From 7b3e656c2acfcd495cc006f7d69b9d8e5277f4dd Mon Sep 17 00:00:00 2001
From: ferrari <maxence.ferrari@gmail.com>
Date: Wed, 9 Feb 2022 11:11:12 +0100
Subject: [PATCH] Add smart method
---
README.md | 6 +-
c_corr.c | 17142 ++++++++++++++++++++++++++++++++--------
c_corr.pyx | 79 +-
cython_setup.py | 2 +-
gsrp_smart_util.py | 143 +
gsrp_tdoa_hyperres.py | 30 +-
6 files changed, 14216 insertions(+), 3186 deletions(-)
mode change 100755 => 100644 c_corr.c
create mode 100644 gsrp_smart_util.py
diff --git a/README.md b/README.md
index 9ee0488..860be2d 100644
--- a/README.md
+++ b/README.md
@@ -76,7 +76,7 @@ Other:
-e, --erase Erase existing outfile. If outfile exist and --erase
is not provide, the script will exit.
-n, --no-hyperres Disable the hyper resolution evalutation of the TDOA
- -M {estimate,auto,on-the-fly,prepare}, --mode {estimate,auto,on-the-fly,prepare}
+ -M {smart,auto,on-the-fly,prepare}, --mode {smart,auto,on-the-fly,prepare}
How to explore the TDOA space (default: prepare).
'prepare' precomputes all the possible TDOA
pairs and then evaluate them. All the results are save
@@ -84,8 +84,8 @@ Other:
'on-the-fly' compute the TDOA pairs at the same
time as it compute the loss function. Only the maximum
is saved. Can be slower than 'prepare'.
- 'estimate' try to reduce the number of TDOA to
- evaluate.
+ 'smart' gradually increase the search space dimension, '
+ reducing the number of tdoa to evaluate.
'auto' automatically try to pick the right
method.
diff --git a/c_corr.c b/c_corr.c
old mode 100755
new mode 100644
index 59e6006..5a4de33
--- a/c_corr.c
+++ b/c_corr.c
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.29.15 */
+/* Generated by Cython 0.29.24 */
/* BEGIN: Cython Metadata
{
@@ -12,16 +12,18 @@
}
END: Cython Metadata */
+#ifndef PY_SSIZE_T_CLEAN
#define PY_SSIZE_T_CLEAN
+#endif /* PY_SSIZE_T_CLEAN */
#include "Python.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
#error Cython requires Python 2.6+ or Python 3.3+.
#else
-#define CYTHON_ABI "0_29_15"
-#define CYTHON_HEX_VERSION 0x001D0FF0
-#define CYTHON_FUTURE_DIVISION 0
+#define CYTHON_ABI "0_29_24"
+#define CYTHON_HEX_VERSION 0x001D18F0
+#define CYTHON_FUTURE_DIVISION 1
#include <stddef.h>
#ifndef offsetof
#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
@@ -438,8 +440,12 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
#define CYTHON_PEP393_ENABLED 1
+ #if defined(PyUnicode_IS_READY)
#define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
0 : _PyUnicode_Ready((PyObject *)(op)))
+ #else
+ #define __Pyx_PyUnicode_READY(op) (0)
+ #endif
#define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
#define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
#define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
@@ -447,7 +453,15 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
#define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
#define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
#define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
+ #if defined(PyUnicode_IS_READY) && defined(PyUnicode_GET_SIZE)
+ #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000
+ #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length))
+ #else
#define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
+ #endif
+ #else
+ #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u))
+ #endif
#else
#define CYTHON_PEP393_ENABLED 0
#define PyUnicode_1BYTE_KIND 1
@@ -496,8 +510,10 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
#define PyString_Type PyUnicode_Type
#define PyString_Check PyUnicode_Check
#define PyString_CheckExact PyUnicode_CheckExact
+#ifndef PyObject_Unicode
#define PyObject_Unicode PyObject_Str
#endif
+#endif
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
#define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
@@ -508,6 +524,13 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
#ifndef PySet_CheckExact
#define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
#endif
+#if PY_VERSION_HEX >= 0x030900A4
+ #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt)
+ #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size)
+#else
+ #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt)
+ #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size)
+#endif
#if CYTHON_ASSUME_SAFE_MACROS
#define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq)
#else
@@ -547,7 +570,7 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
#define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
- #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func))
+ #define __Pyx_PyMethod_New(func, self, klass) ((self) ? ((void)(klass), PyMethod_New(func, self)) : __Pyx_NewRef(func))
#else
#define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
@@ -588,11 +611,10 @@ static CYTHON_INLINE float __PYX_NAN() {
#define __Pyx_truncl truncl
#endif
-
+#define __PYX_MARK_ERR_POS(f_index, lineno) \
+ { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
#define __PYX_ERR(f_index, lineno, Ln_error) \
-{ \
- __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
-}
+ { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }
#ifndef __PYX_EXTERN_C
#ifdef __cplusplus
@@ -1352,7 +1374,7 @@ static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
Py_INCREF(x);
PyList_SET_ITEM(list, len, x);
- Py_SIZE(list) = len+1;
+ __Pyx_SET_SIZE(list, len + 1);
return 0;
}
return PyList_Append(list, x);
@@ -1434,6 +1456,232 @@ static CYTHON_INLINE int __pyx_sub_acquisition_count_locked(
static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int);
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int);
+/* Profile.proto */
+#ifndef CYTHON_PROFILE
+#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON
+ #define CYTHON_PROFILE 0
+#else
+ #define CYTHON_PROFILE 1
+#endif
+#endif
+#ifndef CYTHON_TRACE_NOGIL
+ #define CYTHON_TRACE_NOGIL 0
+#else
+ #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE)
+ #define CYTHON_TRACE 1
+ #endif
+#endif
+#ifndef CYTHON_TRACE
+ #define CYTHON_TRACE 0
+#endif
+#if CYTHON_TRACE
+ #undef CYTHON_PROFILE_REUSE_FRAME
+#endif
+#ifndef CYTHON_PROFILE_REUSE_FRAME
+ #define CYTHON_PROFILE_REUSE_FRAME 0
+#endif
+#if CYTHON_PROFILE || CYTHON_TRACE
+ #include "compile.h"
+ #include "frameobject.h"
+ #include "traceback.h"
+ #if CYTHON_PROFILE_REUSE_FRAME
+ #define CYTHON_FRAME_MODIFIER static
+ #define CYTHON_FRAME_DEL(frame)
+ #else
+ #define CYTHON_FRAME_MODIFIER
+ #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame)
+ #endif
+ #define __Pyx_TraceDeclarations\
+ static PyCodeObject *__pyx_frame_code = NULL;\
+ CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\
+ int __Pyx_use_tracing = 0;
+ #define __Pyx_TraceFrameInit(codeobj)\
+ if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj;
+#if PY_VERSION_HEX >= 0x030a00b1
+ #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\
+ (unlikely((tstate)->cframe->use_tracing) &&\
+ (!(check_tracing) || !(tstate)->tracing) &&\
+ (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc)))
+ #define __Pyx_SetTracing(tstate, enable)\
+ (tstate)->cframe->use_tracing = (enable)
+#else
+ #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\
+ (unlikely((tstate)->use_tracing) &&\
+ (!(check_tracing) || !(tstate)->tracing) &&\
+ (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc)))
+ #define __Pyx_SetTracing(tstate, enable)\
+ (tstate)->use_tracing = (enable)
+#endif
+ #ifdef WITH_THREAD
+ #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\
+ if (nogil) {\
+ if (CYTHON_TRACE_NOGIL) {\
+ PyThreadState *tstate;\
+ PyGILState_STATE state = PyGILState_Ensure();\
+ tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 1, 1)) {\
+ __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
+ }\
+ PyGILState_Release(state);\
+ if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
+ }\
+ } else {\
+ PyThreadState* tstate = PyThreadState_GET();\
+ if (__Pyx_IsTracing(tstate, 1, 1)) {\
+ __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
+ if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
+ }\
+ }
+ #else
+ #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\
+ { PyThreadState* tstate = PyThreadState_GET();\
+ if (__Pyx_IsTracing(tstate, 1, 1)) {\
+ __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
+ if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
+ }\
+ }
+ #endif
+ #define __Pyx_TraceException()\
+ if (likely(!__Pyx_use_tracing)); else {\
+ PyThreadState* tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 1)) {\
+ tstate->tracing++;\
+ __Pyx_SetTracing(tstate, 0);\
+ PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\
+ if (exc_info) {\
+ if (CYTHON_TRACE && tstate->c_tracefunc)\
+ tstate->c_tracefunc(\
+ tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\
+ tstate->c_profilefunc(\
+ tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\
+ Py_DECREF(exc_info);\
+ }\
+ __Pyx_SetTracing(tstate, 1);\
+ tstate->tracing--;\
+ }\
+ }
+ static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) {
+ PyObject *type, *value, *traceback;
+ __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
+ tstate->tracing++;
+ __Pyx_SetTracing(tstate, 0);
+ if (CYTHON_TRACE && tstate->c_tracefunc)
+ tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result);
+ if (tstate->c_profilefunc)
+ tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result);
+ CYTHON_FRAME_DEL(frame);
+ __Pyx_SetTracing(tstate, 1);
+ tstate->tracing--;
+ __Pyx_ErrRestoreInState(tstate, type, value, traceback);
+ }
+ #ifdef WITH_THREAD
+ #define __Pyx_TraceReturn(result, nogil)\
+ if (likely(!__Pyx_use_tracing)); else {\
+ if (nogil) {\
+ if (CYTHON_TRACE_NOGIL) {\
+ PyThreadState *tstate;\
+ PyGILState_STATE state = PyGILState_Ensure();\
+ tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 0)) {\
+ __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
+ }\
+ PyGILState_Release(state);\
+ }\
+ } else {\
+ PyThreadState* tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 0)) {\
+ __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
+ }\
+ }\
+ }
+ #else
+ #define __Pyx_TraceReturn(result, nogil)\
+ if (likely(!__Pyx_use_tracing)); else {\
+ PyThreadState* tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 0)) {\
+ __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
+ }\
+ }
+ #endif
+ static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno);
+ static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno);
+#else
+ #define __Pyx_TraceDeclarations
+ #define __Pyx_TraceFrameInit(codeobj)
+ #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error;
+ #define __Pyx_TraceException()
+ #define __Pyx_TraceReturn(result, nogil)
+#endif
+#if CYTHON_TRACE
+ static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) {
+ int ret;
+ PyObject *type, *value, *traceback;
+ __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
+ __Pyx_PyFrame_SetLineNumber(frame, lineno);
+ tstate->tracing++;
+ __Pyx_SetTracing(tstate, 0);
+ ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL);
+ __Pyx_SetTracing(tstate, 1);
+ tstate->tracing--;
+ if (likely(!ret)) {
+ __Pyx_ErrRestoreInState(tstate, type, value, traceback);
+ } else {
+ Py_XDECREF(type);
+ Py_XDECREF(value);
+ Py_XDECREF(traceback);
+ }
+ return ret;
+ }
+ #ifdef WITH_THREAD
+ #define __Pyx_TraceLine(lineno, nogil, goto_error)\
+ if (likely(!__Pyx_use_tracing)); else {\
+ if (nogil) {\
+ if (CYTHON_TRACE_NOGIL) {\
+ int ret = 0;\
+ PyThreadState *tstate;\
+ PyGILState_STATE state = PyGILState_Ensure();\
+ tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\
+ ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
+ }\
+ PyGILState_Release(state);\
+ if (unlikely(ret)) goto_error;\
+ }\
+ } else {\
+ PyThreadState* tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\
+ int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
+ if (unlikely(ret)) goto_error;\
+ }\
+ }\
+ }
+ #else
+ #define __Pyx_TraceLine(lineno, nogil, goto_error)\
+ if (likely(!__Pyx_use_tracing)); else {\
+ PyThreadState* tstate = __Pyx_PyThreadState_Current;\
+ if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\
+ int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
+ if (unlikely(ret)) goto_error;\
+ }\
+ }
+ #endif
+#else
+ #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error;
+#endif
+
+/* WriteUnraisableException.proto */
+static void __Pyx_WriteUnraisable(const char *name, int clineno,
+ int lineno, const char *filename,
+ int full_traceback, int nogil);
+
+/* PyIntBinop.proto */
+#if !CYTHON_COMPILING_IN_PYPY
+static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
+#else
+#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\
+ (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
+#endif
+
/* ArgTypeTest.proto */
#define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\
((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\
@@ -1566,7 +1814,7 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
if (likely(L->allocated > len)) {
Py_INCREF(x);
PyList_SET_ITEM(list, len, x);
- Py_SIZE(list) = len+1;
+ __Pyx_SET_SIZE(list, len + 1);
return 0;
}
return PyList_Append(list, x);
@@ -1625,13 +1873,16 @@ static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_nam
/* SetVTable.proto */
static int __Pyx_SetVtable(PyObject *dict, void *vtable);
+/* PyObjectGetAttrStrNoError.proto */
+static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name);
+
/* SetupReduce.proto */
static int __Pyx_setup_reduce(PyObject* type_obj);
/* FetchCommonType.proto */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
-/* CythonFunction.proto */
+/* CythonFunctionShared.proto */
#define __Pyx_CyFunction_USED 1
#define __Pyx_CYFUNCTION_STATICMETHOD 0x01
#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
@@ -1659,6 +1910,7 @@ typedef struct {
PyObject *func_classobj;
void *defaults;
int defaults_pyobjects;
+ size_t defaults_size; // used by FusedFunction for copying defaults
int flags;
PyObject *defaults_tuple;
PyObject *defaults_kwdict;
@@ -1667,9 +1919,7 @@ typedef struct {
} __pyx_CyFunctionObject;
static PyTypeObject *__pyx_CyFunctionType = 0;
#define __Pyx_CyFunction_Check(obj) (__Pyx_TypeCheck(obj, __pyx_CyFunctionType))
-#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\
- __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code)
-static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml,
+static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml,
int flags, PyObject* qualname,
PyObject *self,
PyObject *module, PyObject *globals,
@@ -1692,11 +1942,8 @@ typedef struct {
PyObject *type;
PyObject *self;
} __pyx_FusedFunctionObject;
-#define __pyx_FusedFunction_NewEx(ml, flags, qualname, self, module, globals, code)\
- __pyx_FusedFunction_New(__pyx_FusedFunctionType, ml, flags, qualname, self, module, globals, code)
-static PyObject *__pyx_FusedFunction_New(PyTypeObject *type,
- PyMethodDef *ml, int flags,
- PyObject *qualname, PyObject *self,
+static PyObject *__pyx_FusedFunction_New(PyMethodDef *ml, int flags,
+ PyObject *qualname, PyObject *closure,
PyObject *module, PyObject *globals,
PyObject *code);
static int __pyx_FusedFunction_clear(__pyx_FusedFunctionObject *self);
@@ -1796,9 +2043,6 @@ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_i
/* ObjectToMemviewSlice.proto */
static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_long(PyObject *, int writable_flag);
-/* ObjectToMemviewSlice.proto */
-static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_PY_LONG_LONG(PyObject *, int writable_flag);
-
/* ObjectToMemviewSlice.proto */
static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_float(PyObject *, int writable_flag);
@@ -1815,13 +2059,30 @@ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__i
static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__long(PyObject *, int writable_flag);
/* ObjectToMemviewSlice.proto */
-static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__PY_LONG_LONG(PyObject *, int writable_flag);
+static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_short(PyObject *, int writable_flag);
-/* CIntToPy.proto */
-static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
+/* ObjectToMemviewSlice.proto */
+static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_int(PyObject *, int writable_flag);
-/* CIntToPy.proto */
-static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
+/* ObjectToMemviewSlice.proto */
+static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_long(PyObject *, int writable_flag);
+
+/* GCCDiagnostics.proto */
+#if defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6))
+#define __Pyx_HAS_GCC_DIAGNOSTIC
+#endif
+
+/* MemviewDtypeToObject.proto */
+static CYTHON_INLINE PyObject *__pyx_memview_get_long(const char *itemp);
+static CYTHON_INLINE int __pyx_memview_set_long(const char *itemp, PyObject *obj);
+
+/* MemviewDtypeToObject.proto */
+static CYTHON_INLINE PyObject *__pyx_memview_get_short(const char *itemp);
+static CYTHON_INLINE int __pyx_memview_set_short(const char *itemp, PyObject *obj);
+
+/* MemviewDtypeToObject.proto */
+static CYTHON_INLINE PyObject *__pyx_memview_get_int(const char *itemp);
+static CYTHON_INLINE int __pyx_memview_set_int(const char *itemp, PyObject *obj);
/* MemviewSliceCopyTemplate.proto */
static __Pyx_memviewslice
@@ -1830,12 +2091,8 @@ __pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
size_t sizeof_dtype, int contig_flag,
int dtype_is_object);
-/* BytesContains.proto */
-static CYTHON_INLINE int __Pyx_BytesContains(PyObject* bytes, char character);
-
-/* ImportNumPyArray.proto */
-static PyObject *__pyx_numpy_ndarray = NULL;
-static PyObject* __Pyx_ImportNumPyArrayTypeIfAvailable(void);
+/* CIntFromPy.proto */
+static CYTHON_INLINE short __Pyx_PyInt_As_short(PyObject *);
/* CIntFromPy.proto */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
@@ -1843,6 +2100,22 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
/* CIntFromPy.proto */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
+/* CIntToPy.proto */
+static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
+
+/* CIntToPy.proto */
+static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
+
+/* CIntToPy.proto */
+static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value);
+
+/* BytesContains.proto */
+static CYTHON_INLINE int __Pyx_BytesContains(PyObject* bytes, char character);
+
+/* ImportNumPyArray.proto */
+static PyObject *__pyx_numpy_ndarray = NULL;
+static PyObject* __Pyx_ImportNumPyArrayTypeIfAvailable(void);
+
/* CIntFromPy.proto */
static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *);
@@ -1879,6 +2152,11 @@ static PyObject *contiguous = 0;
static PyObject *indirect_contiguous = 0;
static int __pyx_memoryview_thread_locks_used;
static PyThread_type_lock __pyx_memoryview_thread_locks[8];
+static long __pyx_f_6c_corr_moduloNeg(long, long); /*proto*/
+static double __pyx_f_6c_corr__c_corr_core(__Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, double, long, long, long, long, long); /*proto*/
+static PyObject *__pyx_fuse_0__pyx_f_6c_corr_c_corr_all(PyObject *, short, short, int __pyx_skip_dispatch); /*proto*/
+static PyObject *__pyx_fuse_1__pyx_f_6c_corr_c_corr_all(PyObject *, int, int, int __pyx_skip_dispatch); /*proto*/
+static PyObject *__pyx_fuse_2__pyx_f_6c_corr_c_corr_all(PyObject *, long, long, int __pyx_skip_dispatch); /*proto*/
static struct __pyx_array_obj *__pyx_array_new(PyObject *, Py_ssize_t, char *, char *, char *); /*proto*/
static void *__pyx_align_pointer(void *, size_t); /*proto*/
static PyObject *__pyx_memoryview_new(PyObject *, int, int, __Pyx_TypeInfo *); /*proto*/
@@ -1915,7 +2193,6 @@ static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *,
static __Pyx_TypeInfo __Pyx_TypeInfo_short = { "short", NULL, sizeof(short), { 0 }, 0, IS_UNSIGNED(short) ? 'U' : 'I', IS_UNSIGNED(short), 0 };
static __Pyx_TypeInfo __Pyx_TypeInfo_int = { "int", NULL, sizeof(int), { 0 }, 0, IS_UNSIGNED(int) ? 'U' : 'I', IS_UNSIGNED(int), 0 };
static __Pyx_TypeInfo __Pyx_TypeInfo_long = { "long", NULL, sizeof(long), { 0 }, 0, IS_UNSIGNED(long) ? 'U' : 'I', IS_UNSIGNED(long), 0 };
-static __Pyx_TypeInfo __Pyx_TypeInfo_PY_LONG_LONG = { "long long", NULL, sizeof(PY_LONG_LONG), { 0 }, 0, IS_UNSIGNED(PY_LONG_LONG) ? 'U' : 'I', IS_UNSIGNED(PY_LONG_LONG), 0 };
static __Pyx_TypeInfo __Pyx_TypeInfo_float = { "float", NULL, sizeof(float), { 0 }, 0, 'R', 0, 0 };
static __Pyx_TypeInfo __Pyx_TypeInfo_double = { "double", NULL, sizeof(double), { 0 }, 0, 'R', 0, 0 };
#define __Pyx_MODULE_NAME "c_corr"
@@ -1925,6 +2202,8 @@ int __pyx_module_is_main_c_corr = 0;
/* Implementation of 'c_corr' */
static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_range;
+static PyObject *__pyx_builtin_min;
+static PyObject *__pyx_builtin_max;
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_MemoryError;
static PyObject *__pyx_builtin_enumerate;
@@ -1939,11 +2218,16 @@ static const char __pyx_k_p[] = "p";
static const char __pyx_k_s[] = "s";
static const char __pyx_k__2[] = "|";
static const char __pyx_k_cc[] = "cc";
+static const char __pyx_k_i0[] = "i0";
static const char __pyx_k_id[] = "id";
+static const char __pyx_k_j0[] = "j0";
static const char __pyx_k_np[] = "np";
static const char __pyx_k_int[] = "int";
+static const char __pyx_k_max[] = "max";
+static const char __pyx_k_min[] = "min";
static const char __pyx_k_new[] = "__new__";
static const char __pyx_k_obj[] = "obj";
+static const char __pyx_k_val[] = "val";
static const char __pyx_k_args[] = "args";
static const char __pyx_k_base[] = "base";
static const char __pyx_k_dict[] = "__dict__";
@@ -1966,6 +2250,7 @@ static const char __pyx_k_error[] = "error";
static const char __pyx_k_flags[] = "flags";
static const char __pyx_k_float[] = "float";
static const char __pyx_k_index[] = "index";
+static const char __pyx_k_level[] = "level";
static const char __pyx_k_log10[] = "log10";
static const char __pyx_k_numpy[] = "numpy";
static const char __pyx_k_range[] = "range";
@@ -1975,6 +2260,8 @@ static const char __pyx_k_split[] = "split";
static const char __pyx_k_start[] = "start";
static const char __pyx_k_strip[] = "strip";
static const char __pyx_k_total[] = "total";
+static const char __pyx_k_zeros[] = "zeros";
+static const char __pyx_k_astype[] = "astype";
static const char __pyx_k_c_corr[] = "c_corr";
static const char __pyx_k_double[] = "double";
static const char __pyx_k_encode[] = "encode";
@@ -1988,28 +2275,38 @@ static const char __pyx_k_reduce[] = "__reduce__";
static const char __pyx_k_struct[] = "struct";
static const char __pyx_k_unpack[] = "unpack";
static const char __pyx_k_update[] = "update";
+static const char __pyx_k_float32[] = "float32";
static const char __pyx_k_fortran[] = "fortran";
static const char __pyx_k_int_int[] = "int|int";
static const char __pyx_k_memview[] = "memview";
+static const char __pyx_k_tmp_val[] = "tmp_val";
static const char __pyx_k_Ellipsis[] = "Ellipsis";
static const char __pyx_k_corr_val[] = "corr_val";
static const char __pyx_k_defaults[] = "defaults";
static const char __pyx_k_getstate[] = "__getstate__";
+static const char __pyx_k_ind_tdoa[] = "ind_tdoa";
static const char __pyx_k_int_long[] = "int|long";
static const char __pyx_k_itemsize[] = "itemsize";
static const char __pyx_k_long_int[] = "long|int";
+static const char __pyx_k_max_tdoa[] = "max_tdoa";
+static const char __pyx_k_out_taus[] = "out_taus";
static const char __pyx_k_pyx_type[] = "__pyx_type";
static const char __pyx_k_setstate[] = "__setstate__";
+static const char __pyx_k_win_size[] = "win_size";
static const char __pyx_k_TypeError[] = "TypeError";
+static const char __pyx_k_base_tdoa[] = "base_tdoa";
+static const char __pyx_k_c_corr_at[] = "c_corr_at";
+static const char __pyx_k_curr_tdoa[] = "curr_tdoa";
static const char __pyx_k_enumerate[] = "enumerate";
static const char __pyx_k_float_int[] = "float|int";
static const char __pyx_k_int_short[] = "int|short";
-static const char __pyx_k_long_long[] = "long long";
+static const char __pyx_k_long_long[] = "long|long";
static const char __pyx_k_pyx_state[] = "__pyx_state";
static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
static const char __pyx_k_short_int[] = "short|int";
static const char __pyx_k_IndexError[] = "IndexError";
static const char __pyx_k_ValueError[] = "ValueError";
+static const char __pyx_k_c_corr_all[] = "c_corr_all";
static const char __pyx_k_c_corr_pyx[] = "c_corr.pyx";
static const char __pyx_k_double_int[] = "double|int";
static const char __pyx_k_float_long[] = "float|long";
@@ -2022,31 +2319,25 @@ static const char __pyx_k_MemoryError[] = "MemoryError";
static const char __pyx_k_PickleError[] = "PickleError";
static const char __pyx_k_double_long[] = "double|long";
static const char __pyx_k_float_short[] = "float|short";
-static const char __pyx_k_long_long_2[] = "long|long";
static const char __pyx_k_short_short[] = "short|short";
+static const char __pyx_k_c_corr_core2[] = "_c_corr_core2";
static const char __pyx_k_double_short[] = "double|short";
static const char __pyx_k_max_corr_val[] = "max_corr_val";
static const char __pyx_k_pyx_checksum[] = "__pyx_checksum";
static const char __pyx_k_stringsource[] = "stringsource";
-static const char __pyx_k_int_long_long[] = "int|long long";
-static const char __pyx_k_long_long_int[] = "long long|int";
static const char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer";
static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
-static const char __pyx_k_long_long_long[] = "long|long long";
static const char __pyx_k_View_MemoryView[] = "View.MemoryView";
static const char __pyx_k_allocate_buffer[] = "allocate_buffer";
static const char __pyx_k_dtype_is_object[] = "dtype_is_object";
-static const char __pyx_k_float_long_long[] = "float|long long";
-static const char __pyx_k_long_long_short[] = "long long|short";
static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
-static const char __pyx_k_short_long_long[] = "short|long long";
-static const char __pyx_k_double_long_long[] = "double|long long";
-static const char __pyx_k_long_long_long_2[] = "long long|long";
static const char __pyx_k_pyx_unpickle_Enum[] = "__pyx_unpickle_Enum";
static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
static const char __pyx_k_strided_and_direct[] = "<strided and direct>";
-static const char __pyx_k_long_long_long_long[] = "long long|long long";
+static const char __pyx_k_pyx_fuse_0c_corr_all[] = "__pyx_fuse_0c_corr_all";
+static const char __pyx_k_pyx_fuse_1c_corr_all[] = "__pyx_fuse_1c_corr_all";
+static const char __pyx_k_pyx_fuse_2c_corr_all[] = "__pyx_fuse_2c_corr_all";
static const char __pyx_k_strided_and_indirect[] = "<strided and indirect>";
static const char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>";
static const char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>";
@@ -2103,10 +2394,15 @@ static PyObject *__pyx_n_s_View_MemoryView;
static PyObject *__pyx_kp_s__2;
static PyObject *__pyx_n_s_allocate_buffer;
static PyObject *__pyx_n_s_args;
+static PyObject *__pyx_n_s_astype;
static PyObject *__pyx_n_s_base;
+static PyObject *__pyx_n_s_base_tdoa;
static PyObject *__pyx_n_s_c;
static PyObject *__pyx_n_u_c;
static PyObject *__pyx_n_s_c_corr;
+static PyObject *__pyx_n_s_c_corr_all;
+static PyObject *__pyx_n_s_c_corr_at;
+static PyObject *__pyx_n_s_c_corr_core2;
static PyObject *__pyx_kp_s_c_corr_pyx;
static PyObject *__pyx_n_s_cc;
static PyObject *__pyx_n_s_class;
@@ -2114,12 +2410,12 @@ static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_kp_s_contiguous_and_direct;
static PyObject *__pyx_kp_s_contiguous_and_indirect;
static PyObject *__pyx_n_s_corr_val;
+static PyObject *__pyx_n_s_curr_tdoa;
static PyObject *__pyx_n_s_defaults;
static PyObject *__pyx_n_s_dict;
static PyObject *__pyx_n_s_double;
static PyObject *__pyx_kp_s_double_int;
static PyObject *__pyx_kp_s_double_long;
-static PyObject *__pyx_kp_s_double_long_long;
static PyObject *__pyx_kp_s_double_short;
static PyObject *__pyx_n_s_dtype;
static PyObject *__pyx_n_s_dtype_is_object;
@@ -2128,9 +2424,9 @@ static PyObject *__pyx_n_s_enumerate;
static PyObject *__pyx_n_s_error;
static PyObject *__pyx_n_s_flags;
static PyObject *__pyx_n_s_float;
+static PyObject *__pyx_n_s_float32;
static PyObject *__pyx_kp_s_float_int;
static PyObject *__pyx_kp_s_float_long;
-static PyObject *__pyx_kp_s_float_long_long;
static PyObject *__pyx_kp_s_float_short;
static PyObject *__pyx_n_s_format;
static PyObject *__pyx_n_s_fortran;
@@ -2138,32 +2434,32 @@ static PyObject *__pyx_n_u_fortran;
static PyObject *__pyx_n_s_getstate;
static PyObject *__pyx_kp_s_got_differing_extents_in_dimensi;
static PyObject *__pyx_n_s_i;
+static PyObject *__pyx_n_s_i0;
static PyObject *__pyx_n_s_id;
static PyObject *__pyx_n_s_import;
+static PyObject *__pyx_n_s_ind_tdoa;
static PyObject *__pyx_n_s_index;
static PyObject *__pyx_n_s_int;
static PyObject *__pyx_kp_s_int_int;
static PyObject *__pyx_kp_s_int_long;
-static PyObject *__pyx_kp_s_int_long_long;
static PyObject *__pyx_kp_s_int_short;
static PyObject *__pyx_n_s_itemsize;
static PyObject *__pyx_kp_s_itemsize_0_for_cython_array;
+static PyObject *__pyx_n_s_j0;
static PyObject *__pyx_n_s_kind;
static PyObject *__pyx_n_s_kwargs;
+static PyObject *__pyx_n_s_level;
static PyObject *__pyx_n_s_log10;
static PyObject *__pyx_n_s_long;
static PyObject *__pyx_kp_s_long_int;
static PyObject *__pyx_kp_s_long_long;
-static PyObject *__pyx_kp_s_long_long_2;
-static PyObject *__pyx_kp_s_long_long_int;
-static PyObject *__pyx_kp_s_long_long_long;
-static PyObject *__pyx_kp_s_long_long_long_2;
-static PyObject *__pyx_kp_s_long_long_long_long;
-static PyObject *__pyx_kp_s_long_long_short;
static PyObject *__pyx_kp_s_long_short;
static PyObject *__pyx_n_s_main;
+static PyObject *__pyx_n_s_max;
static PyObject *__pyx_n_s_max_corr_val;
+static PyObject *__pyx_n_s_max_tdoa;
static PyObject *__pyx_n_s_memview;
+static PyObject *__pyx_n_s_min;
static PyObject *__pyx_n_s_mode;
static PyObject *__pyx_n_s_n_pair;
static PyObject *__pyx_n_s_name;
@@ -2174,11 +2470,15 @@ static PyObject *__pyx_kp_s_no_default___reduce___due_to_non;
static PyObject *__pyx_n_s_np;
static PyObject *__pyx_n_s_numpy;
static PyObject *__pyx_n_s_obj;
+static PyObject *__pyx_n_s_out_taus;
static PyObject *__pyx_n_s_p;
static PyObject *__pyx_n_s_pack;
static PyObject *__pyx_n_s_pickle;
static PyObject *__pyx_n_s_pyx_PickleError;
static PyObject *__pyx_n_s_pyx_checksum;
+static PyObject *__pyx_n_s_pyx_fuse_0c_corr_all;
+static PyObject *__pyx_n_s_pyx_fuse_1c_corr_all;
+static PyObject *__pyx_n_s_pyx_fuse_2c_corr_all;
static PyObject *__pyx_n_s_pyx_getbuffer;
static PyObject *__pyx_n_s_pyx_result;
static PyObject *__pyx_n_s_pyx_state;
@@ -2196,7 +2496,6 @@ static PyObject *__pyx_n_s_shape;
static PyObject *__pyx_n_s_short;
static PyObject *__pyx_kp_s_short_int;
static PyObject *__pyx_kp_s_short_long;
-static PyObject *__pyx_kp_s_short_long_long;
static PyObject *__pyx_kp_s_short_short;
static PyObject *__pyx_n_s_signatures;
static PyObject *__pyx_n_s_size;
@@ -2212,36 +2511,51 @@ static PyObject *__pyx_n_s_strip;
static PyObject *__pyx_n_s_struct;
static PyObject *__pyx_n_s_taus;
static PyObject *__pyx_n_s_test;
+static PyObject *__pyx_n_s_tmp_val;
static PyObject *__pyx_n_s_total;
static PyObject *__pyx_kp_s_unable_to_allocate_array_data;
static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str;
static PyObject *__pyx_n_s_unpack;
static PyObject *__pyx_n_s_update;
-static PyObject *__pyx_pf_6c_corr_c_corr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_signatures, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs, CYTHON_UNUSED PyObject *__pyx_v_defaults); /* proto */
-static PyObject *__pyx_pf_6c_corr_2c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_4c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_6c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_8c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_10c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_12c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_14c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_16c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_18c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_20c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_22c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_24c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_26c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_28c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_30c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_32c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_34c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_36c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_38c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_40c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_42c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_44c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_46c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
-static PyObject *__pyx_pf_6c_corr_48c_corr(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_n_s_val;
+static PyObject *__pyx_n_s_win_size;
+static PyObject *__pyx_n_s_zeros;
+static PyObject *__pyx_pf_6c_corr_c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_signatures, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs, CYTHON_UNUSED PyObject *__pyx_v_defaults); /* proto */
+static PyObject *__pyx_pf_6c_corr_6c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_8c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_10c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_12c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_14c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_16c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_18c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_20c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_22c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_24c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_26c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_28c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_30c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_32c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_34c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus); /* proto */
+static PyObject *__pyx_pf_6c_corr_2c_corr_all(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_signatures, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs, CYTHON_UNUSED PyObject *__pyx_v_defaults); /* proto */
+static PyObject *__pyx_pf_6c_corr_38__pyx_fuse_0c_corr_all(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_cc, short __pyx_v_max_tdoa, short __pyx_v_base_tdoa); /* proto */
+static PyObject *__pyx_pf_6c_corr_40__pyx_fuse_1c_corr_all(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_cc, int __pyx_v_max_tdoa, int __pyx_v_base_tdoa); /* proto */
+static PyObject *__pyx_pf_6c_corr_42__pyx_fuse_2c_corr_all(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_cc, long __pyx_v_max_tdoa, long __pyx_v_base_tdoa); /* proto */
+static PyObject *__pyx_pf_6c_corr_4_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_signatures, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs, CYTHON_UNUSED PyObject *__pyx_v_defaults); /* proto */
+static PyObject *__pyx_pf_6c_corr_46_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED short __pyx_v_curr_tdoa, short __pyx_v_ind_tdoa, short __pyx_v_max_tdoa, short __pyx_v_win_size, short __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_48_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED int __pyx_v_curr_tdoa, int __pyx_v_ind_tdoa, int __pyx_v_max_tdoa, int __pyx_v_win_size, int __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_50_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED long __pyx_v_curr_tdoa, long __pyx_v_ind_tdoa, long __pyx_v_max_tdoa, long __pyx_v_win_size, long __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_52_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED short __pyx_v_curr_tdoa, short __pyx_v_ind_tdoa, short __pyx_v_max_tdoa, short __pyx_v_win_size, short __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_54_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED int __pyx_v_curr_tdoa, int __pyx_v_ind_tdoa, int __pyx_v_max_tdoa, int __pyx_v_win_size, int __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_56_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED long __pyx_v_curr_tdoa, long __pyx_v_ind_tdoa, long __pyx_v_max_tdoa, long __pyx_v_win_size, long __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_58_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED short __pyx_v_curr_tdoa, short __pyx_v_ind_tdoa, short __pyx_v_max_tdoa, short __pyx_v_win_size, short __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_60_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED int __pyx_v_curr_tdoa, int __pyx_v_ind_tdoa, int __pyx_v_max_tdoa, int __pyx_v_win_size, int __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_62_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED long __pyx_v_curr_tdoa, long __pyx_v_ind_tdoa, long __pyx_v_max_tdoa, long __pyx_v_win_size, long __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_64_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED short __pyx_v_curr_tdoa, short __pyx_v_ind_tdoa, short __pyx_v_max_tdoa, short __pyx_v_win_size, short __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_66_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED int __pyx_v_curr_tdoa, int __pyx_v_ind_tdoa, int __pyx_v_max_tdoa, int __pyx_v_win_size, int __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_68_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED long __pyx_v_curr_tdoa, long __pyx_v_ind_tdoa, long __pyx_v_max_tdoa, long __pyx_v_win_size, long __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_70_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED short __pyx_v_curr_tdoa, short __pyx_v_ind_tdoa, short __pyx_v_max_tdoa, short __pyx_v_win_size, short __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_72_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED int __pyx_v_curr_tdoa, int __pyx_v_ind_tdoa, int __pyx_v_max_tdoa, int __pyx_v_win_size, int __pyx_v_n_pair); /* proto */
+static PyObject *__pyx_pf_6c_corr_74_c_corr_core2(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus, __Pyx_memviewslice __pyx_v_out_taus, double __pyx_v_val, CYTHON_UNUSED long __pyx_v_curr_tdoa, long __pyx_v_ind_tdoa, long __pyx_v_max_tdoa, long __pyx_v_win_size, long __pyx_v_n_pair); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */
@@ -2291,6 +2605,8 @@ static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyO
static PyObject *__pyx_int_0;
static PyObject *__pyx_int_1;
static PyObject *__pyx_int_2;
+static PyObject *__pyx_int_3;
+static PyObject *__pyx_int_9;
static PyObject *__pyx_int_184977713;
static PyObject *__pyx_int_neg_1;
static PyObject *__pyx_tuple__3;
@@ -2315,31 +2631,39 @@ static PyObject *__pyx_tuple__21;
static PyObject *__pyx_tuple__22;
static PyObject *__pyx_tuple__23;
static PyObject *__pyx_tuple__25;
-static PyObject *__pyx_tuple__26;
static PyObject *__pyx_tuple__27;
-static PyObject *__pyx_tuple__28;
static PyObject *__pyx_tuple__29;
static PyObject *__pyx_tuple__30;
+static PyObject *__pyx_tuple__31;
+static PyObject *__pyx_tuple__32;
+static PyObject *__pyx_tuple__33;
+static PyObject *__pyx_tuple__34;
static PyObject *__pyx_codeobj__24;
-static PyObject *__pyx_codeobj__31;
+static PyObject *__pyx_codeobj__26;
+static PyObject *__pyx_codeobj__28;
+static PyObject *__pyx_codeobj__35;
/* Late includes */
-/* "c_corr.pyx":23
- * @cython.boundscheck(False)
+/* "c_corr.pyx":22
* @cython.wraparound(False)
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
+ * @cython.embedsignature(True)
+ * def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
* total = taus.shape[1]
* n_pair = taus.shape[0]
*/
/* Python wrapper */
-static PyObject *__pyx_pw_6c_corr_1c_corr(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
-static PyMethodDef __pyx_mdef_6c_corr_1c_corr = {"c_corr", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_6c_corr_1c_corr, METH_VARARGS|METH_KEYWORDS, 0};
-static PyObject *__pyx_pw_6c_corr_1c_corr(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
+static PyObject *__pyx_pw_6c_corr_1c_corr_at(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
+static char __pyx_doc_6c_corr_c_corr_at[] = "c_corr_at(signatures, args, kwargs, defaults)";
+static PyMethodDef __pyx_mdef_6c_corr_1c_corr_at = {"c_corr_at", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_6c_corr_1c_corr_at, METH_VARARGS|METH_KEYWORDS, __pyx_doc_6c_corr_c_corr_at};
+static PyObject *__pyx_pw_6c_corr_1c_corr_at(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
PyObject *__pyx_v_signatures = 0;
PyObject *__pyx_v_args = 0;
PyObject *__pyx_v_kwargs = 0;
CYTHON_UNUSED PyObject *__pyx_v_defaults = 0;
+ int __pyx_lineno = 0;
+ const char *__pyx_filename = NULL;
+ int __pyx_clineno = 0;
PyObject *__pyx_r = 0;
__Pyx_RefNannyDeclarations
__Pyx_RefNannySetupContext("__pyx_fused_cpdef (wrapper)", 0);
@@ -2370,23 +2694,23 @@ static PyObject *__pyx_pw_6c_corr_1c_corr(PyObject *__pyx_self, PyObject *__pyx_
case 1:
if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_args)) != 0)) kw_args--;
else {
- __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, 1); __PYX_ERR(0, 23, __pyx_L3_error)
+ __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, 1); __PYX_ERR(0, 22, __pyx_L3_error)
}
CYTHON_FALLTHROUGH;
case 2:
if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_kwargs)) != 0)) kw_args--;
else {
- __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, 2); __PYX_ERR(0, 23, __pyx_L3_error)
+ __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, 2); __PYX_ERR(0, 22, __pyx_L3_error)
}
CYTHON_FALLTHROUGH;
case 3:
if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_defaults)) != 0)) kw_args--;
else {
- __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, 3); __PYX_ERR(0, 23, __pyx_L3_error)
+ __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, 3); __PYX_ERR(0, 22, __pyx_L3_error)
}
}
if (unlikely(kw_args > 0)) {
- if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_fused_cpdef") < 0)) __PYX_ERR(0, 23, __pyx_L3_error)
+ if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_fused_cpdef") < 0)) __PYX_ERR(0, 22, __pyx_L3_error)
}
} else if (PyTuple_GET_SIZE(__pyx_args) != 4) {
goto __pyx_L5_argtuple_error;
@@ -2403,20 +2727,20 @@ static PyObject *__pyx_pw_6c_corr_1c_corr(PyObject *__pyx_self, PyObject *__pyx_
}
goto __pyx_L4_argument_unpacking_done;
__pyx_L5_argtuple_error:;
- __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 23, __pyx_L3_error)
+ __Pyx_RaiseArgtupleInvalid("__pyx_fused_cpdef", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 22, __pyx_L3_error)
__pyx_L3_error:;
__Pyx_AddTraceback("c_corr.__pyx_fused_cpdef", __pyx_clineno, __pyx_lineno, __pyx_filename);
__Pyx_RefNannyFinishContext();
return NULL;
__pyx_L4_argument_unpacking_done:;
- __pyx_r = __pyx_pf_6c_corr_c_corr(__pyx_self, __pyx_v_signatures, __pyx_v_args, __pyx_v_kwargs, __pyx_v_defaults);
+ __pyx_r = __pyx_pf_6c_corr_c_corr_at(__pyx_self, __pyx_v_signatures, __pyx_v_args, __pyx_v_kwargs, __pyx_v_defaults);
/* function exit code */
__Pyx_RefNannyFinishContext();
return __pyx_r;
}
-static PyObject *__pyx_pf_6c_corr_c_corr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_signatures, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs, CYTHON_UNUSED PyObject *__pyx_v_defaults) {
+static PyObject *__pyx_pf_6c_corr_c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_signatures, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs, CYTHON_UNUSED PyObject *__pyx_v_defaults) {
PyObject *__pyx_v_dest_sig = NULL;
Py_ssize_t __pyx_v_i;
PyTypeObject *__pyx_v_ndarray = 0;
@@ -2427,7 +2751,6 @@ static PyObject *__pyx_pf_6c_corr_c_corr(CYTHON_UNUSED PyObject *__pyx_self, PyO
int __pyx_v_short_is_signed;
int __pyx_v_int_is_signed;
int __pyx_v_long_is_signed;
- int __pyx_v_long_long_is_signed;
PyObject *__pyx_v_arg = NULL;
PyObject *__pyx_v_dtype = NULL;
PyObject *__pyx_v_arg_base = NULL;
@@ -2456,9 +2779,12 @@ static PyObject *__pyx_pf_6c_corr_c_corr(CYTHON_UNUSED PyObject *__pyx_self, PyO
Py_ssize_t __pyx_t_16;
Py_ssize_t __pyx_t_17;
int __pyx_t_18;
- __Pyx_RefNannySetupContext("c_corr", 0);
+ int __pyx_lineno = 0;
+ const char *__pyx_filename = NULL;
+ int __pyx_clineno = 0;
+ __Pyx_RefNannySetupContext("c_corr_at", 0);
__Pyx_INCREF(__pyx_v_kwargs);
- __pyx_t_1 = PyList_New(1 * 2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 23, __pyx_L1_error)
+ __pyx_t_1 = PyList_New(1 * 2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 22, __pyx_L1_error)
__Pyx_GOTREF(__pyx_t_1);
{ Py_ssize_t __pyx_temp;
for (__pyx_temp=0; __pyx_temp < 2; __pyx_temp++) {
@@ -2476,7 +2802,7 @@ static PyObject *__pyx_pf_6c_corr_c_corr(CYTHON_UNUSED PyObject *__pyx_self, PyO
__pyx_t_2 = __pyx_t_4;
goto __pyx_L4_bool_binop_done;
}
- __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_v_kwargs); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 23, __pyx_L1_error)
+ __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_v_kwargs); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 22, __pyx_L1_error)
__pyx_t_3 = ((!__pyx_t_4) != 0);
__pyx_t_2 = __pyx_t_3;
__pyx_L4_bool_binop_done:;
@@ -2484,7 +2810,7 @@ static PyObject *__pyx_pf_6c_corr_c_corr(CYTHON_UNUSED PyObject *__pyx_self, PyO
__Pyx_INCREF(Py_None);
__Pyx_DECREF_SET(__pyx_v_kwargs, Py_None);
}
- __pyx_t_1 = ((PyObject *)__Pyx_ImportNumPyArrayTypeIfAvailable()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 23, __pyx_L1_error)
+ __pyx_t_1 = ((PyObject *)__Pyx_ImportNumPyArrayTypeIfAvailable()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 22, __pyx_L1_error)
__Pyx_GOTREF(__pyx_t_1);
__pyx_v_ndarray = ((PyTypeObject*)__pyx_t_1);
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__pyx_v_n_pair = (__pyx_v_taus.shape[0]);
- /* "c_corr.pyx":26
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* total = taus.shape[1]
* n_pair = taus.shape[0]
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*/
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- /* "c_corr.pyx":27
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* n_pair = taus.shape[0]
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* cdef int index = 0 # <<<<<<<<<<<<<<
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*/
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+ /* "c_corr.pyx":27
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*/
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* cdef double corr_val = 0.0
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__pyx_v_i = __pyx_t_3;
- /* "c_corr.pyx":30
+ /* "c_corr.pyx":29
* cdef double corr_val = 0.0
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*/
__pyx_v_corr_val = 1.0;
- /* "c_corr.pyx":31
+ /* "c_corr.pyx":30
* for i in range(total):
* corr_val = 1.0
* for p in range(n_pair): # <<<<<<<<<<<<<<
@@ -4112,7 +4371,7 @@ static PyObject *__pyx_pf_6c_corr_6c_corr(CYTHON_UNUSED PyObject *__pyx_self, __
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__pyx_v_p = __pyx_t_6;
- /* "c_corr.pyx":32
+ /* "c_corr.pyx":31
* corr_val = 1.0
* for p in range(n_pair):
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}
- /* "c_corr.pyx":33
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* for p in range(n_pair):
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if (__pyx_t_11) {
- /* "c_corr.pyx":34
+ /* "c_corr.pyx":33
* corr_val *= cc[p, taus[p, i]]
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__pyx_v_max_corr_val = __pyx_v_corr_val;
- /* "c_corr.pyx":35
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* if corr_val > max_corr_val:
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* index = i # <<<<<<<<<<<<<<
* return np.log10(max_corr_val), index
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*/
__pyx_v_index = __pyx_v_i;
- /* "c_corr.pyx":33
+ /* "c_corr.pyx":32
* for p in range(n_pair):
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}
}
- /* "c_corr.pyx":36
+ /* "c_corr.pyx":35
* max_corr_val = corr_val
* index = i
* return np.log10(max_corr_val), index # <<<<<<<<<<<<<<
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__Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
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__Pyx_XDECREF(__pyx_t_15); __pyx_t_15 = 0;
__Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
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PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_t_12);
@@ -4206,10 +4468,10 @@ static PyObject *__pyx_pf_6c_corr_6c_corr(CYTHON_UNUSED PyObject *__pyx_self, __
__pyx_t_13 = 0;
goto __pyx_L0;
- /* "c_corr.pyx":23
- * @cython.boundscheck(False)
+ /* "c_corr.pyx":22
* @cython.wraparound(False)
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
+ * @cython.embedsignature(True)
+ * def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
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* n_pair = taus.shape[0]
*/
@@ -4220,7 +4482,7 @@ static PyObject *__pyx_pf_6c_corr_6c_corr(CYTHON_UNUSED PyObject *__pyx_self, __
__Pyx_XDECREF(__pyx_t_13);
__Pyx_XDECREF(__pyx_t_14);
__Pyx_XDECREF(__pyx_t_15);
- __Pyx_AddTraceback("c_corr.c_corr", __pyx_clineno, __pyx_lineno, __pyx_filename);
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__pyx_r = NULL;
__pyx_L0:;
__PYX_XDEC_MEMVIEW(&__pyx_v_cc, 1);
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}
/* Python wrapper */
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-static PyObject *__pyx_fuse_0_3__pyx_pw_6c_corr_9c_corr(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
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+static PyObject *__pyx_fuse_1_0__pyx_pw_6c_corr_13c_corr_at(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
__Pyx_memviewslice __pyx_v_cc = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_memviewslice __pyx_v_taus = { 0, 0, { 0 }, { 0 }, { 0 } };
+ int __pyx_lineno = 0;
+ const char *__pyx_filename = NULL;
+ int __pyx_clineno = 0;
PyObject *__pyx_r = 0;
__Pyx_RefNannyDeclarations
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values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
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__pyx_L3_error:;
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+static PyObject *__pyx_pf_6c_corr_12c_corr_at(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_cc, __Pyx_memviewslice __pyx_v_taus) {
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Py_ssize_t __pyx_v_n_pair;
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Py_ssize_t __pyx_t_7;
Py_ssize_t __pyx_t_8;
Py_ssize_t __pyx_t_9;
- PY_LONG_LONG __pyx_t_10;
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int __pyx_t_11;
PyObject *__pyx_t_12 = NULL;
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PyObject *__pyx_t_14 = NULL;
PyObject *__pyx_t_15 = NULL;
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- /* "c_corr.pyx":24
- * @cython.wraparound(False)
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+ /* "c_corr.pyx":23
+ * @cython.embedsignature(True)
+ * def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus):
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* n_pair = taus.shape[0]
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- /* "c_corr.pyx":25
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus):
+ /* "c_corr.pyx":24
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__pyx_v_n_pair = (__pyx_v_taus.shape[0]);
- /* "c_corr.pyx":26
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__pyx_v_max_corr_val = 0.0;
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* n_pair = taus.shape[0]
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__pyx_v_index = 0;
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__pyx_v_corr_val = 0.0;
- /* "c_corr.pyx":29
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__pyx_v_i = __pyx_t_3;
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__pyx_v_corr_val = 1.0;
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}
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__pyx_v_max_corr_val = __pyx_v_corr_val;
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/* Python wrapper */
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Py_ssize_t __pyx_v_total;
Py_ssize_t __pyx_v_n_pair;
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+ /* "c_corr.pyx":23
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- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus):
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*/
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__pyx_v_p = __pyx_t_6;
- /* "c_corr.pyx":32
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- /* "c_corr.pyx":34
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* corr_val *= cc[p, taus[p, i]]
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* index = i # <<<<<<<<<<<<<<
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*/
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- /* "c_corr.pyx":33
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* for p in range(n_pair):
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}
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- /* "c_corr.pyx":36
+ /* "c_corr.pyx":35
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* index = i
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__Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
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@@ -5631,10 +5938,10 @@ static PyObject *__pyx_pf_6c_corr_16c_corr(CYTHON_UNUSED PyObject *__pyx_self, _
__pyx_t_13 = 0;
goto __pyx_L0;
- /* "c_corr.pyx":23
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+ /* "c_corr.pyx":22
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- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
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__Pyx_XDECREF(__pyx_t_13);
__Pyx_XDECREF(__pyx_t_14);
__Pyx_XDECREF(__pyx_t_15);
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}
/* Python wrapper */
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__Pyx_memviewslice __pyx_v_cc = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_memviewslice __pyx_v_taus = { 0, 0, { 0 }, { 0 }, { 0 } };
+ int __pyx_lineno = 0;
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PyObject *__pyx_r = 0;
__Pyx_RefNannyDeclarations
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PyObject *__pyx_t_14 = NULL;
PyObject *__pyx_t_15 = NULL;
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+ /* "c_corr.pyx":23
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- /* "c_corr.pyx":25
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus):
+ /* "c_corr.pyx":24
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*/
__pyx_v_max_corr_val = 0.0;
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* n_pair = taus.shape[0]
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__pyx_v_index = 0;
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__pyx_v_corr_val = 0.0;
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__pyx_v_i = __pyx_t_3;
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__pyx_v_corr_val = 1.0;
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if (__pyx_t_11) {
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+static PyObject *__pyx_fuse_3_1__pyx_pw_6c_corr_27c_corr_at(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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__Pyx_memviewslice __pyx_v_cc = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_memviewslice __pyx_v_taus = { 0, 0, { 0 }, { 0 }, { 0 } };
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Py_ssize_t __pyx_v_total;
Py_ssize_t __pyx_v_n_pair;
double __pyx_v_max_corr_val;
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PyObject *__pyx_t_14 = NULL;
PyObject *__pyx_t_15 = NULL;
- __Pyx_RefNannySetupContext("__pyx_fuse_2_2c_corr", 0);
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- * @cython.wraparound(False)
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+ /* "c_corr.pyx":23
+ * @cython.embedsignature(True)
+ * def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus):
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- /* "c_corr.pyx":25
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus):
+ /* "c_corr.pyx":24
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*/
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*/
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Py_ssize_t __pyx_t_8;
Py_ssize_t __pyx_t_9;
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*/
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goto __pyx_L0;
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__Pyx_XDECREF(__pyx_t_15);
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__Pyx_memviewslice __pyx_v_taus = { 0, 0, { 0 }, { 0 }, { 0 } };
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PyObject *__pyx_t_15 = NULL;
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__pyx_v_i = __pyx_t_3;
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Py_ssize_t *__pyx_t_5;
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PyObject *__pyx_t_2 = NULL;
PyObject *__pyx_t_3 = NULL;
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int __pyx_t_9;
int __pyx_t_10;
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int __pyx_t_4;
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int __pyx_t_11;
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int __pyx_t_2;
int __pyx_t_3;
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PyObject *__pyx_t_3 = NULL;
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int __pyx_t_7;
int __pyx_t_8;
int __pyx_t_9;
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int __pyx_t_1;
int __pyx_t_2;
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int __pyx_t_1;
int __pyx_t_2;
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int (*__pyx_t_4)(char *, PyObject *);
PyObject *__pyx_t_5 = NULL;
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int __pyx_t_5;
int __pyx_t_6;
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PyObject *__pyx_t_2 = NULL;
PyObject *__pyx_t_3 = NULL;
PyObject *__pyx_t_4 = NULL;
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PyObject *__pyx_t_2 = NULL;
PyObject *__pyx_t_3 = NULL;
PyObject *__pyx_t_4 = NULL;
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PyObject *__pyx_t_3 = NULL;
PyObject *__pyx_t_4 = NULL;
PyObject *__pyx_t_5 = NULL;
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void *__pyx_t_7;
int __pyx_t_8;
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PyObject *__pyx_v___pyx_state = 0;
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PyObject *etype, *eval, *etb;
PyErr_Fetch(&etype, &eval, &etb);
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PyObject *etype, *eval, *etb;
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{&__pyx_n_s_float, __pyx_k_float, sizeof(__pyx_k_float), 0, 0, 1, 1},
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{&__pyx_kp_s_float_int, __pyx_k_float_int, sizeof(__pyx_k_float_int), 0, 0, 1, 0},
{&__pyx_kp_s_float_long, __pyx_k_float_long, sizeof(__pyx_k_float_long), 0, 0, 1, 0},
- {&__pyx_kp_s_float_long_long, __pyx_k_float_long_long, sizeof(__pyx_k_float_long_long), 0, 0, 1, 0},
{&__pyx_kp_s_float_short, __pyx_k_float_short, sizeof(__pyx_k_float_short), 0, 0, 1, 0},
{&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1},
{&__pyx_n_s_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 0, 1, 1},
@@ -23864,32 +33944,32 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1},
{&__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_k_got_differing_extents_in_dimensi, sizeof(__pyx_k_got_differing_extents_in_dimensi), 0, 0, 1, 0},
{&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1},
+ {&__pyx_n_s_i0, __pyx_k_i0, sizeof(__pyx_k_i0), 0, 0, 1, 1},
{&__pyx_n_s_id, __pyx_k_id, sizeof(__pyx_k_id), 0, 0, 1, 1},
{&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
+ {&__pyx_n_s_ind_tdoa, __pyx_k_ind_tdoa, sizeof(__pyx_k_ind_tdoa), 0, 0, 1, 1},
{&__pyx_n_s_index, __pyx_k_index, sizeof(__pyx_k_index), 0, 0, 1, 1},
{&__pyx_n_s_int, __pyx_k_int, sizeof(__pyx_k_int), 0, 0, 1, 1},
{&__pyx_kp_s_int_int, __pyx_k_int_int, sizeof(__pyx_k_int_int), 0, 0, 1, 0},
{&__pyx_kp_s_int_long, __pyx_k_int_long, sizeof(__pyx_k_int_long), 0, 0, 1, 0},
- {&__pyx_kp_s_int_long_long, __pyx_k_int_long_long, sizeof(__pyx_k_int_long_long), 0, 0, 1, 0},
{&__pyx_kp_s_int_short, __pyx_k_int_short, sizeof(__pyx_k_int_short), 0, 0, 1, 0},
{&__pyx_n_s_itemsize, __pyx_k_itemsize, sizeof(__pyx_k_itemsize), 0, 0, 1, 1},
{&__pyx_kp_s_itemsize_0_for_cython_array, __pyx_k_itemsize_0_for_cython_array, sizeof(__pyx_k_itemsize_0_for_cython_array), 0, 0, 1, 0},
+ {&__pyx_n_s_j0, __pyx_k_j0, sizeof(__pyx_k_j0), 0, 0, 1, 1},
{&__pyx_n_s_kind, __pyx_k_kind, sizeof(__pyx_k_kind), 0, 0, 1, 1},
{&__pyx_n_s_kwargs, __pyx_k_kwargs, sizeof(__pyx_k_kwargs), 0, 0, 1, 1},
+ {&__pyx_n_s_level, __pyx_k_level, sizeof(__pyx_k_level), 0, 0, 1, 1},
{&__pyx_n_s_log10, __pyx_k_log10, sizeof(__pyx_k_log10), 0, 0, 1, 1},
{&__pyx_n_s_long, __pyx_k_long, sizeof(__pyx_k_long), 0, 0, 1, 1},
{&__pyx_kp_s_long_int, __pyx_k_long_int, sizeof(__pyx_k_long_int), 0, 0, 1, 0},
{&__pyx_kp_s_long_long, __pyx_k_long_long, sizeof(__pyx_k_long_long), 0, 0, 1, 0},
- {&__pyx_kp_s_long_long_2, __pyx_k_long_long_2, sizeof(__pyx_k_long_long_2), 0, 0, 1, 0},
- {&__pyx_kp_s_long_long_int, __pyx_k_long_long_int, sizeof(__pyx_k_long_long_int), 0, 0, 1, 0},
- {&__pyx_kp_s_long_long_long, __pyx_k_long_long_long, sizeof(__pyx_k_long_long_long), 0, 0, 1, 0},
- {&__pyx_kp_s_long_long_long_2, __pyx_k_long_long_long_2, sizeof(__pyx_k_long_long_long_2), 0, 0, 1, 0},
- {&__pyx_kp_s_long_long_long_long, __pyx_k_long_long_long_long, sizeof(__pyx_k_long_long_long_long), 0, 0, 1, 0},
- {&__pyx_kp_s_long_long_short, __pyx_k_long_long_short, sizeof(__pyx_k_long_long_short), 0, 0, 1, 0},
{&__pyx_kp_s_long_short, __pyx_k_long_short, sizeof(__pyx_k_long_short), 0, 0, 1, 0},
{&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
+ {&__pyx_n_s_max, __pyx_k_max, sizeof(__pyx_k_max), 0, 0, 1, 1},
{&__pyx_n_s_max_corr_val, __pyx_k_max_corr_val, sizeof(__pyx_k_max_corr_val), 0, 0, 1, 1},
+ {&__pyx_n_s_max_tdoa, __pyx_k_max_tdoa, sizeof(__pyx_k_max_tdoa), 0, 0, 1, 1},
{&__pyx_n_s_memview, __pyx_k_memview, sizeof(__pyx_k_memview), 0, 0, 1, 1},
+ {&__pyx_n_s_min, __pyx_k_min, sizeof(__pyx_k_min), 0, 0, 1, 1},
{&__pyx_n_s_mode, __pyx_k_mode, sizeof(__pyx_k_mode), 0, 0, 1, 1},
{&__pyx_n_s_n_pair, __pyx_k_n_pair, sizeof(__pyx_k_n_pair), 0, 0, 1, 1},
{&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
@@ -23900,11 +33980,15 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1},
{&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
{&__pyx_n_s_obj, __pyx_k_obj, sizeof(__pyx_k_obj), 0, 0, 1, 1},
+ {&__pyx_n_s_out_taus, __pyx_k_out_taus, sizeof(__pyx_k_out_taus), 0, 0, 1, 1},
{&__pyx_n_s_p, __pyx_k_p, sizeof(__pyx_k_p), 0, 0, 1, 1},
{&__pyx_n_s_pack, __pyx_k_pack, sizeof(__pyx_k_pack), 0, 0, 1, 1},
{&__pyx_n_s_pickle, __pyx_k_pickle, sizeof(__pyx_k_pickle), 0, 0, 1, 1},
{&__pyx_n_s_pyx_PickleError, __pyx_k_pyx_PickleError, sizeof(__pyx_k_pyx_PickleError), 0, 0, 1, 1},
{&__pyx_n_s_pyx_checksum, __pyx_k_pyx_checksum, sizeof(__pyx_k_pyx_checksum), 0, 0, 1, 1},
+ {&__pyx_n_s_pyx_fuse_0c_corr_all, __pyx_k_pyx_fuse_0c_corr_all, sizeof(__pyx_k_pyx_fuse_0c_corr_all), 0, 0, 1, 1},
+ {&__pyx_n_s_pyx_fuse_1c_corr_all, __pyx_k_pyx_fuse_1c_corr_all, sizeof(__pyx_k_pyx_fuse_1c_corr_all), 0, 0, 1, 1},
+ {&__pyx_n_s_pyx_fuse_2c_corr_all, __pyx_k_pyx_fuse_2c_corr_all, sizeof(__pyx_k_pyx_fuse_2c_corr_all), 0, 0, 1, 1},
{&__pyx_n_s_pyx_getbuffer, __pyx_k_pyx_getbuffer, sizeof(__pyx_k_pyx_getbuffer), 0, 0, 1, 1},
{&__pyx_n_s_pyx_result, __pyx_k_pyx_result, sizeof(__pyx_k_pyx_result), 0, 0, 1, 1},
{&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1},
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{&__pyx_n_s_short, __pyx_k_short, sizeof(__pyx_k_short), 0, 0, 1, 1},
{&__pyx_kp_s_short_int, __pyx_k_short_int, sizeof(__pyx_k_short_int), 0, 0, 1, 0},
{&__pyx_kp_s_short_long, __pyx_k_short_long, sizeof(__pyx_k_short_long), 0, 0, 1, 0},
- {&__pyx_kp_s_short_long_long, __pyx_k_short_long_long, sizeof(__pyx_k_short_long_long), 0, 0, 1, 0},
{&__pyx_kp_s_short_short, __pyx_k_short_short, sizeof(__pyx_k_short_short), 0, 0, 1, 0},
{&__pyx_n_s_signatures, __pyx_k_signatures, sizeof(__pyx_k_signatures), 0, 0, 1, 1},
{&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1},
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{&__pyx_n_s_struct, __pyx_k_struct, sizeof(__pyx_k_struct), 0, 0, 1, 1},
{&__pyx_n_s_taus, __pyx_k_taus, sizeof(__pyx_k_taus), 0, 0, 1, 1},
{&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
+ {&__pyx_n_s_tmp_val, __pyx_k_tmp_val, sizeof(__pyx_k_tmp_val), 0, 0, 1, 1},
{&__pyx_n_s_total, __pyx_k_total, sizeof(__pyx_k_total), 0, 0, 1, 1},
{&__pyx_kp_s_unable_to_allocate_array_data, __pyx_k_unable_to_allocate_array_data, sizeof(__pyx_k_unable_to_allocate_array_data), 0, 0, 1, 0},
{&__pyx_kp_s_unable_to_allocate_shape_and_str, __pyx_k_unable_to_allocate_shape_and_str, sizeof(__pyx_k_unable_to_allocate_shape_and_str), 0, 0, 1, 0},
{&__pyx_n_s_unpack, __pyx_k_unpack, sizeof(__pyx_k_unpack), 0, 0, 1, 1},
{&__pyx_n_s_update, __pyx_k_update, sizeof(__pyx_k_update), 0, 0, 1, 1},
+ {&__pyx_n_s_val, __pyx_k_val, sizeof(__pyx_k_val), 0, 0, 1, 1},
+ {&__pyx_n_s_win_size, __pyx_k_win_size, sizeof(__pyx_k_win_size), 0, 0, 1, 1},
+ {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1},
{0, 0, 0, 0, 0, 0, 0}
};
static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) {
- __pyx_builtin_TypeError = __Pyx_GetBuiltinName(__pyx_n_s_TypeError); if (!__pyx_builtin_TypeError) __PYX_ERR(0, 23, __pyx_L1_error)
- __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 23, __pyx_L1_error)
+ __pyx_builtin_TypeError = __Pyx_GetBuiltinName(__pyx_n_s_TypeError); if (!__pyx_builtin_TypeError) __PYX_ERR(0, 22, __pyx_L1_error)
+ __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 22, __pyx_L1_error)
+ __pyx_builtin_min = __Pyx_GetBuiltinName(__pyx_n_s_min); if (!__pyx_builtin_min) __PYX_ERR(0, 106, __pyx_L1_error)
+ __pyx_builtin_max = __Pyx_GetBuiltinName(__pyx_n_s_max); if (!__pyx_builtin_max) __PYX_ERR(0, 107, __pyx_L1_error)
__pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(1, 133, __pyx_L1_error)
__pyx_builtin_MemoryError = __Pyx_GetBuiltinName(__pyx_n_s_MemoryError); if (!__pyx_builtin_MemoryError) __PYX_ERR(1, 148, __pyx_L1_error)
__pyx_builtin_enumerate = __Pyx_GetBuiltinName(__pyx_n_s_enumerate); if (!__pyx_builtin_enumerate) __PYX_ERR(1, 151, __pyx_L1_error)
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__Pyx_RefNannyDeclarations
__Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
- /* "c_corr.pyx":23
- * @cython.boundscheck(False)
+ /* "c_corr.pyx":22
* @cython.wraparound(False)
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
+ * @cython.embedsignature(True)
+ * def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
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* n_pair = taus.shape[0]
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+ __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_s_No_matching_signature_found); if (unlikely(!__pyx_tuple__3)) __PYX_ERR(0, 22, __pyx_L1_error)
__Pyx_GOTREF(__pyx_tuple__3);
__Pyx_GIVEREF(__pyx_tuple__3);
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__Pyx_GOTREF(__pyx_tuple__4);
__Pyx_GIVEREF(__pyx_tuple__4);
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__Pyx_GOTREF(__pyx_tuple__22);
__Pyx_GIVEREF(__pyx_tuple__22);
- /* "c_corr.pyx":23
- * @cython.boundscheck(False)
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* @cython.wraparound(False)
- * def c_corr(npType1[:,::1] cc, npType2[::1, :] taus): # <<<<<<<<<<<<<<
+ * @cython.embedsignature(True)
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__Pyx_GOTREF(__pyx_tuple__23);
__Pyx_GIVEREF(__pyx_tuple__23);
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+ /* "c_corr.pyx":41
+ * @cython.wraparound(False)
+ * @cython.embedsignature(True)
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+ * cdef double corr_val = 0.0
+ */
+ __pyx_tuple__25 = PyTuple_Pack(3, __pyx_n_s_cc, __pyx_n_s_max_tdoa, __pyx_n_s_base_tdoa); if (unlikely(!__pyx_tuple__25)) __PYX_ERR(0, 41, __pyx_L1_error)
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+ /* "c_corr.pyx":96
+ * @cython.wraparound(False)
+ * @cython.profile(True)
+ * def _c_corr_core2(npType1[:,::1] cc, npType2[::1] taus, npType2[::1] out_taus, double val, # <<<<<<<<<<<<<<
+ * npType2 curr_tdoa, npType2 ind_tdoa, npType2 max_tdoa, npType2 win_size, npType2 n_pair):
+ * cdef int i0 = 1
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/* "View.MemoryView":286
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- __pyx_tuple__25 = PyTuple_Pack(1, __pyx_kp_s_strided_and_direct_or_indirect); if (unlikely(!__pyx_tuple__25)) __PYX_ERR(1, 286, __pyx_L1_error)
- __Pyx_GOTREF(__pyx_tuple__25);
- __Pyx_GIVEREF(__pyx_tuple__25);
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- __Pyx_GOTREF(__pyx_tuple__26);
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- __Pyx_GOTREF(__pyx_tuple__27);
- __Pyx_GIVEREF(__pyx_tuple__27);
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- __Pyx_GOTREF(__pyx_tuple__28);
- __Pyx_GIVEREF(__pyx_tuple__28);
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Py_INCREF((PyObject *) memview);
} else {
@@ -26312,18 +36513,16 @@ static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *memslice,
int have_gil, int lineno) {
int last_time;
struct __pyx_memoryview_obj *memview = memslice->memview;
- if (!memview ) {
- return;
- } else if ((PyObject *) memview == Py_None) {
+ if (unlikely(!memview || (PyObject *) memview == Py_None)) {
memslice->memview = NULL;
return;
}
- if (__pyx_get_slice_count(memview) <= 0)
+ if (unlikely(__pyx_get_slice_count(memview) <= 0))
__pyx_fatalerror("Acquisition count is %d (line %d)",
__pyx_get_slice_count(memview), lineno);
last_time = __pyx_sub_acquisition_count(memview) == 1;
memslice->data = NULL;
- if (last_time) {
+ if (unlikely(last_time)) {
if (have_gil) {
Py_CLEAR(memslice->memview);
} else {
@@ -26336,6 +36535,264 @@ static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *memslice,
}
}
+/* Profile */
+#if CYTHON_PROFILE
+static int __Pyx_TraceSetupAndCall(PyCodeObject** code,
+ PyFrameObject** frame,
+ PyThreadState* tstate,
+ const char *funcname,
+ const char *srcfile,
+ int firstlineno) {
+ PyObject *type, *value, *traceback;
+ int retval;
+ if (*frame == NULL || !CYTHON_PROFILE_REUSE_FRAME) {
+ if (*code == NULL) {
+ *code = __Pyx_createFrameCodeObject(funcname, srcfile, firstlineno);
+ if (*code == NULL) return 0;
+ }
+ *frame = PyFrame_New(
+ tstate, /*PyThreadState *tstate*/
+ *code, /*PyCodeObject *code*/
+ __pyx_d, /*PyObject *globals*/
+ 0 /*PyObject *locals*/
+ );
+ if (*frame == NULL) return 0;
+ if (CYTHON_TRACE && (*frame)->f_trace == NULL) {
+ Py_INCREF(Py_None);
+ (*frame)->f_trace = Py_None;
+ }
+#if PY_VERSION_HEX < 0x030400B1
+ } else {
+ (*frame)->f_tstate = tstate;
+#endif
+ }
+ __Pyx_PyFrame_SetLineNumber(*frame, firstlineno);
+ retval = 1;
+ tstate->tracing++;
+ __Pyx_SetTracing(tstate, 0);
+ __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
+ #if CYTHON_TRACE
+ if (tstate->c_tracefunc)
+ retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0;
+ if (retval && tstate->c_profilefunc)
+ #endif
+ retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0;
+ __Pyx_SetTracing(tstate, (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc)));
+ tstate->tracing--;
+ if (retval) {
+ __Pyx_ErrRestoreInState(tstate, type, value, traceback);
+ return __Pyx_IsTracing(tstate, 0, 0) && retval;
+ } else {
+ Py_XDECREF(type);
+ Py_XDECREF(value);
+ Py_XDECREF(traceback);
+ return -1;
+ }
+}
+static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) {
+ PyCodeObject *py_code = 0;
+#if PY_MAJOR_VERSION >= 3
+ py_code = PyCode_NewEmpty(srcfile, funcname, firstlineno);
+ if (likely(py_code)) {
+ py_code->co_flags |= CO_OPTIMIZED | CO_NEWLOCALS;
+ }
+#else
+ PyObject *py_srcfile = 0;
+ PyObject *py_funcname = 0;
+ py_funcname = PyString_FromString(funcname);
+ if (unlikely(!py_funcname)) goto bad;
+ py_srcfile = PyString_FromString(srcfile);
+ if (unlikely(!py_srcfile)) goto bad;
+ py_code = PyCode_New(
+ 0,
+ 0,
+ 0,
+ CO_OPTIMIZED | CO_NEWLOCALS,
+ __pyx_empty_bytes, /*PyObject *code,*/
+ __pyx_empty_tuple, /*PyObject *consts,*/
+ __pyx_empty_tuple, /*PyObject *names,*/
+ __pyx_empty_tuple, /*PyObject *varnames,*/
+ __pyx_empty_tuple, /*PyObject *freevars,*/
+ __pyx_empty_tuple, /*PyObject *cellvars,*/
+ py_srcfile, /*PyObject *filename,*/
+ py_funcname, /*PyObject *name,*/
+ firstlineno,
+ __pyx_empty_bytes /*PyObject *lnotab*/
+ );
+bad:
+ Py_XDECREF(py_srcfile);
+ Py_XDECREF(py_funcname);
+#endif
+ return py_code;
+}
+#endif
+
+/* WriteUnraisableException */
+static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
+ CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename,
+ int full_traceback, CYTHON_UNUSED int nogil) {
+ PyObject *old_exc, *old_val, *old_tb;
+ PyObject *ctx;
+ __Pyx_PyThreadState_declare
+#ifdef WITH_THREAD
+ PyGILState_STATE state;
+ if (nogil)
+ state = PyGILState_Ensure();
+#ifdef _MSC_VER
+ else state = (PyGILState_STATE)-1;
+#endif
+#endif
+ __Pyx_PyThreadState_assign
+ __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
+ if (full_traceback) {
+ Py_XINCREF(old_exc);
+ Py_XINCREF(old_val);
+ Py_XINCREF(old_tb);
+ __Pyx_ErrRestore(old_exc, old_val, old_tb);
+ PyErr_PrintEx(1);
+ }
+ #if PY_MAJOR_VERSION < 3
+ ctx = PyString_FromString(name);
+ #else
+ ctx = PyUnicode_FromString(name);
+ #endif
+ __Pyx_ErrRestore(old_exc, old_val, old_tb);
+ if (!ctx) {
+ PyErr_WriteUnraisable(Py_None);
+ } else {
+ PyErr_WriteUnraisable(ctx);
+ Py_DECREF(ctx);
+ }
+#ifdef WITH_THREAD
+ if (nogil)
+ PyGILState_Release(state);
+#endif
+}
+
+/* PyIntBinop */
+#if !CYTHON_COMPILING_IN_PYPY
+static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
+ (void)inplace;
+ (void)zerodivision_check;
+ #if PY_MAJOR_VERSION < 3
+ if (likely(PyInt_CheckExact(op1))) {
+ const long b = intval;
+ long x;
+ long a = PyInt_AS_LONG(op1);
+ x = (long)((unsigned long)a - b);
+ if (likely((x^a) >= 0 || (x^~b) >= 0))
+ return PyInt_FromLong(x);
+ return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
+ }
+ #endif
+ #if CYTHON_USE_PYLONG_INTERNALS
+ if (likely(PyLong_CheckExact(op1))) {
+ const long b = intval;
+ long a, x;
+#ifdef HAVE_LONG_LONG
+ const PY_LONG_LONG llb = intval;
+ PY_LONG_LONG lla, llx;
+#endif
+ const digit* digits = ((PyLongObject*)op1)->ob_digit;
+ const Py_ssize_t size = Py_SIZE(op1);
+ if (likely(__Pyx_sst_abs(size) <= 1)) {
+ a = likely(size) ? digits[0] : 0;
+ if (size == -1) a = -a;
+ } else {
+ switch (size) {
+ case -2:
+ if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
+ a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
+ break;
+#ifdef HAVE_LONG_LONG
+ } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
+ lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
+ goto long_long;
+#endif
+ }
+ CYTHON_FALLTHROUGH;
+ case 2:
+ if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
+ a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
+ break;
+#ifdef HAVE_LONG_LONG
+ } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
+ lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
+ goto long_long;
+#endif
+ }
+ CYTHON_FALLTHROUGH;
+ case -3:
+ if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
+ a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
+ break;
+#ifdef HAVE_LONG_LONG
+ } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
+ lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
+ goto long_long;
+#endif
+ }
+ CYTHON_FALLTHROUGH;
+ case 3:
+ if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
+ a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
+ break;
+#ifdef HAVE_LONG_LONG
+ } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
+ lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
+ goto long_long;
+#endif
+ }
+ CYTHON_FALLTHROUGH;
+ case -4:
+ if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
+ a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
+ break;
+#ifdef HAVE_LONG_LONG
+ } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
+ lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
+ goto long_long;
+#endif
+ }
+ CYTHON_FALLTHROUGH;
+ case 4:
+ if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
+ a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
+ break;
+#ifdef HAVE_LONG_LONG
+ } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
+ lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
+ goto long_long;
+#endif
+ }
+ CYTHON_FALLTHROUGH;
+ default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
+ }
+ }
+ x = a - b;
+ return PyLong_FromLong(x);
+#ifdef HAVE_LONG_LONG
+ long_long:
+ llx = lla - llb;
+ return PyLong_FromLongLong(llx);
+#endif
+
+
+ }
+ #endif
+ if (PyFloat_CheckExact(op1)) {
+ const long b = intval;
+ double a = PyFloat_AS_DOUBLE(op1);
+ double result;
+ PyFPE_START_PROTECT("subtract", return NULL)
+ result = ((double)a) - (double)b;
+ PyFPE_END_PROTECT(result)
+ return PyFloat_FromDouble(result);
+ }
+ return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
+}
+#endif
+
/* ArgTypeTest */
static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact)
{
@@ -26578,9 +37035,9 @@ static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
if (stop < 0)
stop += length;
}
+ if (unlikely(stop <= start))
+ return __Pyx_NewRef(__pyx_empty_unicode);
length = stop - start;
- if (unlikely(length <= 0))
- return PyUnicode_FromUnicode(NULL, 0);
cstring += start;
if (decode_func) {
return decode_func(cstring, length, errors);
@@ -26837,7 +37294,7 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
{
#if PY_MAJOR_VERSION >= 3
if (level == -1) {
- if (strchr(__Pyx_MODULE_NAME, '.')) {
+ if ((1) && (strchr(__Pyx_MODULE_NAME, '.'))) {
module = PyImport_ImportModuleLevelObject(
name, global_dict, empty_dict, list, 1);
if (!module) {
@@ -27209,6 +37666,28 @@ bad:
return -1;
}
+/* PyObjectGetAttrStrNoError */
+static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
+ __Pyx_PyThreadState_declare
+ __Pyx_PyThreadState_assign
+ if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
+ __Pyx_PyErr_Clear();
+}
+static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
+ PyObject *result;
+#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
+ PyTypeObject* tp = Py_TYPE(obj);
+ if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
+ return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1);
+ }
+#endif
+ result = __Pyx_PyObject_GetAttrStr(obj, attr_name);
+ if (unlikely(!result)) {
+ __Pyx_PyObject_GetAttrStr_ClearAttributeError();
+ }
+ return result;
+}
+
/* SetupReduce */
static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
int ret;
@@ -27254,15 +37733,23 @@ static int __Pyx_setup_reduce(PyObject* type_obj) {
#endif
reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD;
if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
- reduce_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_cython); if (unlikely(!reduce_cython)) goto __PYX_BAD;
- ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
- ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
+ reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython);
+ if (likely(reduce_cython)) {
+ ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
+ ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
+ } else if (reduce == object_reduce || PyErr_Occurred()) {
+ goto __PYX_BAD;
+ }
setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
if (!setstate) PyErr_Clear();
if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
- setstate_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate_cython); if (unlikely(!setstate_cython)) goto __PYX_BAD;
- ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
- ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
+ setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython);
+ if (likely(setstate_cython)) {
+ ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
+ ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
+ } else if (!setstate || PyErr_Occurred()) {
+ goto __PYX_BAD;
+ }
}
PyType_Modified((PyTypeObject*)type_obj);
}
@@ -27324,7 +37811,7 @@ bad:
goto done;
}
-/* CythonFunction */
+/* CythonFunctionShared */
#include <structmember.h>
static PyObject *
__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
@@ -27617,7 +38104,8 @@ static PyObject *
__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
{
#if PY_MAJOR_VERSION >= 3
- return PyUnicode_FromString(m->func.m_ml->ml_name);
+ Py_INCREF(m->func_qualname);
+ return m->func_qualname;
#else
return PyString_FromString(m->func.m_ml->ml_name);
#endif
@@ -27631,10 +38119,9 @@ static PyMethodDef __pyx_CyFunction_methods[] = {
#else
#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist)
#endif
-static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname,
- PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
- __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type);
- if (op == NULL)
+static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname,
+ PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
+ if (unlikely(op == NULL))
return NULL;
op->flags = flags;
__Pyx_CyFunction_weakreflist(op) = NULL;
@@ -27655,12 +38142,12 @@ static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int f
Py_XINCREF(code);
op->func_code = code;
op->defaults_pyobjects = 0;
+ op->defaults_size = 0;
op->defaults = NULL;
op->defaults_tuple = NULL;
op->defaults_kwdict = NULL;
op->defaults_getter = NULL;
op->func_annotations = NULL;
- PyObject_GC_Track(op);
return (PyObject *) op;
}
static int
@@ -27723,6 +38210,7 @@ static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit,
}
static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
{
+#if PY_MAJOR_VERSION < 3
__pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
Py_INCREF(func);
@@ -27735,6 +38223,7 @@ static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObj
}
if (obj == Py_None)
obj = NULL;
+#endif
return __Pyx_PyMethod_New(func, obj, type);
}
static PyObject*
@@ -27908,6 +38397,7 @@ static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t
return PyErr_NoMemory();
memset(m->defaults, 0, size);
m->defaults_pyobjects = pyobjects;
+ m->defaults_size = size;
return m->defaults;
}
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
@@ -27928,20 +38418,23 @@ static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, Py
/* FusedFunction */
static PyObject *
-__pyx_FusedFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags,
- PyObject *qualname, PyObject *self,
+__pyx_FusedFunction_New(PyMethodDef *ml, int flags,
+ PyObject *qualname, PyObject *closure,
PyObject *module, PyObject *globals,
PyObject *code)
{
- __pyx_FusedFunctionObject *fusedfunc =
- (__pyx_FusedFunctionObject *) __Pyx_CyFunction_New(type, ml, flags, qualname,
- self, module, globals, code);
- if (!fusedfunc)
- return NULL;
- fusedfunc->__signatures__ = NULL;
- fusedfunc->type = NULL;
- fusedfunc->self = NULL;
- return (PyObject *) fusedfunc;
+ PyObject *op = __Pyx_CyFunction_Init(
+ PyObject_GC_New(__pyx_CyFunctionObject, __pyx_FusedFunctionType),
+ ml, flags, qualname, closure, module, globals, code
+ );
+ if (likely(op)) {
+ __pyx_FusedFunctionObject *fusedfunc = (__pyx_FusedFunctionObject *) op;
+ fusedfunc->__signatures__ = NULL;
+ fusedfunc->type = NULL;
+ fusedfunc->self = NULL;
+ PyObject_GC_Track(op);
+ }
+ return op;
}
static void
__pyx_FusedFunction_dealloc(__pyx_FusedFunctionObject *self)
@@ -27981,7 +38474,7 @@ __pyx_FusedFunction_descr_get(PyObject *self, PyObject *obj, PyObject *type)
}
if (obj == Py_None)
obj = NULL;
- meth = (__pyx_FusedFunctionObject *) __pyx_FusedFunction_NewEx(
+ meth = (__pyx_FusedFunctionObject *) __pyx_FusedFunction_New(
((PyCFunctionObject *) func)->m_ml,
((__pyx_CyFunctionObject *) func)->flags,
((__pyx_CyFunctionObject *) func)->func_qualname,
@@ -27991,6 +38484,20 @@ __pyx_FusedFunction_descr_get(PyObject *self, PyObject *obj, PyObject *type)
((__pyx_CyFunctionObject *) func)->func_code);
if (!meth)
return NULL;
+ if (func->func.defaults) {
+ PyObject **pydefaults;
+ int i;
+ if (!__Pyx_CyFunction_InitDefaults((PyObject*)meth,
+ func->func.defaults_size,
+ func->func.defaults_pyobjects)) {
+ Py_XDECREF((PyObject*)meth);
+ return NULL;
+ }
+ memcpy(meth->func.defaults, func->func.defaults, func->func.defaults_size);
+ pydefaults = __Pyx_CyFunction_Defaults(PyObject *, meth);
+ for (i = 0; i < meth->func.defaults_pyobjects; i++)
+ Py_XINCREF(pydefaults[i]);
+ }
Py_XINCREF(func->func.func_classobj);
meth->func.func_classobj = func->func.func_classobj;
Py_XINCREF(func->__signatures__);
@@ -28026,27 +38533,29 @@ __pyx_FusedFunction_getitem(__pyx_FusedFunctionObject *self, PyObject *idx)
if (PyTuple_Check(idx)) {
PyObject *list = PyList_New(0);
Py_ssize_t n = PyTuple_GET_SIZE(idx);
- PyObject *string = NULL;
PyObject *sep = NULL;
int i;
- if (!list)
+ if (unlikely(!list))
return NULL;
for (i = 0; i < n; i++) {
+ int ret;
+ PyObject *string;
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
PyObject *item = PyTuple_GET_ITEM(idx, i);
#else
- PyObject *item = PySequence_ITEM(idx, i);
+ PyObject *item = PySequence_ITEM(idx, i); if (unlikely(!item)) goto __pyx_err;
#endif
string = _obj_to_str(item);
#if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS)
Py_DECREF(item);
#endif
- if (!string || PyList_Append(list, string) < 0)
- goto __pyx_err;
+ if (unlikely(!string)) goto __pyx_err;
+ ret = PyList_Append(list, string);
Py_DECREF(string);
+ if (unlikely(ret < 0)) goto __pyx_err;
}
sep = PyUnicode_FromString("|");
- if (sep)
+ if (likely(sep))
signature = PyUnicode_Join(sep, list);
__pyx_err:
;
@@ -28136,7 +38645,7 @@ __pyx_FusedFunction_call(PyObject *func, PyObject *args, PyObject *kw)
PyErr_Format(PyExc_TypeError,
"First argument should be of type %.200s, got %.200s.",
((PyTypeObject *) binding_func->type)->tp_name,
- self->ob_type->tp_name);
+ Py_TYPE(self)->tp_name);
goto bad;
} else if (unlikely(is_instance == -1)) {
goto bad;
@@ -28255,6 +38764,7 @@ static PyTypeObject __pyx_FusedFunctionType_type = {
#endif
};
static int __pyx_FusedFunction_init(void) {
+ __pyx_FusedFunctionType_type.tp_base = __pyx_CyFunctionType;
__pyx_FusedFunctionType = __Pyx_FetchCommonType(&__pyx_FusedFunctionType_type);
if (__pyx_FusedFunctionType == NULL) {
return -1;
@@ -28264,7 +38774,7 @@ static int __pyx_FusedFunction_init(void) {
/* CLineInTraceback */
#ifndef CYTHON_CLINE_IN_TRACEBACK
-static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) {
+static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) {
PyObject *use_cline;
PyObject *ptype, *pvalue, *ptraceback;
#if CYTHON_COMPILING_IN_CPYTHON
@@ -28368,7 +38878,7 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
int new_max = __pyx_code_cache.max_count + 64;
entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
- __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
+ __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
if (unlikely(!entries)) {
return;
}
@@ -28900,9 +39410,7 @@ static PyObject *
__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
{
const char *ts = *tsp;
- int i = 0, number;
- int ndim = ctx->head->field->type->ndim;
-;
+ int i = 0, number, ndim;
++ts;
if (ctx->new_count != 1) {
PyErr_SetString(PyExc_ValueError,
@@ -28910,6 +39418,7 @@ __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
return NULL;
}
if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
+ ndim = ctx->head->field->type->ndim;
while (*ts && *ts != ')') {
switch (*ts) {
case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue;
@@ -29039,8 +39548,8 @@ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const cha
case 'l': case 'L': case 'q': case 'Q':
case 'f': case 'd': case 'g':
case 'O': case 'p':
- if (ctx->enc_type == *ts && got_Z == ctx->is_complex &&
- ctx->enc_packmode == ctx->new_packmode) {
+ if ((ctx->enc_type == *ts) && (got_Z == ctx->is_complex) &&
+ (ctx->enc_packmode == ctx->new_packmode) && (!ctx->is_valid_array)) {
ctx->enc_count += ctx->new_count;
ctx->new_count = 1;
got_Z = 0;
@@ -29126,13 +39635,13 @@ __pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec)
if (buf->strides) {
if (spec & __Pyx_MEMVIEW_CONTIG) {
if (spec & (__Pyx_MEMVIEW_PTR|__Pyx_MEMVIEW_FULL)) {
- if (buf->strides[dim] != sizeof(void *)) {
+ if (unlikely(buf->strides[dim] != sizeof(void *))) {
PyErr_Format(PyExc_ValueError,
"Buffer is not indirectly contiguous "
"in dimension %d.", dim);
goto fail;
}
- } else if (buf->strides[dim] != buf->itemsize) {
+ } else if (unlikely(buf->strides[dim] != buf->itemsize)) {
PyErr_SetString(PyExc_ValueError,
"Buffer and memoryview are not contiguous "
"in the same dimension.");
@@ -29143,7 +39652,7 @@ __pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec)
Py_ssize_t stride = buf->strides[dim];
if (stride < 0)
stride = -stride;
- if (stride < buf->itemsize) {
+ if (unlikely(stride < buf->itemsize)) {
PyErr_SetString(PyExc_ValueError,
"Buffer and memoryview are not contiguous "
"in the same dimension.");
@@ -29151,17 +39660,17 @@ __pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec)
}
}
} else {
- if (spec & __Pyx_MEMVIEW_CONTIG && dim != ndim - 1) {
+ if (unlikely(spec & __Pyx_MEMVIEW_CONTIG && dim != ndim - 1)) {
PyErr_Format(PyExc_ValueError,
"C-contiguous buffer is not contiguous in "
"dimension %d", dim);
goto fail;
- } else if (spec & (__Pyx_MEMVIEW_PTR)) {
+ } else if (unlikely(spec & (__Pyx_MEMVIEW_PTR))) {
PyErr_Format(PyExc_ValueError,
"C-contiguous buffer is not indirect in "
"dimension %d", dim);
goto fail;
- } else if (buf->suboffsets) {
+ } else if (unlikely(buf->suboffsets)) {
PyErr_SetString(PyExc_ValueError,
"Buffer exposes suboffsets but no strides");
goto fail;
@@ -29175,7 +39684,7 @@ static int
__pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec)
{
if (spec & __Pyx_MEMVIEW_DIRECT) {
- if (buf->suboffsets && buf->suboffsets[dim] >= 0) {
+ if (unlikely(buf->suboffsets && buf->suboffsets[dim] >= 0)) {
PyErr_Format(PyExc_ValueError,
"Buffer not compatible with direct access "
"in dimension %d.", dim);
@@ -29183,7 +39692,7 @@ __pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec
}
}
if (spec & __Pyx_MEMVIEW_PTR) {
- if (!buf->suboffsets || (buf->suboffsets[dim] < 0)) {
+ if (unlikely(!buf->suboffsets || (buf->suboffsets[dim] < 0))) {
PyErr_Format(PyExc_ValueError,
"Buffer is not indirectly accessible "
"in dimension %d.", dim);
@@ -29201,9 +39710,7 @@ __pyx_verify_contig(Py_buffer *buf, int ndim, int c_or_f_flag)
if (c_or_f_flag & __Pyx_IS_F_CONTIG) {
Py_ssize_t stride = 1;
for (i = 0; i < ndim; i++) {
- if (stride * buf->itemsize != buf->strides[i] &&
- buf->shape[i] > 1)
- {
+ if (unlikely(stride * buf->itemsize != buf->strides[i] && buf->shape[i] > 1)) {
PyErr_SetString(PyExc_ValueError,
"Buffer not fortran contiguous.");
goto fail;
@@ -29213,8 +39720,7 @@ __pyx_verify_contig(Py_buffer *buf, int ndim, int c_or_f_flag)
} else if (c_or_f_flag & __Pyx_IS_C_CONTIG) {
Py_ssize_t stride = 1;
for (i = ndim - 1; i >- 1; i--) {
- if (stride * buf->itemsize != buf->strides[i] &&
- buf->shape[i] > 1) {
+ if (unlikely(stride * buf->itemsize != buf->strides[i] && buf->shape[i] > 1)) {
PyErr_SetString(PyExc_ValueError,
"Buffer not C contiguous.");
goto fail;
@@ -29255,7 +39761,7 @@ static int __Pyx_ValidateAndInit_memviewslice(
goto fail;
}
buf = &memview->view;
- if (buf->ndim != ndim) {
+ if (unlikely(buf->ndim != ndim)) {
PyErr_Format(PyExc_ValueError,
"Buffer has wrong number of dimensions (expected %d, got %d)",
ndim, buf->ndim);
@@ -29263,9 +39769,9 @@ static int __Pyx_ValidateAndInit_memviewslice(
}
if (new_memview) {
__Pyx_BufFmt_Init(&ctx, stack, dtype);
- if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
+ if (unlikely(!__Pyx_BufFmt_CheckString(&ctx, buf->format))) goto fail;
}
- if ((unsigned) buf->itemsize != dtype->size) {
+ if (unlikely((unsigned) buf->itemsize != dtype->size)) {
PyErr_Format(PyExc_ValueError,
"Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "u byte%s) "
"does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "u byte%s)",
@@ -29276,15 +39782,17 @@ static int __Pyx_ValidateAndInit_memviewslice(
(dtype->size > 1) ? "s" : "");
goto fail;
}
- for (i = 0; i < ndim; i++) {
- spec = axes_specs[i];
- if (!__pyx_check_strides(buf, i, ndim, spec))
- goto fail;
- if (!__pyx_check_suboffsets(buf, i, ndim, spec))
+ if (buf->len > 0) {
+ for (i = 0; i < ndim; i++) {
+ spec = axes_specs[i];
+ if (unlikely(!__pyx_check_strides(buf, i, ndim, spec)))
+ goto fail;
+ if (unlikely(!__pyx_check_suboffsets(buf, i, ndim, spec)))
+ goto fail;
+ }
+ if (unlikely(buf->strides && !__pyx_verify_contig(buf, ndim, c_or_f_flag)))
goto fail;
}
- if (buf->strides && !__pyx_verify_contig(buf, ndim, c_or_f_flag))
- goto fail;
if (unlikely(__Pyx_init_memviewslice(memview, ndim, memviewslice,
new_memview != NULL) == -1)) {
goto fail;
@@ -29369,7 +39877,7 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_PY_LONG_LONG(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_float(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
@@ -29380,7 +39888,7 @@ __pyx_fail:
}
retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
(PyBUF_C_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_PY_LONG_LONG, stack,
+ &__Pyx_TypeInfo_float, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29392,7 +39900,7 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_float(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_double(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
@@ -29403,7 +39911,30 @@ __pyx_fail:
}
retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
(PyBUF_C_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_float, stack,
+ &__Pyx_TypeInfo_double, stack,
+ &result, obj);
+ if (unlikely(retcode == -1))
+ goto __pyx_fail;
+ return result;
+__pyx_fail:
+ result.memview = NULL;
+ result.data = NULL;
+ return result;
+}
+
+/* ObjectToMemviewSlice */
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__short(PyObject *obj, int writable_flag) {
+ __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
+ __Pyx_BufFmt_StackElem stack[1];
+ int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW) };
+ int retcode;
+ if (obj == Py_None) {
+ result.memview = (struct __pyx_memoryview_obj *) Py_None;
+ return result;
+ }
+ retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_F_CONTIG,
+ (PyBUF_F_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
+ &__Pyx_TypeInfo_short, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29415,18 +39946,18 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_dc_double(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__int(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
- int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
+ int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW) };
int retcode;
if (obj == Py_None) {
result.memview = (struct __pyx_memoryview_obj *) Py_None;
return result;
}
- retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
- (PyBUF_C_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_double, stack,
+ retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_F_CONTIG,
+ (PyBUF_F_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
+ &__Pyx_TypeInfo_int, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29438,7 +39969,7 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__short(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__long(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW) };
@@ -29449,7 +39980,7 @@ __pyx_fail:
}
retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_F_CONTIG,
(PyBUF_F_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_short, stack,
+ &__Pyx_TypeInfo_long, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29461,18 +39992,18 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__int(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_short(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
- int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW) };
+ int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
int retcode;
if (obj == Py_None) {
result.memview = (struct __pyx_memoryview_obj *) Py_None;
return result;
}
- retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_F_CONTIG,
- (PyBUF_F_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_int, stack,
+ retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
+ (PyBUF_C_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 1,
+ &__Pyx_TypeInfo_short, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29484,18 +40015,18 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__long(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_int(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
- int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW) };
+ int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
int retcode;
if (obj == Py_None) {
result.memview = (struct __pyx_memoryview_obj *) Py_None;
return result;
}
- retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_F_CONTIG,
- (PyBUF_F_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_long, stack,
+ retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
+ (PyBUF_C_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 1,
+ &__Pyx_TypeInfo_int, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29507,18 +40038,18 @@ __pyx_fail:
}
/* ObjectToMemviewSlice */
- static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dcd__PY_LONG_LONG(PyObject *obj, int writable_flag) {
+ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_long(PyObject *obj, int writable_flag) {
__Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
__Pyx_BufFmt_StackElem stack[1];
- int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW) };
+ int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
int retcode;
if (obj == Py_None) {
result.memview = (struct __pyx_memoryview_obj *) Py_None;
return result;
}
- retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_F_CONTIG,
- (PyBUF_F_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 2,
- &__Pyx_TypeInfo_PY_LONG_LONG, stack,
+ retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
+ (PyBUF_C_CONTIGUOUS | PyBUF_FORMAT) | writable_flag, 1,
+ &__Pyx_TypeInfo_long, stack,
&result, obj);
if (unlikely(retcode == -1))
goto __pyx_fail;
@@ -29529,66 +40060,62 @@ __pyx_fail:
return result;
}
-/* CIntToPy */
- static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
- const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
- const int is_unsigned = neg_one > const_zero;
- if (is_unsigned) {
- if (sizeof(long) < sizeof(long)) {
- return PyInt_FromLong((long) value);
- } else if (sizeof(long) <= sizeof(unsigned long)) {
- return PyLong_FromUnsignedLong((unsigned long) value);
-#ifdef HAVE_LONG_LONG
- } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
- return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
-#endif
- }
- } else {
- if (sizeof(long) <= sizeof(long)) {
- return PyInt_FromLong((long) value);
-#ifdef HAVE_LONG_LONG
- } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
- return PyLong_FromLongLong((PY_LONG_LONG) value);
-#endif
- }
- }
- {
- int one = 1; int little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&value;
- return _PyLong_FromByteArray(bytes, sizeof(long),
- little, !is_unsigned);
+/* CIntFromPyVerify */
+ #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
+ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
+#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
+ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
+#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
+ {\
+ func_type value = func_value;\
+ if (sizeof(target_type) < sizeof(func_type)) {\
+ if (unlikely(value != (func_type) (target_type) value)) {\
+ func_type zero = 0;\
+ if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
+ return (target_type) -1;\
+ if (is_unsigned && unlikely(value < zero))\
+ goto raise_neg_overflow;\
+ else\
+ goto raise_overflow;\
+ }\
+ }\
+ return (target_type) value;\
}
+
+/* MemviewDtypeToObject */
+ static CYTHON_INLINE PyObject *__pyx_memview_get_long(const char *itemp) {
+ return (PyObject *) __Pyx_PyInt_From_long(*(long *) itemp);
+}
+static CYTHON_INLINE int __pyx_memview_set_long(const char *itemp, PyObject *obj) {
+ long value = __Pyx_PyInt_As_long(obj);
+ if ((value == (long)-1) && PyErr_Occurred())
+ return 0;
+ *(long *) itemp = value;
+ return 1;
}
-/* CIntToPy */
- static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
- const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
- const int is_unsigned = neg_one > const_zero;
- if (is_unsigned) {
- if (sizeof(int) < sizeof(long)) {
- return PyInt_FromLong((long) value);
- } else if (sizeof(int) <= sizeof(unsigned long)) {
- return PyLong_FromUnsignedLong((unsigned long) value);
-#ifdef HAVE_LONG_LONG
- } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
- return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
-#endif
- }
- } else {
- if (sizeof(int) <= sizeof(long)) {
- return PyInt_FromLong((long) value);
-#ifdef HAVE_LONG_LONG
- } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
- return PyLong_FromLongLong((PY_LONG_LONG) value);
-#endif
- }
- }
- {
- int one = 1; int little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&value;
- return _PyLong_FromByteArray(bytes, sizeof(int),
- little, !is_unsigned);
- }
+/* MemviewDtypeToObject */
+ static CYTHON_INLINE PyObject *__pyx_memview_get_short(const char *itemp) {
+ return (PyObject *) __Pyx_PyInt_From_short(*(short *) itemp);
+}
+static CYTHON_INLINE int __pyx_memview_set_short(const char *itemp, PyObject *obj) {
+ short value = __Pyx_PyInt_As_short(obj);
+ if ((value == (short)-1) && PyErr_Occurred())
+ return 0;
+ *(short *) itemp = value;
+ return 1;
+}
+
+/* MemviewDtypeToObject */
+ static CYTHON_INLINE PyObject *__pyx_memview_get_int(const char *itemp) {
+ return (PyObject *) __Pyx_PyInt_From_int(*(int *) itemp);
+}
+static CYTHON_INLINE int __pyx_memview_set_int(const char *itemp, PyObject *obj) {
+ int value = __Pyx_PyInt_As_int(obj);
+ if ((value == (int)-1) && PyErr_Occurred())
+ return 0;
+ *(int *) itemp = value;
+ return 1;
}
/* MemviewSliceCopyTemplate */
@@ -29609,113 +40136,261 @@ __pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
struct __pyx_memoryview_obj *memview_obj = NULL;
__Pyx_RefNannySetupContext("__pyx_memoryview_copy_new_contig", 0);
for (i = 0; i < ndim; i++) {
- if (from_mvs->suboffsets[i] >= 0) {
+ if (unlikely(from_mvs->suboffsets[i] >= 0)) {
PyErr_Format(PyExc_ValueError, "Cannot copy memoryview slice with "
"indirect dimensions (axis %d)", i);
goto fail;
}
- }
- shape_tuple = PyTuple_New(ndim);
- if (unlikely(!shape_tuple)) {
- goto fail;
- }
- __Pyx_GOTREF(shape_tuple);
- for(i = 0; i < ndim; i++) {
- temp_int = PyInt_FromSsize_t(from_mvs->shape[i]);
- if(unlikely(!temp_int)) {
- goto fail;
- } else {
- PyTuple_SET_ITEM(shape_tuple, i, temp_int);
- temp_int = NULL;
+ }
+ shape_tuple = PyTuple_New(ndim);
+ if (unlikely(!shape_tuple)) {
+ goto fail;
+ }
+ __Pyx_GOTREF(shape_tuple);
+ for(i = 0; i < ndim; i++) {
+ temp_int = PyInt_FromSsize_t(from_mvs->shape[i]);
+ if(unlikely(!temp_int)) {
+ goto fail;
+ } else {
+ PyTuple_SET_ITEM(shape_tuple, i, temp_int);
+ temp_int = NULL;
+ }
+ }
+ array_obj = __pyx_array_new(shape_tuple, sizeof_dtype, buf->format, (char *) mode, NULL);
+ if (unlikely(!array_obj)) {
+ goto fail;
+ }
+ __Pyx_GOTREF(array_obj);
+ memview_obj = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
+ (PyObject *) array_obj, contig_flag,
+ dtype_is_object,
+ from_mvs->memview->typeinfo);
+ if (unlikely(!memview_obj))
+ goto fail;
+ if (unlikely(__Pyx_init_memviewslice(memview_obj, ndim, &new_mvs, 1) < 0))
+ goto fail;
+ if (unlikely(__pyx_memoryview_copy_contents(*from_mvs, new_mvs, ndim, ndim,
+ dtype_is_object) < 0))
+ goto fail;
+ goto no_fail;
+fail:
+ __Pyx_XDECREF(new_mvs.memview);
+ new_mvs.memview = NULL;
+ new_mvs.data = NULL;
+no_fail:
+ __Pyx_XDECREF(shape_tuple);
+ __Pyx_XDECREF(temp_int);
+ __Pyx_XDECREF(array_obj);
+ __Pyx_RefNannyFinishContext();
+ return new_mvs;
+}
+
+/* CIntFromPy */
+ static CYTHON_INLINE short __Pyx_PyInt_As_short(PyObject *x) {
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const short neg_one = (short) -1, const_zero = (short) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
+ const int is_unsigned = neg_one > const_zero;
+#if PY_MAJOR_VERSION < 3
+ if (likely(PyInt_Check(x))) {
+ if (sizeof(short) < sizeof(long)) {
+ __PYX_VERIFY_RETURN_INT(short, long, PyInt_AS_LONG(x))
+ } else {
+ long val = PyInt_AS_LONG(x);
+ if (is_unsigned && unlikely(val < 0)) {
+ goto raise_neg_overflow;
+ }
+ return (short) val;
+ }
+ } else
+#endif
+ if (likely(PyLong_Check(x))) {
+ if (is_unsigned) {
+#if CYTHON_USE_PYLONG_INTERNALS
+ const digit* digits = ((PyLongObject*)x)->ob_digit;
+ switch (Py_SIZE(x)) {
+ case 0: return (short) 0;
+ case 1: __PYX_VERIFY_RETURN_INT(short, digit, digits[0])
+ case 2:
+ if (8 * sizeof(short) > 1 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) >= 2 * PyLong_SHIFT) {
+ return (short) (((((short)digits[1]) << PyLong_SHIFT) | (short)digits[0]));
+ }
+ }
+ break;
+ case 3:
+ if (8 * sizeof(short) > 2 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) >= 3 * PyLong_SHIFT) {
+ return (short) (((((((short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0]));
+ }
+ }
+ break;
+ case 4:
+ if (8 * sizeof(short) > 3 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) >= 4 * PyLong_SHIFT) {
+ return (short) (((((((((short)digits[3]) << PyLong_SHIFT) | (short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0]));
+ }
+ }
+ break;
+ }
+#endif
+#if CYTHON_COMPILING_IN_CPYTHON
+ if (unlikely(Py_SIZE(x) < 0)) {
+ goto raise_neg_overflow;
+ }
+#else
+ {
+ int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
+ if (unlikely(result < 0))
+ return (short) -1;
+ if (unlikely(result == 1))
+ goto raise_neg_overflow;
+ }
+#endif
+ if (sizeof(short) <= sizeof(unsigned long)) {
+ __PYX_VERIFY_RETURN_INT_EXC(short, unsigned long, PyLong_AsUnsignedLong(x))
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) {
+ __PYX_VERIFY_RETURN_INT_EXC(short, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
+#endif
+ }
+ } else {
+#if CYTHON_USE_PYLONG_INTERNALS
+ const digit* digits = ((PyLongObject*)x)->ob_digit;
+ switch (Py_SIZE(x)) {
+ case 0: return (short) 0;
+ case -1: __PYX_VERIFY_RETURN_INT(short, sdigit, (sdigit) (-(sdigit)digits[0]))
+ case 1: __PYX_VERIFY_RETURN_INT(short, digit, +digits[0])
+ case -2:
+ if (8 * sizeof(short) - 1 > 1 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) - 1 > 2 * PyLong_SHIFT) {
+ return (short) (((short)-1)*(((((short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
+ }
+ }
+ break;
+ case 2:
+ if (8 * sizeof(short) > 1 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) - 1 > 2 * PyLong_SHIFT) {
+ return (short) ((((((short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
+ }
+ }
+ break;
+ case -3:
+ if (8 * sizeof(short) - 1 > 2 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) - 1 > 3 * PyLong_SHIFT) {
+ return (short) (((short)-1)*(((((((short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
+ }
+ }
+ break;
+ case 3:
+ if (8 * sizeof(short) > 2 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) - 1 > 3 * PyLong_SHIFT) {
+ return (short) ((((((((short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
+ }
+ }
+ break;
+ case -4:
+ if (8 * sizeof(short) - 1 > 3 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) - 1 > 4 * PyLong_SHIFT) {
+ return (short) (((short)-1)*(((((((((short)digits[3]) << PyLong_SHIFT) | (short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
+ }
+ }
+ break;
+ case 4:
+ if (8 * sizeof(short) > 3 * PyLong_SHIFT) {
+ if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
+ __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
+ } else if (8 * sizeof(short) - 1 > 4 * PyLong_SHIFT) {
+ return (short) ((((((((((short)digits[3]) << PyLong_SHIFT) | (short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
+ }
+ }
+ break;
+ }
+#endif
+ if (sizeof(short) <= sizeof(long)) {
+ __PYX_VERIFY_RETURN_INT_EXC(short, long, PyLong_AsLong(x))
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) {
+ __PYX_VERIFY_RETURN_INT_EXC(short, PY_LONG_LONG, PyLong_AsLongLong(x))
+#endif
+ }
+ }
+ {
+#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
+ PyErr_SetString(PyExc_RuntimeError,
+ "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
+#else
+ short val;
+ PyObject *v = __Pyx_PyNumber_IntOrLong(x);
+ #if PY_MAJOR_VERSION < 3
+ if (likely(v) && !PyLong_Check(v)) {
+ PyObject *tmp = v;
+ v = PyNumber_Long(tmp);
+ Py_DECREF(tmp);
+ }
+ #endif
+ if (likely(v)) {
+ int one = 1; int is_little = (int)*(unsigned char *)&one;
+ unsigned char *bytes = (unsigned char *)&val;
+ int ret = _PyLong_AsByteArray((PyLongObject *)v,
+ bytes, sizeof(val),
+ is_little, !is_unsigned);
+ Py_DECREF(v);
+ if (likely(!ret))
+ return val;
+ }
+#endif
+ return (short) -1;
}
+ } else {
+ short val;
+ PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
+ if (!tmp) return (short) -1;
+ val = __Pyx_PyInt_As_short(tmp);
+ Py_DECREF(tmp);
+ return val;
}
- array_obj = __pyx_array_new(shape_tuple, sizeof_dtype, buf->format, (char *) mode, NULL);
- if (unlikely(!array_obj)) {
- goto fail;
- }
- __Pyx_GOTREF(array_obj);
- memview_obj = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
- (PyObject *) array_obj, contig_flag,
- dtype_is_object,
- from_mvs->memview->typeinfo);
- if (unlikely(!memview_obj))
- goto fail;
- if (unlikely(__Pyx_init_memviewslice(memview_obj, ndim, &new_mvs, 1) < 0))
- goto fail;
- if (unlikely(__pyx_memoryview_copy_contents(*from_mvs, new_mvs, ndim, ndim,
- dtype_is_object) < 0))
- goto fail;
- goto no_fail;
-fail:
- __Pyx_XDECREF(new_mvs.memview);
- new_mvs.memview = NULL;
- new_mvs.data = NULL;
-no_fail:
- __Pyx_XDECREF(shape_tuple);
- __Pyx_XDECREF(temp_int);
- __Pyx_XDECREF(array_obj);
- __Pyx_RefNannyFinishContext();
- return new_mvs;
-}
-
-/* BytesContains */
- static CYTHON_INLINE int __Pyx_BytesContains(PyObject* bytes, char character) {
- const Py_ssize_t length = PyBytes_GET_SIZE(bytes);
- char* char_start = PyBytes_AS_STRING(bytes);
- return memchr(char_start, (unsigned char)character, (size_t)length) != NULL;
-}
-
-/* ImportNumPyArray */
- static PyObject* __Pyx__ImportNumPyArray(void) {
- PyObject *numpy_module, *ndarray_object = NULL;
- numpy_module = __Pyx_Import(__pyx_n_s_numpy, NULL, 0);
- if (likely(numpy_module)) {
- ndarray_object = PyObject_GetAttrString(numpy_module, "ndarray");
- Py_DECREF(numpy_module);
- }
- if (unlikely(!ndarray_object)) {
- PyErr_Clear();
- }
- if (unlikely(!ndarray_object || !PyObject_TypeCheck(ndarray_object, &PyType_Type))) {
- Py_XDECREF(ndarray_object);
- Py_INCREF(Py_None);
- ndarray_object = Py_None;
- }
- return ndarray_object;
-}
-static CYTHON_INLINE PyObject* __Pyx_ImportNumPyArrayTypeIfAvailable(void) {
- if (unlikely(!__pyx_numpy_ndarray)) {
- __pyx_numpy_ndarray = __Pyx__ImportNumPyArray();
- }
- Py_INCREF(__pyx_numpy_ndarray);
- return __pyx_numpy_ndarray;
+raise_overflow:
+ PyErr_SetString(PyExc_OverflowError,
+ "value too large to convert to short");
+ return (short) -1;
+raise_neg_overflow:
+ PyErr_SetString(PyExc_OverflowError,
+ "can't convert negative value to short");
+ return (short) -1;
}
-/* CIntFromPyVerify */
- #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
- __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
-#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
- __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
-#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
- {\
- func_type value = func_value;\
- if (sizeof(target_type) < sizeof(func_type)) {\
- if (unlikely(value != (func_type) (target_type) value)) {\
- func_type zero = 0;\
- if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
- return (target_type) -1;\
- if (is_unsigned && unlikely(value < zero))\
- goto raise_neg_overflow;\
- else\
- goto raise_overflow;\
- }\
- }\
- return (target_type) value;\
- }
-
/* CIntFromPy */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
- const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const int neg_one = (int) -1, const_zero = (int) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_Check(x))) {
@@ -29904,7 +40579,14 @@ raise_neg_overflow:
/* CIntFromPy */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
- const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const long neg_one = (long) -1, const_zero = (long) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_Check(x))) {
@@ -30091,9 +40773,163 @@ raise_neg_overflow:
return (long) -1;
}
+/* CIntToPy */
+ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const long neg_one = (long) -1, const_zero = (long) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
+ const int is_unsigned = neg_one > const_zero;
+ if (is_unsigned) {
+ if (sizeof(long) < sizeof(long)) {
+ return PyInt_FromLong((long) value);
+ } else if (sizeof(long) <= sizeof(unsigned long)) {
+ return PyLong_FromUnsignedLong((unsigned long) value);
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
+ return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
+#endif
+ }
+ } else {
+ if (sizeof(long) <= sizeof(long)) {
+ return PyInt_FromLong((long) value);
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
+ return PyLong_FromLongLong((PY_LONG_LONG) value);
+#endif
+ }
+ }
+ {
+ int one = 1; int little = (int)*(unsigned char *)&one;
+ unsigned char *bytes = (unsigned char *)&value;
+ return _PyLong_FromByteArray(bytes, sizeof(long),
+ little, !is_unsigned);
+ }
+}
+
+/* CIntToPy */
+ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const int neg_one = (int) -1, const_zero = (int) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
+ const int is_unsigned = neg_one > const_zero;
+ if (is_unsigned) {
+ if (sizeof(int) < sizeof(long)) {
+ return PyInt_FromLong((long) value);
+ } else if (sizeof(int) <= sizeof(unsigned long)) {
+ return PyLong_FromUnsignedLong((unsigned long) value);
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
+ return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
+#endif
+ }
+ } else {
+ if (sizeof(int) <= sizeof(long)) {
+ return PyInt_FromLong((long) value);
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
+ return PyLong_FromLongLong((PY_LONG_LONG) value);
+#endif
+ }
+ }
+ {
+ int one = 1; int little = (int)*(unsigned char *)&one;
+ unsigned char *bytes = (unsigned char *)&value;
+ return _PyLong_FromByteArray(bytes, sizeof(int),
+ little, !is_unsigned);
+ }
+}
+
+/* CIntToPy */
+ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value) {
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const short neg_one = (short) -1, const_zero = (short) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
+ const int is_unsigned = neg_one > const_zero;
+ if (is_unsigned) {
+ if (sizeof(short) < sizeof(long)) {
+ return PyInt_FromLong((long) value);
+ } else if (sizeof(short) <= sizeof(unsigned long)) {
+ return PyLong_FromUnsignedLong((unsigned long) value);
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) {
+ return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
+#endif
+ }
+ } else {
+ if (sizeof(short) <= sizeof(long)) {
+ return PyInt_FromLong((long) value);
+#ifdef HAVE_LONG_LONG
+ } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) {
+ return PyLong_FromLongLong((PY_LONG_LONG) value);
+#endif
+ }
+ }
+ {
+ int one = 1; int little = (int)*(unsigned char *)&one;
+ unsigned char *bytes = (unsigned char *)&value;
+ return _PyLong_FromByteArray(bytes, sizeof(short),
+ little, !is_unsigned);
+ }
+}
+
+/* BytesContains */
+ static CYTHON_INLINE int __Pyx_BytesContains(PyObject* bytes, char character) {
+ const Py_ssize_t length = PyBytes_GET_SIZE(bytes);
+ char* char_start = PyBytes_AS_STRING(bytes);
+ return memchr(char_start, (unsigned char)character, (size_t)length) != NULL;
+}
+
+/* ImportNumPyArray */
+ static PyObject* __Pyx__ImportNumPyArray(void) {
+ PyObject *numpy_module, *ndarray_object = NULL;
+ numpy_module = __Pyx_Import(__pyx_n_s_numpy, NULL, 0);
+ if (likely(numpy_module)) {
+ ndarray_object = PyObject_GetAttrString(numpy_module, "ndarray");
+ Py_DECREF(numpy_module);
+ }
+ if (unlikely(!ndarray_object)) {
+ PyErr_Clear();
+ }
+ if (unlikely(!ndarray_object || !PyObject_TypeCheck(ndarray_object, &PyType_Type))) {
+ Py_XDECREF(ndarray_object);
+ Py_INCREF(Py_None);
+ ndarray_object = Py_None;
+ }
+ return ndarray_object;
+}
+static CYTHON_INLINE PyObject* __Pyx_ImportNumPyArrayTypeIfAvailable(void) {
+ if (unlikely(!__pyx_numpy_ndarray)) {
+ __pyx_numpy_ndarray = __Pyx__ImportNumPyArray();
+ }
+ Py_INCREF(__pyx_numpy_ndarray);
+ return __pyx_numpy_ndarray;
+}
+
/* CIntFromPy */
static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) {
- const char neg_one = (char) ((char) 0 - (char) 1), const_zero = (char) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wconversion"
+#endif
+ const char neg_one = (char) -1, const_zero = (char) 0;
+#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
+#pragma GCC diagnostic pop
+#endif
const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_Check(x))) {
diff --git a/c_corr.pyx b/c_corr.pyx
index 0e67e22..bd61720 100755
--- a/c_corr.pyx
+++ b/c_corr.pyx
@@ -7,7 +7,6 @@ ctypedef fused npType1:
short
int
long
- long long
float
double
@@ -15,11 +14,11 @@ ctypedef fused npType2:
short
int
long
- long long
@cython.boundscheck(False)
@cython.wraparound(False)
+@cython.embedsignature(True)
def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus):
total = taus.shape[1]
n_pair = taus.shape[0]
@@ -38,34 +37,48 @@ def c_corr_at(npType1[:,::1] cc, npType2[::1, :] taus):
@cython.boundscheck(False)
@cython.wraparound(False)
-def c_corr_all(npType1[:,::1] cc, npType2 max_tdoa, npType2 base_tdoa):
+@cython.embedsignature(True)
+cpdef c_corr_all(cc, npType2 max_tdoa, npType2 base_tdoa):
+ cdef float[:,::1] cc_mem = cc.astype(np.float32)
cdef double corr_val = 0.0
- taus = np.zeros(cc.shape[0], int)
- out_taus = np.zeros(cc.shape[0], int)
- _c_corr_core(cc, taus, out_taus, corr_val, base_tdoa-1, base_tdoa, max_tdoa, cc.shape[1], cc.shape[0])
+ cdef long[::1] taus = np.zeros(cc.shape[0], int)
+ cdef long[::1] out_taus = np.zeros(cc.shape[0], int)
+ corr_val = _c_corr_core(cc_mem, taus, out_taus, corr_val, <long> base_tdoa-1, <long> base_tdoa,
+ <long> max_tdoa, <long> cc.shape[1], <long> cc.shape[0])
return np.log10(corr_val), out_taus
+cdef long moduloNeg(long a, long b):
+ if a < 0:
+ return a + b
+ else:
+ return a
+
+
@cython.boundscheck(False)
@cython.wraparound(False)
-def _c_corr_core(npType1[:,::1] cc, npType2[::1] taus, npType2[::1] out_taus, double val,
- npType2 curr_tdoa, npType2 ind_tdoa, npType2 max_tdoa, npType2 win_size, npType2 n_pair):
+@cython.profile(True)
+cdef double _c_corr_core(float[:,::1] cc, long[::1] taus, long[::1] out_taus, double val,
+ long curr_tdoa, long ind_tdoa, long max_tdoa, long win_size, long n_pair):
+ cdef int i0 = 1
+ cdef int j0 = 0
+ cdef double tmp_val = 0.0
if curr_tdoa < 0:
- cdef int i0 = 1
- cdef int j0 = 0
for i in range(ind_tdoa, n_pair):
taus[i] = taus[i0] - taus[j0]
i0 += 1
if i0 >= ind_tdoa:
j0 += 1
i0 = j0 + 1
- val = cc[0, taus[0]]
+ tmp_val = cc[0, moduloNeg(taus[0], win_size)]
for i in range(1, n_pair):
- val *= cc[i, taus[i] % win_size]
+ tmp_val *= cc[i, moduloNeg(taus[i], win_size)]
+ if val < tmp_val:
+ val = tmp_val
+ out_taus[:] = taus
return val
cdef int low = -max_tdoa
cdef int high = max_tdoa
- cdef double tmp_val = 0
for i in range(curr_tdoa+1, ind_tdoa):
if low < taus[i] - max_tdoa:
low = -max_tdoa + taus[i]
@@ -73,8 +86,40 @@ def _c_corr_core(npType1[:,::1] cc, npType2[::1] taus, npType2[::1] out_taus, do
high = max_tdoa + taus[i]
for t in range(low, high+1):
taus[curr_tdoa] = t
- tmp_val = _c_corr_core(cc, taus, out_taus, val, curr_tdoa-1, ind_tdoa, max_size, win_size, n_pair)
- if val < tmp_val:
- val = tmp_val
- out_taus[:] = taus
+ val = _c_corr_core(cc, taus, out_taus, val, curr_tdoa-1, ind_tdoa, max_tdoa, win_size, n_pair)
+ return val
+
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+@cython.profile(True)
+def _c_corr_core2(npType1[:,::1] cc, npType2[::1] taus, npType2[::1] out_taus, double val,
+ npType2 curr_tdoa, npType2 ind_tdoa, npType2 max_tdoa, npType2 win_size, npType2 n_pair):
+ cdef int i0 = 1
+ cdef int j0 = 0
+ cdef double tmp_val = 0.0
+ for i in range(ind_tdoa):
+ taus[i] = - max_tdoa - 1
+ cdef int level = 0
+ while level >= 0:
+ taus[level] += 1
+ if taus[level] > min(taus[:level]) + max_tdoa:
+ taus[level] = max(taus[:level]) - max_tdoa - 1
+ level -= 1
+ continue
+ level +=1
+ if level == ind_tdoa:
+ level -= 1
+ for i in range(ind_tdoa, n_pair):
+ taus[i] = taus[i0] - taus[j0]
+ i0 += 1
+ if i0 >= ind_tdoa:
+ j0 += 1
+ i0 = j0 + 1
+ tmp_val = cc[0, moduloNeg(taus[0], win_size)]
+ for i in range(1, n_pair):
+ tmp_val *= cc[i, moduloNeg(taus[i], win_size)]
+ if val < tmp_val:
+ val = tmp_val
+ out_taus[:] = taus
return val
\ No newline at end of file
diff --git a/cython_setup.py b/cython_setup.py
index 2b036a1..73f0fe2 100755
--- a/cython_setup.py
+++ b/cython_setup.py
@@ -2,5 +2,5 @@ from distutils.core import setup
from Cython.Build import cythonize
setup(
- ext_modules = cythonize("c_corr.pyx", annotate=True)
+ ext_modules = cythonize("c_corr.pyx", annotate=True, compiler_directives={'language_level' : "3"})
)
\ No newline at end of file
diff --git a/gsrp_smart_util.py b/gsrp_smart_util.py
new file mode 100644
index 0000000..5cd7863
--- /dev/null
+++ b/gsrp_smart_util.py
@@ -0,0 +1,143 @@
+import numpy as np
+from math import ceil
+
+
+class Operation:
+ __slots__ = 'op', 'left', 'right', 'lifetime'
+
+ def __init__(self, op, left, right, lifetime):
+ self.op = op
+ self.left = left
+ self.right = right
+ self.lifetime = lifetime
+
+ def __repr__(self):
+ return f'(op: {self.op}, l: {self.left}, r: {self.right}, lt: {self.lifetime})'
+
+ def __eq__(self, other):
+ if isinstance(other, str):
+ return self.op == other
+ elif isinstance(other, Operation):
+ return self.op == other.op and self.left == other.left and\
+ self.right == other.right and self.lifetime == other.lifetime
+ return False
+
+
+def gen_tree(size):
+ tree = [list() for _ in range(size)]
+ tree[-1].append(list(range(size)))
+ for i in range(size-2, -1, -1):
+ m_len = i + 1
+ unused = []
+ for group in tree[i+1]:
+ if len(group) > m_len:
+ tree[i].append(group[:-1].copy())
+ unused.append(group[-1])
+ else:
+ tree[i].append(group.copy())
+ for group in tree[i]:
+ le = len(group)
+ if le < m_len:
+ group.extend(unused[:m_len-le])
+ unused = unused[m_len-le:]
+ if not len(unused):
+ break
+ if len(unused):
+ for j in range(ceil(len(unused)/m_len)):
+ tree[i].append(unused[j*m_len:(j+1)*m_len])
+ return tree
+
+
+def op_tree(tree):
+ program = [list() for _ in range(len(tree))]
+ clean_list = [list() for _ in range(len(tree) + 1)]
+ program[0] = [Operation('mem', 0, group[0], len(tree)) for group in tree[0]]
+ for i in range(1, len(tree)):
+ for group in tree[i]:
+ if group[:-1] in tree[i-1]:
+ j = tree[i-1].index(group[:-1])
+ program[i-1][j].lifetime = i
+ program[i].append(Operation('mul', j, tree[0].index(group[-1:]), i))
+ else:
+ for j in range(i-1, -1, -1):
+ if group in tree[j]:
+ break
+ else:
+ raise KeyError(f'{group} not found in:\n{tree}')
+ program[i].append(Operation('mem', j, tree[j].index(group), i))
+ for i, step in enumerate(program):
+ for j, op in enumerate(step):
+ clean_list[op.lifetime].append((i, j))
+ return program, clean_list
+
+
+def dep_tdoa(tij, nind, ntot):
+ i0 = 1
+ j0 = 0
+ for i in range(nind, ntot):
+ tij[i] = tij[i0] - tij[j0]
+ i0 += 1
+ if i0 >= nind:
+ j0 += 1
+ i0 = j0 + 1
+
+
+def num_ind(i, j, nind):
+ return j*(nind-1) + i-1 - (j*(j+1))//2
+
+
+def mul(mem1, mem2, cc, t_max, id1, id2, n_ind):
+ # assume len(id2) == 1
+ idx1, idx2 = np.meshgrid(np.arange(len(mem1[0])), np.arange(len(mem2[1])))
+ idx1, idx2 = idx1.ravel(), idx2.ravel()
+ out_tij = np.concatenate((mem1[1][idx1], mem2[1][idx2]), axis=-1)
+ mask = (np.abs(out_tij[:, :-1] - out_tij[:, -1:]) <= t_max).all(-1)
+ out_tij = out_tij[mask]
+ idx1, idx2 = idx1[mask], idx2[mask]
+ out_val = mem1[0][idx1] * mem2[0][idx2]
+ tij_dep = out_tij[:, :-1] - out_tij[:, -1:]
+ tij_dep *= np.array([1 if i > id2 else -1 for i in id1])
+ ch_dep = np.array([num_ind(i, id2, n_ind) if i > id2 else num_ind(id2, i, n_ind) for i in id1]) + n_ind
+ out_val *= cc[tij_dep, ch_dep].prod(-1)
+ return out_val, out_tij
+
+
+def mask_val(mem, val):
+ mask = mem[0] >= val
+ return mem[0][mask], mem[1][mask]
+
+
+def smart_gsrp(cc, n_ind, n_tot, t_max, tree, program, clean_list):
+ memory = dict()
+ val = 0
+ tij = np.zeros(n_tot, int)
+ for i, step in enumerate(program):
+ # increase dimensions
+ for j, op in enumerate(step):
+ if op == 'mem':
+ if i == 0:
+ memory[(0, j)] = (np.concatenate((cc[-t_max:, op.right], cc[:t_max + 1, op.right])),
+ np.arange(-t_max, t_max + 1).reshape(-1, 1))
+ else:
+ memory[(i, j)] = mask_val(memory[(op.left, op.right)], val)
+ else: # op == 'mul'
+ memory[(i, j)] = mul(mask_val(memory[(i-1, op.left)], val), mask_val(memory[(0, op.right)], val),
+ cc, t_max, tree[i - 1][op.left], tree[0][op.right][0], n_ind)
+ # find potential maximum
+ for j in range(len(step)):
+ tij[tree[i][j]] = memory[(i, j)][1][np.argmax(memory[(i, j)][0])]
+ dep_tdoa(tij, n_ind, n_tot)
+ val = cc[tij, np.arange(n_tot)].prod()
+ # print('tdoa:', tij, 'val:', val, 'mem size:', (lambda x: f'{x} ({100 * x / (2 * t_max + 1) ** i}%)')(sum(len(o[0]) for o in memory.values())))
+
+ # Mem clean up
+ for p in clean_list[i]:
+ del memory[p]
+
+ return val, tij
+
+
+
+
+
+
diff --git a/gsrp_tdoa_hyperres.py b/gsrp_tdoa_hyperres.py
index 73836c1..419a754 100755
--- a/gsrp_tdoa_hyperres.py
+++ b/gsrp_tdoa_hyperres.py
@@ -10,6 +10,8 @@ from numpy.fft import rfft, irfft
import scipy.signal as sg
import soundfile as sf
import c_corr
+from gsrp_smart_util import *
+from math import ceil
from scipy.signal.windows import tukey
try:
@@ -58,6 +60,7 @@ def corr(data, pos, w_size, max_tdoa, decimate=1, mode='prepare', hyper=True):
mat[k, j - 1] = 1
v1[k] = i
v2[k] = j
+ dw_size = w_size // decimate
if mode == 'prepare':
slices = slicer(-(cc_size // 2), cc_size // 2, (num_channels - 1), 16)
tausf = []
@@ -66,10 +69,12 @@ def corr(data, pos, w_size, max_tdoa, decimate=1, mode='prepare', hyper=True):
taus2 = np.matmul(mat, taus)
tausf += [taus2[:, np.abs(taus2).max(0) <= cc_size // 2]]
tausf = np.hstack(tausf)
- dw_size = w_size // decimate
tausf %= dw_size
elif mode == 'on-the-fly':
pass
+ elif mode == 'smart':
+ tree = gen_tree(num_channels - 1)
+ program, clean_list = op_tree(tree)
else:
raise ValueError(f'Unknown mode {mode}')
@@ -94,8 +99,7 @@ def corr(data, pos, w_size, max_tdoa, decimate=1, mode='prepare', hyper=True):
der = np.zeros((num_channels - 1, num_channels - 1))
der[ind] = coef[4:]
poly_min = np.linalg.lstsq(der + der.T, -coef[1:4], rcond=None)[0] + mean
- return pipe.predict(poly_min), poly_min
-
+ return pipe.predict(poly_min[np.newaxis]).item(), poly_min
cc = np.empty((num_channel_pairs, dw_size), np.float32)
for i in trange(len(pos)):
@@ -109,7 +113,13 @@ def corr(data, pos, w_size, max_tdoa, decimate=1, mode='prepare', hyper=True):
tdoas[i, 0], index = c_corr.c_corr_at(cc, tausf)
tdoas[i, 1:] = ((tausf[:(num_channels - 1), index] + dw_size // 2) % dw_size) - dw_size // 2
elif mode == 'on-the-fly':
- tdoas[i, 0], tdoas[i, 1:] = c_corr.c_corr_all(cc, cc_size//2, num_channels - 1)
+ tdoas[i, 0], tij = c_corr.c_corr_all(cc, cc_size//2, num_channels - 1)
+ tdoas[i, 1:] = tij[:(num_channels - 1)]
+ elif mode == 'smart':
+ maxs = cc.max(1, keepdims=True)
+ cc /= maxs
+ val, tij = smart_gsrp(cc.T, num_channels - 1, num_channel_pairs, cc_size // 2, tree, program, clean_list)
+ tdoas[i, 0], tdoas[i, 1:] = np.log10(val * maxs.prod()), tij[:(num_channels - 1)]
else:
raise ValueError(f'Unknown mode {mode}')
@@ -122,9 +132,6 @@ def corr(data, pos, w_size, max_tdoa, decimate=1, mode='prepare', hyper=True):
return np.hstack((np.expand_dims(pos, -1), tdoas))
-
-
-
def main(args):
if args.erase and os.path.isfile(args.outfile):
print(f'{BColors.WARNING}{args.outfile} already exist and erase is not set {BColors.ENDC}')
@@ -218,9 +225,7 @@ if __name__ == "__main__":
parser.add_argument('infile', type=str, help='The sound file to process.')
parser.add_argument('outfile', type=str, help='The text or npy file to write results to. Each row gives the '
'position (in samples), cross-correlation product, the independent '
- 'TDOAs (in samples), and TDOAs derived from the independent ones. '
- 'For plots, the panes give the cross-correlation product, '
- 'independent TDOAS and derived TDOAs from top to bottom.')
+ 'TDOAs (in samples), and TDOAs derived from the independent ones. ')
group1 = parser.add_argument_group('Channels')
group1.add_argument('-c', '--channels', type=intlist, default=None,
@@ -258,14 +263,15 @@ if __name__ == "__main__":
'--erase is not provide, the script will exit.')
group4.add_argument('-n', '--no-hyperres', action='store_True', help='Disable the hyper resolution evalutation of '
'the TDOA')
- group4.add_argument('-M', '--mode', choices={'prepare', 'on-the-fly', 'estimate', 'auto'}, default='prepare',
+ group4.add_argument('-M', '--mode', choices={'prepare', 'on-the-fly', 'smart', 'auto'}, default='prepare',
help=f'R|How to explore the TDOA space (default: %(default)s).\n'
f'{BColors.BOLD}prepare{BColors.ENDC} precomputes all the possible TDOA pairs and then '
f'evaluate them. All the results are save in memory.\n'
f'{BColors.BOLD}on-the-fly{BColors.ENDC} compute the TDOA pairs at the same time as it '
f'compute the loss function. Only the maximum is saved. Can be slower than '
f'{BColors.BOLD}prepare{BColors.ENDC}.\n'
- f'{BColors.BOLD}estimate{BColors.ENDC} try to reduce the number of TDOA to evaluate.\n'
+ f'{BColors.BOLD}smart{BColors.ENDC} gradually increase the search space dimension, '
+ f'reducing the number of tdoa to evaluate.\n'
f'{BColors.BOLD}auto{BColors.ENDC} automatically try to pick the right method.')
args = parser.parse_args()
--
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