improve slu synchronization

.options.txt

-slu: 1
+slu: 0
 xml_filename: data/homeostasis_25nov.xml
 osc_host: 127.0.0.1
 osc_port: 1234
-asr_model: asr/mika-fred-2.cfg
+asr_model: asr/mika-fred-1.cfg

main.py

@@ -60,7 +60,10 @@ class ScriptedASR(Gtk.Window):
             found = re.search('section(\d+)\.fst$', section_fst)
             if found:
                 section_id = int(found.group(1))
-                self.slu[section_id - 1] = slu.SLU(prefix % 'dico_word.txt', prefix % 'dico_action.txt', section_fst, prefix % 'clean_tail.fst', library=library)
+                self.slu[section_id - 1] = slu.SLU(prefix % 'dico_word.txt', prefix % 'dico_action.txt', section_fst, prefix % 'clean_tail.fst', 'slu/homeostasis_25nov.action', library=library)
+        if slu_type == 0:
+            for keyword in self.xmlview.keywords:
+                keyword.add_listener(self.set_slu_history)
 
         import alternate_slu
         self.slu2 = alternate_slu.SLU(xml_filename)
@@ -124,7 +127,8 @@ class ScriptedASR(Gtk.Window):
         self.xmlview.set_section(section_id)
 
     def slu_finished(self, model, slu_output):
-        slu_output = str(slu_output)
+        #slu_output = str(slu_output)
+        #print slu_output
         self.slu_actions = model.get_actions().split()
         self.slu_output = slu_output
         print 'SLU output: "%s", actions: "%s"' % (self.slu_output, ' '.join(self.slu_actions))
@@ -133,22 +137,22 @@ class ScriptedASR(Gtk.Window):
         for action_id in range(len(self.kept_actions), len(self.slu_actions)):
             print 'NEW ACTION:', action_id, self.slu_actions[action_id]
             action = actions.parse_slu_action(self.slu_actions[action_id])
-            print action.text
             if action.text.startswith('#ENDSEQUENCE('):
                 pass
             elif action.text.startswith('#ENDSECTION('):
                 new_section = self.xmlview.get_section() + 1
                 self.confirmer.confirm('Go to section %d?' % (new_section + 1), 3, lambda: self.set_section(new_section))
             else:
-                self.xmlview.highlight(action)
                 actions.perform_action(action, False)
+        self.kept_history = self.slu_output
+        self.kept_actions = self.slu_actions
 
     def hyp_changed(self, hyp):
         #hyp = ' '.join(hyp).replace('[noise]', ' ').split()
         if len(hyp) > len(self.current_section_history):
             self.current_section_history.append('')
-            self.kept_history = self.slu_output
-            self.kept_actions = self.slu_actions
+            #self.kept_history = self.slu_output
+            #self.kept_actions = self.slu_actions
 
         words = hyp[-1].strip().replace('_', ' ').split()
         if len(words) == 0:
@@ -172,6 +176,17 @@ class ScriptedASR(Gtk.Window):
             model.process(words, self.kept_history, self.slu_finished, False)
         self.current_section_history[-1] = ' '.join(words)
 
+    def set_slu_history(self, keyword, uri, num):
+        for keyword in self.xmlview.keywords[:num + 1]:
+            keyword.highlight()
+        for keyword in self.xmlview.keywords[num + 1:]:
+            keyword.highlight(False)
+        self.kept_actions = [x.action for x in self.xmlview.keywords[:num + 1]]
+        self.kept_history = self.slu[self.current_section].get_action_history(num)
+        print 'SLU set history: history="%s", actions="%s"' % (self.kept_history, ' '.join(self.kept_actions))
+        self.slu_output = ''
+        self.slu_actions = []
+
     def hyp_changed2(self, hyp):
         section_id = self.xmlview.get_section()
         if self.slu2_last_section != section_id:

slu.py

@@ -7,7 +7,7 @@ _semaphore = None
 
 class SLU:
     #/src.new/rocio_slu -word "$prefix"_dico_word.txt -action "$prefix"_dico_action.txt -fstmodel "$prefix".fst -fstclean "$prefix"_clean_tail.fst
-    def __init__(self, word_lexicon, action_lexicon, model_fst, cleaner_fst, library='slu/src/librocio_slu.so'):
+    def __init__(self, word_lexicon, action_lexicon, model_fst, cleaner_fst, action_history, library='slu/src/librocio_slu.so'):
         global _backend, _semaphore
         if _backend == None:
             _backend = cdll.LoadLibrary(library)
@@ -45,11 +45,23 @@ class SLU:
             _backend.free.restype = None
 
             _semaphore = threading.Semaphore()
+        self.load_action_history(action_history)
         _semaphore.acquire()
         thread = threading.Thread(target=self._init_thread, args=[word_lexicon, action_lexicon, model_fst, cleaner_fst])
         thread.daemon = True
         thread.start()
 
+    def load_action_history(self, action_history):
+        self.action_history = []
+        with open(action_history) as fp:
+            for line in fp:
+                action, history = line.strip().split('\t')
+                if not('#ENDSEQUENCE' in action or '#ENDSECTION' in action):
+                    self.action_history.append([action, history])
+
+    def get_action_history(self, action_num):
+        return self.action_history[action_num][1]
+
     def _init_thread(self, word_lexicon, action_lexicon, model_fst, cleaner_fst):
         global _backend, _semaphore
         self.slu = _backend.init_slu(word_lexicon, action_lexicon, model_fst, cleaner_fst)
@@ -69,7 +81,7 @@ class SLU:
         _semaphore.acquire()
         c_output = _backend.run_slu(self.slu, c_words, len(words), -1, old_words)
         _semaphore.release()
-        output = cast(c_output, c_char_p).value
+        output = str(cast(c_output, c_char_p).value)
         _backend.free(c_output)
         GLib.idle_add(callback, self, output)
 

slu/homeostasis_25nov.action

+action(1,1,"start_scene1","uno")	uno
+action(1,1,"#ENDSEQUENCE(1)","")	uno
+action(1,1,"#ENDSECTION(1)","")	uno
+action(2,1,"open_scene2","dos")	dos
+action(2,1,"open_2A","open_system")	dos open system
+action(2,1,"#ENDSEQUENCE(1)","")	dos open system
+action(2,2,"start_system_voice","tell_me")	dos open system tell me
+action(2,2,"open_2B","open_technical_characteristics")	dos open system tell me open technical characteristics
+action(2,2,"open_2B1","read")	dos open system tell me open technical characteristics read
+action(2,2,"open_2B2","next")	dos open system tell me open technical characteristics read next
+action(2,2,"open_2B3","yes")	dos open system tell me open technical characteristics read next yes
+action(2,2,"open_2B4","read")	dos open system tell me open technical characteristics read next yes read
+action(2,2,"open_2B5","download")	dos open system tell me open technical characteristics read next yes read download
+action(2,2,"open_2C","open_the_terms_and_conditions_of_use_of_body_x_epsilon_system_three_point_zero")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero
+action(2,2,"open_2C1","accept_terms_and_conditions_of_use")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero accept terms and conditions of use
+action(2,2,"open_2C2","next")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero accept terms and conditions of use next
+action(2,2,"open_2D","install_the_new_version_of_me")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero accept terms and conditions of use next install the new version of me
+action(2,2,"#end","give_me_my_data")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero accept terms and conditions of use next install the new version of me give me my data
+action(2,2,"#ENDSEQUENCE(2)","")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero accept terms and conditions of use next install the new version of me give me my data
+action(2,2,"#ENDSECTION(2)","")	dos open system tell me open technical characteristics read next yes read download open the terms and conditions of use of body x epsilon system three point zero accept terms and conditions of use next install the new version of me give me my data
+action(3,1,"open_scene3","tres")	tres
+action(3,1,"#end","open_access_to_body_data")	tres open access to body data
+action(3,1,"#ENDSEQUENCE(1)","")	tres open access to body data
+action(3,2,"open3_A","import_body_data")	tres open access to body data import body data
+action(3,2,"open3_A1","import_organic_matter_data")	tres open access to body data import body data import organic matter data
+action(3,2,"open3_A2","import_temperature")	tres open access to body data import body data import organic matter data import temperature
+action(3,2,"open3_A3","import_time")	tres open access to body data import body data import organic matter data import temperature import time
+action(3,2,"open3_A4","import_space_data")	tres open access to body data import body data import organic matter data import temperature import time import space data
+action(3,2,"open3_A5","import_position")	tres open access to body data import body data import organic matter data import temperature import time import space data import position
+action(3,2,"open3_A6","import_body_subsystems")	tres open access to body data import body data import organic matter data import temperature import time import space data import position import body subsystems
+action(3,2,"open3_A7","import_estate")	tres open access to body data import body data import organic matter data import temperature import time import space data import position import body subsystems import estate
+action(3,2,"#end","give_me_my_data")	tres open access to body data import body data import organic matter data import temperature import time import space data import position import body subsystems import estate give me my data
+action(3,2,"#ENDSEQUENCE(2)","")	tres open access to body data import body data import organic matter data import temperature import time import space data import position import body subsystems import estate give me my data
+action(3,2,"#ENDSECTION(3)","")	tres open access to body data import body data import organic matter data import temperature import time import space data import position import body subsystems import estate give me my data
+action(4,1,"open_scene4","quatro")	quatro
+action(4,1,"#end","open_access_to_body_functions")	quatro open access to body functions
+action(4,1,"#ENDSEQUENCE(1)","")	quatro open access to body functions
+action(4,2,"open_4A","import_body_functions_space_localization")	quatro open access to body functions import body functions space localization
+action(4,2,"open_4A1","import_body_functions_sensations")	quatro open access to body functions import body functions space localization import body functions sensations
+action(4,2,"open_4A2","import_body_functions_passion")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion
+action(4,2,"open_4A3","import_body_functions_concentration")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration
+action(4,2,"open_4A4","import_body_functions_perception")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception
+action(4,2,"open_4A5","import_body_functions_formal_force")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force
+action(4,2,"open_4A6","import_body_functions_logics")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics
+action(4,2,"open_4A7","import_body_functions_imagination")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination
+action(4,2,"open_4A8","import_body_functions_effort")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort
+action(4,2,"open_4A9","import_body_functions_nervous_system")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort import body functions nervous system
+action(4,2,"open_4A10","import_body_functions_internal_network")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort import body functions nervous system import body functions internal network
+action(4,2,"#end","upload")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort import body functions nervous system import body functions internal network upload
+action(4,2,"#end","give_me_my_data")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort import body functions nervous system import body functions internal network upload give me my data
+action(4,2,"#ENDSEQUENCE(2)","")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort import body functions nervous system import body functions internal network upload
+action(4,2,"#ENDSECTION(4)","")	quatro open access to body functions import body functions space localization import body functions sensations import body functions passion import body functions concentration import body functions perception import body functions formal force import body functions logics import body functions imagination import body functions effort import body functions nervous system import body functions internal network upload
+action(5,1,"open_scene5","cinco")	cinco
+action(5,1,"#ENDSEQUENCE(1)","")	cinco
+action(5,2,"#end","import_memory")	cinco import memory
+action(5,2,"#end","give_me_my_data")	cinco import memory give me my data
+action(5,2,"stop_system_voice","silence")	cinco import memory give me my data silence
+action(5,2,"#ENDSEQUENCE(2)","")	cinco import memory
+action(5,2,"#ENDSECTION(5)","")	cinco import memory
+action(6,1,"#end","open_network")	open network
+action(6,1,"#ENDSEQUENCE(1)","")	open network
+action(6,2,"constellation","clouds")	open network clouds
+action(6,2,"constellation","beautiful")	open network beautiful
+action(6,2,"constellation","data")	open network data
+action(6,2,"amplification1","clouds")	open network clouds
+action(6,2,"constellation","rain_of_identities")	open network rain of identities
+action(6,2,"constellation","storm_of_possibilities")	open network storm of possibilities
+action(6,2,"constellation","body")	open network body
+action(6,2,"constellation","wifi")	open network wifi
+action(6,2,"constellation","search")	open network search
+action(6,2,"constellation","and_redo")	open network and redo
+action(6,2,"constellation","connection")	open network connection
+action(6,2,"constellation","connect_me_to_this_network")	open network connect me to this network
+action(6,2,"constellation","function")	open network function
+action(6,2,"constellation","looking_for")	open network looking for
+action(6,2,"amplification1","something")	open network something
+action(6,2,"constellation","must")	open network must
+action(6,2,"constellation","stay")	open network stay
+action(6,2,"amplification1","must")	open network must
+action(6,2,"constellation","exist")	open network exist
+action(6,2,"constellation","a")	open network a
+action(6,2,"constellation","thread")	open network thread
+action(6,2,"amplification2","something")	open network something
+action(6,2,"amplification1","exists")	open network exists
+action(6,2,"constellation","between_recollection_and_oblivion")	open network between recollection and oblivion
+action(6,2,"constellation","a_tension_an_echo_an_emptiness")	open network a tension an echo an emptiness
+action(6,2,"amplification3","something")	open network something
+action(6,2,"constellation","rare")	open network rare
+action(6,2,"amplification1","stays")	open network stays
+action(6,2,"constellation","through")	open network through
+action(6,2,"constellation","nothing_more_strange_than_this_exile")	open network nothing more strange than this exile
+action(6,2,"constellation","an_absolute_abyss")	open network an absolute abyss
+action(6,2,"constellation","a_creaking_of_the_bones")	open network a creaking of the bones
+action(6,2,"constellation","a_barbarian_invasion")	open network a barbarian invasion
+action(6,2,"constellation","the_carelessness_of_destinies")	open network the carelessness of destinies
+action(6,2,"constellation","wringing_out_the")	open network wringing out the
+action(6,2,"constellation","blood")	open network blood
+action(6,2,"amplification4","something")	open network something
+action(6,2,"constellation","should")	open network should
+action(6,2,"amplification2","must")	open network must
+action(6,2,"constellation","or")	open network or
+action(6,2,"constellation","not")	open network not
+action(6,2,"amplification5","something")	open network something
+action(6,2,"amplification2","stays")	open network stays
+action(6,2,"#end","try_with_functional_regulation")	open network try with functional regulation
+action(6,2,"#end","give_me_my_data")	open network give me my data
+action(6,2,"#ENDSEQUENCE(2)","")	open network try with functional regulation
+action(6,3,"constellation","possible")	open network try with functional regulation possible
+action(6,3,"amplification1","function")	open network try with functional regulation function
+action(6,3,"constellation","erase_the")	open network try with functional regulation erase the
+action(6,3,"constellation","space")	open network try with functional regulation space
+action(6,3,"constellation","important")	open network try with functional regulation important
+action(6,3,"constellation","state")	open network try with functional regulation state
+action(6,3,"constellation","geolocalization")	open network try with functional regulation geolocalization
+action(6,3,"amplification1","important")	open network try with functional regulation important
+action(6,3,"constellation","encode")	open network try with functional regulation encode
+action(6,3,"constellation","passion")	open network try with functional regulation passion
+action(6,3,"constellation","for_located")	open network try with functional regulation for located
+action(6,3,"constellation","constellation")	open network try with functional regulation constellation
+action(6,3,"constellation","center")	open network try with functional regulation center
+action(6,3,"constellation","six_six_nine")	open network try with functional regulation six six nine
+action(6,3,"amplification2","important")	open network try with functional regulation important
+action(6,3,"constellation","some")	open network try with functional regulation some
+action(6,3,"amplification1","threads")	open network try with functional regulation threads
+action(6,3,"constellation","are_broken")	open network try with functional regulation are broken
+action(6,3,"constellation","remove")	open network try with functional regulation remove
+action(6,3,"constellation","memory")	open network try with functional regulation memory
+action(6,3,"constellation","love")	open network try with functional regulation love
+action(6,3,"amplification1","love")	open network try with functional regulation love
+action(6,3,"amplification1","memory")	open network try with functional regulation memory
+action(6,3,"amplification2","love")	open network try with functional regulation love
+action(6,3,"amplification1","errors")	open network try with functional regulation errors
+action(6,3,"constellation","a_identical")	open network try with functional regulation a identical
+action(6,3,"constellation","identity")	open network try with functional regulation identity
+action(6,3,"constellation","identifier")	open network try with functional regulation identifier
+action(6,3,"constellation","where")	open network try with functional regulation where
+action(6,3,"constellation","answer")	open network try with functional regulation answer
+action(6,3,"constellation","being")	open network try with functional regulation being
+action(6,3,"constellation","boing")	open network try with functional regulation boing
+action(6,3,"constellation","boot")	open network try with functional regulation boot
+action(6,3,"constellation","reboot")	open network try with functional regulation reboot
+action(6,3,"constellation","border_of")	open network try with functional regulation border of
+action(6,3,"amplification1","body")	open network try with functional regulation body
+action(6,3,"amplification2","body")	open network try with functional regulation body
+action(6,3,"amplification1","being")	open network try with functional regulation being
+action(6,3,"constellation","begun")	open network try with functional regulation begun
+action(6,3,"constellation","begin")	open network try with functional regulation begin
+action(6,3,"constellation","win")	open network try with functional regulation win
+action(6,3,"amplification1","border_of")	open network try with functional regulation border of
+action(6,3,"amplification2","being")	open network try with functional regulation being
+action(6,3,"constellation","actions")	open network try with functional regulation actions
+action(6,3,"amplification1","search")	open network try with functional regulation search
+action(6,3,"constellation","the")	open network try with functional regulation the
+action(6,3,"amplification1","answer")	open network try with functional regulation answer
+action(6,3,"constellation","of")	open network try with functional regulation of
+action(6,3,"amplification1","the")	open network try with functional regulation the
+action(6,3,"constellation","there_is")	open network try with functional regulation there is
+action(6,3,"amplification1","there_is")	open network try with functional regulation there is
+action(6,3,"amplification6","something")	open network try with functional regulation something
+action(6,3,"amplification3","body")	open network try with functional regulation body
+action(6,3,"constellation","password")	open network try with functional regulation password
+action(6,3,"constellation","pancreas")	open network try with functional regulation pancreas
+action(6,3,"constellation","give")	open network try with functional regulation give
+action(6,3,"constellation","me")	open network try with functional regulation me
+action(6,3,"amplification1","data")	open network try with functional regulation data
+action(6,3,"amplification1","give")	open network try with functional regulation give
+action(6,3,"amplification1","me")	open network try with functional regulation me
+action(6,3,"amplification2","give")	open network try with functional regulation give
+action(6,3,"amplification2","me")	open network try with functional regulation me
+action(6,3,"constellation","you")	open network try with functional regulation you
+action(6,3,"constellation","your")	open network try with functional regulation your
+action(6,3,"amplification3","give")	open network try with functional regulation give
+action(6,3,"amplification3","me")	open network try with functional regulation me
+action(6,3,"amplification1","your")	open network try with functional regulation your
+action(6,3,"amplification2","data")	open network try with functional regulation data
+action(6,3,"amplification4","give")	open network try with functional regulation give
+action(6,3,"amplification4","me")	open network try with functional regulation me
+action(6,3,"amplification2","your")	open network try with functional regulation your
+action(6,3,"amplification5","give")	open network try with functional regulation give
+action(6,3,"amplification5","me")	open network try with functional regulation me
+action(6,3,"amplification3","your")	open network try with functional regulation your
+action(6,3,"amplification3","data")	open network try with functional regulation data
+action(6,3,"amplification1","begun")	open network try with functional regulation begun
+action(6,3,"amplification1","begin")	open network try with functional regulation begin
+action(6,3,"amplification1","wins")	open network try with functional regulation wins
+action(6,3,"amplification1","blood")	open network try with functional regulation blood
+action(6,3,"constellation","everywhere")	open network try with functional regulation everywhere
+action(6,3,"amplification6","give")	open network try with functional regulation give
+action(6,3,"amplification7","give")	open network try with functional regulation give
+action(6,3,"amplification4","your")	open network try with functional regulation your
+action(6,3,"amplification2","blood")	open network try with functional regulation blood
+action(6,3,"constellation","golden")	open network try with functional regulation golden
+action(6,3,"amplification1","golden")	open network try with functional regulation golden
+action(6,3,"amplification4","data")	open network try with functional regulation data
+action(6,3,"constellation","protein_protection_amino-acid")	open network try with functional regulation protein protection amino-acid
+action(6,3,"amplification1","where")	open network try with functional regulation where
+action(6,3,"constellation","bilar")	open network try with functional regulation bilar
+action(6,3,"constellation","violence_segment")	open network try with functional regulation violence segment
+action(6,3,"constellation","segregation")	open network try with functional regulation segregation
+action(6,3,"amplification2","memory")	open network try with functional regulation memory
+action(6,3,"amplification1","encode")	open network try with functional regulation encode
+action(6,3,"amplification2","where")	open network try with functional regulation where
+action(6,3,"amplification3","where")	open network try with functional regulation where
+action(6,3,"amplification4","body")	open network try with functional regulation body
+action(6,3,"amplification4","where")	open network try with functional regulation where
+action(6,3,"amplification5","body")	open network try with functional regulation body
+action(6,3,"amplification5","where")	open network try with functional regulation where
+action(6,3,"amplification6","where")	open network try with functional regulation where
+action(6,3,"amplification8","give")	open network try with functional regulation give
+action(6,3,"amplification5","data")	open network try with functional regulation data
+action(6,3,"amplification2","clouds")	open network try with functional regulation clouds
+action(6,3,"amplification7","something")	open network try with functional regulation something
+action(6,3,"amplification3","being")	open network try with functional regulation being
+action(6,3,"amplification7","where")	open network try with functional regulation where
+action(6,3,"amplification8","where")	open network try with functional regulation where
+action(6,3,"amplification9","give")	open network try with functional regulation give
+action(6,3,"amplification6","data")	open network try with functional regulation data
+action(6,3,"amplification2","functions")	open network try with functional regulation functions
+action(6,3,"#end","and_to_want")	open network try with functional regulation and to want
+action(6,3,"#end","give_me_my_data")	open network try with functional regulation give me my data
+action(6,3,"#ENDSEQUENCE(3)","")	open network try with functional regulation give me my data
+action(6,4,"#end","y_querer")	open network try with functional regulation give me my data y querer
+action(6,4,"#end","give_me_my_data")	open network try with functional regulation give me my data give me my data
+action(6,4,"#ENDSEQUENCE(4)","")	open network try with functional regulation give me my data y querer
+action(6,5,"#end","give_me_my_data")	open network try with functional regulation give me my data y querer give me my data
+action(6,5,"#ENDSEQUENCE(5)","")	open network try with functional regulation give me my data y querer give me my data
+action(6,5,"#ENDSECTION(6)","")	open network try with functional regulation give me my data y querer give me my data
+action(8,1,"#end","search_for_sequences_producing_significant_alignments_in_genetic_database")	search for sequences producing significant alignments in genetic database
+action(8,1,"#end","give_me_my_data")	search for sequences producing significant alignments in genetic database give me my data
+action(8,1,"#ENDSEQUENCE(1)","")	search for sequences producing significant alignments in genetic database
+action(8,2,"memorise_loop","record")	search for sequences producing significant alignments in genetic database record
+action(8,2,"#end","give_me_my_data")	search for sequences producing significant alignments in genetic database give me my data
+action(8,2,"#ENDSEQUENCE(2)","")	search for sequences producing significant alignments in genetic database give me my data
+action(8,2,"#ENDSECTION(8)","")	search for sequences producing significant alignments in genetic database give me my data

xmlview.py

@@ -86,13 +86,13 @@ class Line(Gtk.HBox):
         self.elements = elements
         self.get_style_context().add_class('text-line')
     
-    def highlight(self, active=True, scrollable=None):
-        if active:
-            self.label.get_style_context().add_class('highlighted')
-        else:
-            self.label.get_style_context().remove_class('highlighted')
-        if scrollable != None:
-            animate.scroll_to(scrollable, self)
+    #def highlight(self, active=True, scrollable=None):
+    #    if active:
+    #        self.label.get_style_context().add_class('highlighted')
+    #    else:
+    #        self.label.get_style_context().remove_class('highlighted')
+    #    if scrollable != None:
+    #        animate.scroll_to(scrollable, self)
 
 class Keyword(Gtk.Label):
     def __init__(self, text, action, lang):
@@ -103,15 +103,29 @@ class Keyword(Gtk.Label):
         self.set_markup(text + ' [<a href="%s">%s</a>] ' % (action, action))
         self.get_style_context().add_class('keyword')
         self.connect('activate-link', self.link_clicked)
+        self.listeners = []
+        self.num = 0
+
+    def highlight(self, active=True, scrollable=None):
+        if active:
+            self.get_style_context().remove_class('keyword')
+            self.get_style_context().add_class('keyword-highlighted')
+            if scrollable != None:
+                animate.scroll_to(scrollable, self)
+        else:
+            self.get_style_context().add_class('keyword')
+            self.get_style_context().remove_class('keyword-highlighted')
+
+    def add_listener(self, listener):
+        self.listeners.append(listener)
 
-    def highlight(self, scrollable=None):
-        self.get_style_context().remove_class('keyword')
-        self.get_style_context().add_class('keyword-highlighted')
-        if scrollable != None:
-            animate.scroll_to(scrollable, self)
+    def set_num(self, num):
+        self.num = num
 
     def link_clicked(self, widget, uri):
         actions.perform_action(actions.Action(uri, keyword=widget), False)
+        for listener in self.listeners:
+            listener(self, uri, self.num)
         return True
 
 class Text(Gtk.Label):
@@ -144,6 +158,7 @@ class XmlView(Gtk.ScrolledWindow):
                 for line in sequence.lines:
                     for element in line.elements:
                         if hasattr(element, 'action'):
+                            element.set_num(len(self.keywords))
                             self.keywords.append(element)
         self.last_highlighted = -1
 
@@ -172,16 +187,19 @@ class XmlView(Gtk.ScrolledWindow):
 
     def section_clicked(self, current):
         self.set_section(int(current.name) - 1)
+        for keyword in self.keywords:
+            keyword.highlight(False)
 
     def highlight(self, action):
         if hasattr(action, 'keyword'):
-            action.keyword.highlight(self)
+            action.keyword.highlight(True, self)
         else:
             i = self.last_highlighted + 1
             while i < len(self.keywords):
                 if self.keywords[i].action == action.text:
-                    self.keywords[i].highlight(self)
+                    self.keywords[i].highlight(True, self)
                     self.last_highlighted = i
+                    #print 'HIGHLIGHT:', action.text, self.last_highlighted
                     break
                 i += 1