Compute_Link_Make_Break_Group3.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Link_Make_Break_Group4.py b/EMT/scripts/Compute_Link_Make_Break_Group4.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Link_Make_Break_Group4.py
rename to EMT/scripts/Compute_Link_Make_Break_Group4.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Make_Break_Group3.py b/EMT/scripts/Compute_Make_Break_Group3.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Make_Break_Group3.py
rename to EMT/scripts/Compute_Make_Break_Group3.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Make_Break_Group4.py b/EMT/scripts/Compute_Make_Break_Group4.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Make_Break_Group4.py
rename to EMT/scripts/Compute_Make_Break_Group4.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Manual_Validation.py b/EMT/scripts/Compute_Manual_Validation.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Manual_Validation.py
rename to EMT/scripts/Compute_Manual_Validation.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile.py b/EMT/scripts/Compute_Measures_Identity_Profile.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile.py
rename to EMT/scripts/Compute_Measures_Identity_Profile.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Dyadic.py b/EMT/scripts/Compute_Measures_Identity_Profile_Dyadic.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Dyadic.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_Dyadic.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Mixed_Geno_Groups.py b/EMT/scripts/Compute_Measures_Identity_Profile_Mixed_Geno_Groups.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Mixed_Geno_Groups.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_Mixed_Geno_Groups.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_OneMouse.py b/EMT/scripts/Compute_Measures_Identity_Profile_OneMouse.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_OneMouse.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_OneMouse.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_OneMouse_During_Night.py b/EMT/scripts/Compute_Measures_Identity_Profile_OneMouse_During_Night.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_OneMouse_During_Night.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_OneMouse_During_Night.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Pairs.py b/EMT/scripts/Compute_Measures_Identity_Profile_Pairs.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Pairs.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_Pairs.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Single_Object_Explo.py b/EMT/scripts/Compute_Measures_Identity_Profile_Single_Object_Explo.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Single_Object_Explo.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_Single_Object_Explo.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Social_Recognition.py b/EMT/scripts/Compute_Measures_Identity_Profile_Social_Recognition.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Measures_Identity_Profile_Social_Recognition.py
rename to EMT/scripts/Compute_Measures_Identity_Profile_Social_Recognition.py
diff --git a/lmt-analysis/LMT/scripts/Compute_OnHouseStats.py b/EMT/scripts/Compute_OnHouseStats.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_OnHouseStats.py
rename to EMT/scripts/Compute_OnHouseStats.py
diff --git a/lmt-analysis/LMT/scripts/Compute_OnHouseTimelines.py b/EMT/scripts/Compute_OnHouseTimelines.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_OnHouseTimelines.py
rename to EMT/scripts/Compute_OnHouseTimelines.py
diff --git a/lmt-analysis/LMT/scripts/Compute_Proportions_Group3.py b/EMT/scripts/Compute_Proportions_Group3.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Compute_Proportions_Group3.py
rename to EMT/scripts/Compute_Proportions_Group3.py
diff --git a/lmt-analysis/LMT/scripts/ExportAnimalListFromJsonResultFile.py b/EMT/scripts/ExportAnimalListFromJsonResultFile.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ExportAnimalListFromJsonResultFile.py
rename to EMT/scripts/ExportAnimalListFromJsonResultFile.py
diff --git a/lmt-analysis/LMT/scripts/ExportResultsDyadicToCSV.py b/EMT/scripts/ExportResultsDyadicToCSV.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ExportResultsDyadicToCSV.py
rename to EMT/scripts/ExportResultsDyadicToCSV.py
diff --git a/lmt-analysis/LMT/scripts/ExportResultsOpenField.py b/EMT/scripts/ExportResultsOpenField.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ExportResultsOpenField.py
rename to EMT/scripts/ExportResultsOpenField.py
diff --git a/lmt-analysis/LMT/scripts/ExportResultsToCSV.py b/EMT/scripts/ExportResultsToCSV.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ExportResultsToCSV.py
rename to EMT/scripts/ExportResultsToCSV.py
diff --git a/lmt-analysis/LMT/scripts/Inter animal interaction matrix.py b/EMT/scripts/Inter animal interaction matrix.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Inter animal interaction matrix.py
rename to EMT/scripts/Inter animal interaction matrix.py
diff --git a/lmt-analysis/LMT/scripts/ManualNightInput.ipynb b/EMT/scripts/ManualNightInput.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/ManualNightInput.ipynb
rename to EMT/scripts/ManualNightInput.ipynb
diff --git a/lmt-analysis/LMT/scripts/ManualNightInput.py b/EMT/scripts/ManualNightInput.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ManualNightInput.py
rename to EMT/scripts/ManualNightInput.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorOpenfield.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorOpenfield.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorOpenfield.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorOpenfield.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTest.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTest.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTest.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTest.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTestRedCage.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTestRedCage.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTestRedCage.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTestRedCage.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysis.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysis.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysis.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysis.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisGenotypeComparison.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisGenotypeComparison.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisGenotypeComparison.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisGenotypeComparison.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisObjectComparisons.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisObjectComparisons.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisObjectComparisons.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeNORAnalysisObjectComparisons.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognition.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognition.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognition.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognition.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognitionNorRedCage.py b/EMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognitionNorRedCage.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognitionNorRedCage.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ComputeObjectRecognitionNorRedCage.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ConfigurationNOR.py b/EMT/scripts/Novel_Object_Recognition_Test/ConfigurationNOR.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/ConfigurationNOR.py
rename to EMT/scripts/Novel_Object_Recognition_Test/ConfigurationNOR.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/checkObjectPreference.py b/EMT/scripts/Novel_Object_Recognition_Test/checkObjectPreference.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/checkObjectPreference.py
rename to EMT/scripts/Novel_Object_Recognition_Test/checkObjectPreference.py
diff --git a/lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/computeManualScoringNOR.py b/EMT/scripts/Novel_Object_Recognition_Test/computeManualScoringNOR.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Novel_Object_Recognition_Test/computeManualScoringNOR.py
rename to EMT/scripts/Novel_Object_Recognition_Test/computeManualScoringNOR.py
diff --git a/lmt-analysis/LMT/scripts/Plot Heat Map.ipynb b/EMT/scripts/Plot Heat Map.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/Plot Heat Map.ipynb
rename to EMT/scripts/Plot Heat Map.ipynb
diff --git a/lmt-analysis/LMT/scripts/PlotFigurePairsBothSexes.py b/EMT/scripts/PlotFigurePairsBothSexes.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotFigurePairsBothSexes.py
rename to EMT/scripts/PlotFigurePairsBothSexes.py
diff --git a/lmt-analysis/LMT/scripts/PlotFigureProfilesAuto.py b/EMT/scripts/PlotFigureProfilesAuto.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotFigureProfilesAuto.py
rename to EMT/scripts/PlotFigureProfilesAuto.py
diff --git a/lmt-analysis/LMT/scripts/PlotSensorData.py b/EMT/scripts/PlotSensorData.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotSensorData.py
rename to EMT/scripts/PlotSensorData.py
diff --git a/lmt-analysis/LMT/scripts/PlotTimeLineActivity.py b/EMT/scripts/PlotTimeLineActivity.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotTimeLineActivity.py
rename to EMT/scripts/PlotTimeLineActivity.py
diff --git a/lmt-analysis/LMT/scripts/PlotTimeLineActivityAutomatic.ipynb b/EMT/scripts/PlotTimeLineActivityAutomatic.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotTimeLineActivityAutomatic.ipynb
rename to EMT/scripts/PlotTimeLineActivityAutomatic.ipynb
diff --git a/lmt-analysis/LMT/scripts/PlotTimeLineActivityAutomatic.py b/EMT/scripts/PlotTimeLineActivityAutomatic.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotTimeLineActivityAutomatic.py
rename to EMT/scripts/PlotTimeLineActivityAutomatic.py
diff --git a/lmt-analysis/LMT/scripts/PlotTimeLineCumulativeWaterPoint.py b/EMT/scripts/PlotTimeLineCumulativeWaterPoint.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/PlotTimeLineCumulativeWaterPoint.py
rename to EMT/scripts/PlotTimeLineCumulativeWaterPoint.py
diff --git a/lmt-analysis/LMT/scripts/Plot_Activity_Interlab_Study_First_4h.py b/EMT/scripts/Plot_Activity_Interlab_Study_First_4h.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Plot_Activity_Interlab_Study_First_4h.py
rename to EMT/scripts/Plot_Activity_Interlab_Study_First_4h.py
diff --git a/lmt-analysis/LMT/scripts/Plot_Figure_Activity_NOR_habituation_group_monitoring.py b/EMT/scripts/Plot_Figure_Activity_NOR_habituation_group_monitoring.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Plot_Figure_Activity_NOR_habituation_group_monitoring.py
rename to EMT/scripts/Plot_Figure_Activity_NOR_habituation_group_monitoring.py
diff --git a/lmt-analysis/LMT/scripts/Plot_Trajectory_Single_Object_Explo.py b/EMT/scripts/Plot_Trajectory_Single_Object_Explo.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Plot_Trajectory_Single_Object_Explo.py
rename to EMT/scripts/Plot_Trajectory_Single_Object_Explo.py
diff --git a/lmt-analysis/LMT/scripts/Rebuild all events.ipynb b/EMT/scripts/Rebuild all events.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/Rebuild all events.ipynb
rename to EMT/scripts/Rebuild all events.ipynb
diff --git a/lmt-analysis/LMT/scripts/Rebuild_All_Events.py b/EMT/scripts/Rebuild_All_Events.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Rebuild_All_Events.py
rename to EMT/scripts/Rebuild_All_Events.py
diff --git a/lmt-analysis/LMT/scripts/Rebuild_All_Exclusive_Contact_Events.py b/EMT/scripts/Rebuild_All_Exclusive_Contact_Events.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Rebuild_All_Exclusive_Contact_Events.py
rename to EMT/scripts/Rebuild_All_Exclusive_Contact_Events.py
diff --git a/lmt-analysis/LMT/scripts/Rebuild_All_Profile_Relative.py b/EMT/scripts/Rebuild_All_Profile_Relative.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Rebuild_All_Profile_Relative.py
rename to EMT/scripts/Rebuild_All_Profile_Relative.py
diff --git a/lmt-analysis/LMT/scripts/Rebuild_All_Profile_deprecated.py b/EMT/scripts/Rebuild_All_Profile_deprecated.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Rebuild_All_Profile_deprecated.py
rename to EMT/scripts/Rebuild_All_Profile_deprecated.py
diff --git a/lmt-analysis/LMT/scripts/Rebuild_info_mice.py b/EMT/scripts/Rebuild_info_mice.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/Rebuild_info_mice.py
rename to EMT/scripts/Rebuild_info_mice.py
diff --git a/lmt-analysis/LMT/scripts/SemiAutomaticNightInput.py b/EMT/scripts/SemiAutomaticNightInput.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/SemiAutomaticNightInput.py
rename to EMT/scripts/SemiAutomaticNightInput.py
diff --git a/lmt-analysis/LMT/scripts/SetGenotype.ipynb b/EMT/scripts/SetGenotype.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/SetGenotype.ipynb
rename to EMT/scripts/SetGenotype.ipynb
diff --git a/lmt-analysis/LMT/scripts/Show Sensor Data.ipynb b/EMT/scripts/Show Sensor Data.ipynb
similarity index 100%
rename from lmt-analysis/LMT/scripts/Show Sensor Data.ipynb
rename to EMT/scripts/Show Sensor Data.ipynb
diff --git a/lmt-analysis/LMT/scripts/ShowLog.py b/EMT/scripts/ShowLog.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/ShowLog.py
rename to EMT/scripts/ShowLog.py
diff --git a/lmt-analysis/LMT/scripts/__init__.py b/EMT/scripts/__init__.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/__init__.py
rename to EMT/scripts/__init__.py
diff --git a/lmt-analysis/LMT/scripts/checkMove.py b/EMT/scripts/checkMove.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/checkMove.py
rename to EMT/scripts/checkMove.py
diff --git a/lmt-analysis/LMT/scripts/checkTimeLine.py b/EMT/scripts/checkTimeLine.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/checkTimeLine.py
rename to EMT/scripts/checkTimeLine.py
diff --git a/lmt-analysis/LMT/scripts/fix_RFID.py b/EMT/scripts/fix_RFID.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/fix_RFID.py
rename to EMT/scripts/fix_RFID.py
diff --git a/lmt-analysis/LMT/scripts/nightInputFromSensor.py b/EMT/scripts/nightInputFromSensor.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/nightInputFromSensor.py
rename to EMT/scripts/nightInputFromSensor.py
diff --git a/lmt-analysis/LMT/scripts/sensor/__init__.py b/EMT/scripts/sensor/__init__.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/sensor/__init__.py
rename to EMT/scripts/sensor/__init__.py
diff --git a/lmt-analysis/LMT/scripts/sensor/plotSensorData.py b/EMT/scripts/sensor/plotSensorData.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/sensor/plotSensorData.py
rename to EMT/scripts/sensor/plotSensorData.py
diff --git a/lmt-analysis/LMT/scripts/tools/RecoverFrame.py b/EMT/scripts/tools/RecoverFrame.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/tools/RecoverFrame.py
rename to EMT/scripts/tools/RecoverFrame.py
diff --git a/lmt-analysis/LMT/scripts/tools/__init__.py b/EMT/scripts/tools/__init__.py
similarity index 100%
rename from lmt-analysis/LMT/scripts/tools/__init__.py
rename to EMT/scripts/tools/__init__.py
diff --git a/lmt-analysis/LMT/setup.py b/EMT/setup.py
similarity index 100%
rename from lmt-analysis/LMT/setup.py
rename to EMT/setup.py
diff --git a/lmt-analysis/LICENSE b/LICENSE
similarity index 100%
rename from lmt-analysis/LICENSE
rename to LICENSE
diff --git a/lmt-analysis/README.md b/README.md
similarity index 100%
rename from lmt-analysis/README.md
rename to README.md
diff --git a/lmt-analysis/.idea/.gitignore b/lmt-analysis/.idea/.gitignore
deleted file mode 100644
index 26d3352..0000000
--- a/lmt-analysis/.idea/.gitignore
+++ /dev/null
@@ -1,3 +0,0 @@
-# Default ignored files
-/shelf/
-/workspace.xml
diff --git a/lmt-analysis/.idea/codestream.xml b/lmt-analysis/.idea/codestream.xml
deleted file mode 100644
index 4c83dd3..0000000
--- a/lmt-analysis/.idea/codestream.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
- <component name="CodeStream">
- <option name="webViewContext" value="{"chatProviderAccess":"strict","newPostEntryPoint":"JB Commit Detected","currentTeamId":"6391e6a1d578ac141251fbf7","currentStreamId":"","pullRequestCheckoutBranch":false,"isRepositioning":false,"onboardStep":0,"panelStack":["landing-redirect"],"hasFocus":true,"channelFilter":"all","channelsMuteAll":false,"codemarkFileFilter":"all","codemarkTypeFilter":"all","codemarkTagFilter":"all","codemarkBranchFilter":"all","codemarkAuthorFilter":"all","codemarksFileViewStyle":"inline","codemarksShowArchived":false,"codemarksShowResolved":false,"codemarksWrapComments":false,"showFeedbackSmiley":true,"route":{"name":"newUserEntry","params":{}},"spatialViewShowPRComments":false,"currentPullRequestNeedsRefresh":{"needsRefresh":false,"providerId":"","pullRequestId":""},"__teamless__":{"selectedRegion":"us"},"sessionStart":1676036216924,"isFirstPageview":false,"currentReviewOptions":{"includeLatestCommit":true},"currentReviewId":""}" />
- </component>
-</project>
\ No newline at end of file
diff --git a/lmt-analysis/.idea/lmt-analysis.iml b/lmt-analysis/.idea/lmt-analysis.iml
deleted file mode 100644
index a71721b..0000000
--- a/lmt-analysis/.idea/lmt-analysis.iml
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<module type="PYTHON_MODULE" version="4">
- <component name="NewModuleRootManager">
- <content url="file://$MODULE_DIR$">
- <sourceFolder url="file://$MODULE_DIR$" isTestSource="false" />
- <sourceFolder url="file://$MODULE_DIR$/LMT" isTestSource="false" />
- <sourceFolder url="file://$MODULE_DIR$/LMT/experimental" isTestSource="false" />
- <sourceFolder url="file://$MODULE_DIR$/LMT/lmtanalysis" isTestSource="false" />
- <sourceFolder url="file://$MODULE_DIR$/LMT/scripts" isTestSource="false" />
- </content>
- <orderEntry type="jdk" jdkName="Python 3.8 (lmt-analysis)" jdkType="Python SDK" />
- <orderEntry type="sourceFolder" forTests="false" />
- </component>
- <component name="PyDocumentationSettings">
- <option name="format" value="PLAIN" />
- <option name="myDocStringFormat" value="Plain" />
- </component>
-</module>
\ No newline at end of file
diff --git a/lmt-analysis/.idea/misc.xml b/lmt-analysis/.idea/misc.xml
deleted file mode 100644
index 8e9e65e..0000000
--- a/lmt-analysis/.idea/misc.xml
+++ /dev/null
@@ -1,4 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
- <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.8 (lmt-analysis)" project-jdk-type="Python SDK" />
-</project>
\ No newline at end of file
diff --git a/lmt-analysis/.idea/modules.xml b/lmt-analysis/.idea/modules.xml
deleted file mode 100644
index e3f28c0..0000000
--- a/lmt-analysis/.idea/modules.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
- <component name="ProjectModuleManager">
- <modules>
- <module fileurl="file://$PROJECT_DIR$/.idea/lmt-analysis.iml" filepath="$PROJECT_DIR$/.idea/lmt-analysis.iml" />
- </modules>
- </component>
-</project>
\ No newline at end of file
diff --git a/lmt-analysis/.idea/vcs.xml b/lmt-analysis/.idea/vcs.xml
deleted file mode 100644
index 94a25f7..0000000
--- a/lmt-analysis/.idea/vcs.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
- <component name="VcsDirectoryMappings">
- <mapping directory="$PROJECT_DIR$" vcs="Git" />
- </component>
-</project>
\ No newline at end of file
diff --git a/lmt-analysis/.project b/lmt-analysis/.project
deleted file mode 100644
index b66a092..0000000
--- a/lmt-analysis/.project
+++ /dev/null
@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<projectDescription>
- <name>lmt-analysis</name>
- <comment></comment>
- <projects>
- <project>USV-analysis</project>
- </projects>
- <buildSpec>
- <buildCommand>
- <name>org.python.pydev.PyDevBuilder</name>
- <arguments>
- </arguments>
- </buildCommand>
- </buildSpec>
- <natures>
- <nature>org.python.pydev.pythonNature</nature>
- </natures>
-</projectDescription>
diff --git a/lmt-analysis/.pydevproject b/lmt-analysis/.pydevproject
deleted file mode 100644
index f1a73a7..0000000
--- a/lmt-analysis/.pydevproject
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<?eclipse-pydev version="1.0"?><pydev_project>
-
- <pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Default</pydev_property>
-
- <pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python interpreter</pydev_property>
-
- <pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH">
- <path>/${PROJECT_DIR_NAME}/LMT</path>
- <path>/${PROJECT_DIR_NAME}</path>
- </pydev_pathproperty>
-</pydev_project>
diff --git a/lmt-analysis/.settings/org.eclipse.core.resources.prefs b/lmt-analysis/.settings/org.eclipse.core.resources.prefs
deleted file mode 100644
index 4d92ab9..0000000
--- a/lmt-analysis/.settings/org.eclipse.core.resources.prefs
+++ /dev/null
@@ -1,5 +0,0 @@
-eclipse.preferences.version=1
-encoding//LMT/lmtanalysis/AnimalType.py=UTF-8
-encoding//LMT/lmtanalysis/Parameters.py=UTF-8
-encoding//LMT/scripts/Novel_Object_Recognition_Test/ComputeActivityHabituationNorTestRedCage.py=UTF-8
-encoding/<project>=UTF-8
diff --git a/lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/inspectionProfiles/profiles_settings.xml b/lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/inspectionProfiles/profiles_settings.xml
deleted file mode 100644
index 105ce2d..0000000
--- a/lmt-analysis/LMT/scripts/BehaviouralSequences/.idea/inspectionProfiles/profiles_settings.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<component name="InspectionProjectProfileManager">
- <settings>
- <option name="USE_PROJECT_PROFILE" value="false" />
- <version value="1.0" />
- </settings>
-</component>
\ No newline at end of file
--
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