import pyabf import pathlib import matplotlib.pyplot as plt from scipy.signal import butter, lfilter, freqz, filtfilt from scipy import fft, ifft import pandas as pd import numpy as np import copy from collections import OrderedDict from centuri_project.utils import interim_directory, save_data_to_folder, processed_directory if __name__ == "__main__": filenames = ["train.npz", "test.npz"] nb_sweep_by_trace = 9 for filename in filenames: data_file = interim_directory / filename data = np.load(data_file, allow_pickle=True) lst_idx_sweeps = np.split(np.arange(data["signals"].shape[1]), nb_sweep_by_trace) save_data_to_folder( np.vstack([data["signal_times"][:, idxs] for idxs in lst_idx_sweeps]), np.repeat(data["sampling_rates"], nb_sweep_by_trace), np.vstack([data["signals"][:, idxs] for idxs in lst_idx_sweeps]), np.vstack([data["labels"][:, :, idxs] for idxs in lst_idx_sweeps]) if filename == "train.npz" else None, filename, processed_directory )