From 277610122709c7bf3116d665dc0beb8fd7319d02 Mon Sep 17 00:00:00 2001
From: Emmanuel Bruno <emmanuel.bruno@univ-tln.fr>
Date: Wed, 19 Apr 2023 12:01:45 +0200
Subject: [PATCH] cleans up.
---
.gitconfig | 0
.gitignore | 1 +
README.md.mustache | 25 +
build.sh | 2 +
latex/.gitignore | 301 ---------
latex/test.pdf | Bin 10888 -> 0 bytes
latex/test.tex | 16 -
makeArtefacts.sh | 26 +
makeBook.ipynb | 1367 -----------------------------------------
makeBook.sh | 31 +
metadata.yml | 13 +
python/hello.py | 1 -
quickstart-book.ipynb | 252 ++++++++
quickstart-book.md | 133 ++++
quickstart.ipynb | 667 +++++++++++++++++---
run.sh | 22 +
uml/demo.puml | 7 -
17 files changed, 1071 insertions(+), 1793 deletions(-)
create mode 100644 .gitconfig
create mode 100644 README.md.mustache
create mode 100644 build.sh
delete mode 100644 latex/.gitignore
delete mode 100644 latex/test.pdf
delete mode 100644 latex/test.tex
create mode 100755 makeArtefacts.sh
delete mode 100644 makeBook.ipynb
create mode 100755 makeBook.sh
create mode 100644 metadata.yml
delete mode 100644 python/hello.py
create mode 100644 quickstart-book.ipynb
create mode 100644 quickstart-book.md
create mode 100755 run.sh
delete mode 100644 uml/demo.puml
diff --git a/.gitconfig b/.gitconfig
new file mode 100644
index 0000000..e69de29
diff --git a/.gitignore b/.gitignore
index 0bdb3ed..f6bc77e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,3 +2,4 @@
_config.yml
_build
_toc.yml
+.DS_Store
diff --git a/README.md.mustache b/README.md.mustache
new file mode 100644
index 0000000..efe58a9
--- /dev/null
+++ b/README.md.mustache
@@ -0,0 +1,25 @@
+<!---
+This file was generated from `meta.yml`, please do not edit manually.
+Follow the instructions on https://github.com/coq-community/templates to regenerate.
+--->
+# {{& fullname }}
+
+{{# action }}
+[![Docker CI][docker-action-shield]][docker-action-link]
+{{/ action }}
+
+{{# action }}
+[docker-action-shield]: https://github.com/{{ organization }}/{{ shortname }}/workflows/Docker%20CI/badge.svg?branch={{branch}}{{^branch}}develop{{/branch}}
+[docker-action-link]: https://github.com/{{ organization }}/{{ shortname }}/actions?query=workflow:"CI"
+{{/ action }}
+
+{{& description }}
+
+{{# license }}
+- License: [{{& fullname }}]({{ file }}{{^ file }}LICENSE{{/ file }})
+{{/ license }}
+
+{{& build }}{{^ build }}## Building and installation instructions
+
+
+{{& documentation }}
diff --git a/build.sh b/build.sh
new file mode 100644
index 0000000..f34af6d
--- /dev/null
+++ b/build.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+docker build --progress=plain -t brunoe/${PWD##*/}:$(git rev-parse --abbrev-ref HEAD) .
diff --git a/latex/.gitignore b/latex/.gitignore
deleted file mode 100644
index e964244..0000000
--- a/latex/.gitignore
+++ /dev/null
@@ -1,301 +0,0 @@
-## Core latex/pdflatex auxiliary files:
-*.aux
-*.lof
-*.log
-*.lot
-*.fls
-*.out
-*.toc
-*.fmt
-*.fot
-*.cb
-*.cb2
-.*.lb
-
-## Intermediate documents:
-*.dvi
-*.xdv
-*-converted-to.*
-# these rules might exclude image files for figures etc.
-# *.ps
-# *.eps
-# *.pdf
-
-## Generated if empty string is given at "Please type another file name for output:"
-.pdf
-
-## Bibliography auxiliary files (bibtex/biblatex/biber):
-*.bbl
-*.bcf
-*.blg
-*-blx.aux
-*-blx.bib
-*.run.xml
-
-## Build tool auxiliary files:
-*.fdb_latexmk
-*.synctex
-*.synctex(busy)
-*.synctex.gz
-*.synctex.gz(busy)
-*.pdfsync
-
-## Build tool directories for auxiliary files
-# latexrun
-latex.out/
-
-## Auxiliary and intermediate files from other packages:
-# algorithms
-*.alg
-*.loa
-
-# achemso
-acs-*.bib
-
-# amsthm
-*.thm
-
-# beamer
-*.nav
-*.pre
-*.snm
-*.vrb
-
-# changes
-*.soc
-
-# comment
-*.cut
-
-# cprotect
-*.cpt
-
-# elsarticle (documentclass of Elsevier journals)
-*.spl
-
-# endnotes
-*.ent
-
-# fixme
-*.lox
-
-# feynmf/feynmp
-*.mf
-*.mp
-*.t[1-9]
-*.t[1-9][0-9]
-*.tfm
-
-#(r)(e)ledmac/(r)(e)ledpar
-*.end
-*.?end
-*.[1-9]
-*.[1-9][0-9]
-*.[1-9][0-9][0-9]
-*.[1-9]R
-*.[1-9][0-9]R
-*.[1-9][0-9][0-9]R
-*.eledsec[1-9]
-*.eledsec[1-9]R
-*.eledsec[1-9][0-9]
-*.eledsec[1-9][0-9]R
-*.eledsec[1-9][0-9][0-9]
-*.eledsec[1-9][0-9][0-9]R
-
-# glossaries
-*.acn
-*.acr
-*.glg
-*.glo
-*.gls
-*.glsdefs
-*.lzo
-*.lzs
-*.slg
-*.slo
-*.sls
-
-# uncomment this for glossaries-extra (will ignore makeindex's style files!)
-# *.ist
-
-# gnuplot
-*.gnuplot
-*.table
-
-# gnuplottex
-*-gnuplottex-*
-
-# gregoriotex
-*.gaux
-*.glog
-*.gtex
-
-# htlatex
-*.4ct
-*.4tc
-*.idv
-*.lg
-*.trc
-*.xref
-
-# hyperref
-*.brf
-
-# knitr
-*-concordance.tex
-# TODO Uncomment the next line if you use knitr and want to ignore its generated tikz files
-# *.tikz
-*-tikzDictionary
-
-# listings
-*.lol
-
-# luatexja-ruby
-*.ltjruby
-
-# makeidx
-*.idx
-*.ilg
-*.ind
-
-# minitoc
-*.maf
-*.mlf
-*.mlt
-*.mtc[0-9]*
-*.slf[0-9]*
-*.slt[0-9]*
-*.stc[0-9]*
-
-# minted
-_minted*
-*.pyg
-
-# morewrites
-*.mw
-
-# newpax
-*.newpax
-
-# nomencl
-*.nlg
-*.nlo
-*.nls
-
-# pax
-*.pax
-
-# pdfpcnotes
-*.pdfpc
-
-# sagetex
-*.sagetex.sage
-*.sagetex.py
-*.sagetex.scmd
-
-# scrwfile
-*.wrt
-
-# svg
-svg-inkscape/
-
-# sympy
-*.sout
-*.sympy
-sympy-plots-for-*.tex/
-
-# pdfcomment
-*.upa
-*.upb
-
-# pythontex
-*.pytxcode
-pythontex-files-*/
-
-# tcolorbox
-*.listing
-
-# thmtools
-*.loe
-
-# TikZ & PGF
-*.dpth
-*.md5
-*.auxlock
-
-# titletoc
-*.ptc
-
-# todonotes
-*.tdo
-
-# vhistory
-*.hst
-*.ver
-
-# easy-todo
-*.lod
-
-# xcolor
-*.xcp
-
-# xmpincl
-*.xmpi
-
-# xindy
-*.xdy
-
-# xypic precompiled matrices and outlines
-*.xyc
-*.xyd
-
-# endfloat
-*.ttt
-*.fff
-
-# Latexian
-TSWLatexianTemp*
-
-## Editors:
-# WinEdt
-*.bak
-*.sav
-
-# Texpad
-.texpadtmp
-
-# LyX
-*.lyx~
-
-# Kile
-*.backup
-
-# gummi
-.*.swp
-
-# KBibTeX
-*~[0-9]*
-
-# TeXnicCenter
-*.tps
-
-# auto folder when using emacs and auctex
-./auto/*
-*.el
-
-# expex forward references with \gathertags
-*-tags.tex
-
-# standalone packages
-*.sta
-
-# Makeindex log files
-*.lpz
-
-# xwatermark package
-*.xwm
-
-# REVTeX puts footnotes in the bibliography by default, unless the nofootinbib
-# option is specified. Footnotes are the stored in a file with suffix Notes.bib.
-# Uncomment the next line to have this generated file ignored.
-#*Notes.bib
diff --git a/latex/test.pdf b/latex/test.pdf
deleted file mode 100644
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diff --git a/latex/test.tex b/latex/test.tex
deleted file mode 100644
index 84fa7c1..0000000
--- a/latex/test.tex
+++ /dev/null
@@ -1,16 +0,0 @@
-\documentclass{article}
-
-\title{My first document}
-\date{2023-03-24}
-\author{John Doe}
-
-\begin{document}
- \maketitle
-
- \section{Introduction}
- Hello World!
-
- \section{Conclusion}
- It's cool.
-
-\end{document}
\ No newline at end of file
diff --git a/makeArtefacts.sh b/makeArtefacts.sh
new file mode 100755
index 0000000..0f108ad
--- /dev/null
+++ b/makeArtefacts.sh
@@ -0,0 +1,26 @@
+#!/usr/bin/env bash
+
+WORK_DIR="${HOME}/JUPYTER_WORK_DIR"
+
+IMAGE_REPO=brunoe
+IMAGE_NAME=jupyter-base
+IMAGE_TAG=develop
+
+OUTPUT_DIR="/home/jovyan/work/nbartefacts/${PWD##*/}"
+
+
+docker run --rm \
+ --name ${IMAGE_NAME}-book-${PWD##*/} \
+ --volume ${PWD}:/home/jovyan/notebooks/ \
+ --volume ${WORK_DIR}:/home/jovyan/work/ \
+ --env NB_UID=$UID \
+ --env OUTPUT_DIR=$OUTPUT_DIR \
+ ${IMAGE_REPO}/${IMAGE_NAME}:${IMAGE_TAG} \
+ sh -c 'cd /home/jovyan/notebooks/ && \
+ mkdir -p $OUTPUT_DIR && \
+ jupyter nbconvert --to notebook --execute --inplace *.ipynb
+ for format in html pdf slides; do
+ jupyter nbconvert --output $OUTPUT_DIR --to $format *.ipynb;
+ done'
+# --user root \
+# --volume /var/run/docker.sock:/var/run/docker.sock \
diff --git a/makeBook.ipynb b/makeBook.ipynb
deleted file mode 100644
index 80094c9..0000000
--- a/makeBook.ipynb
+++ /dev/null
@@ -1,1367 +0,0 @@
-{
- "cells": [
- {
- "cell_type": "markdown",
- "id": "5db5c32d-9814-406a-97a3-28e40b6e1cb9",
- "metadata": {},
- "source": [
- "## Pdf Book for notebook"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 3,
- "id": "4839b0f3-e551-4592-86fd-6aa35425fea3",
- "metadata": {
- "tags": [
- "remove-cell",
- "remove-output"
- ]
- },
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "\n",
- "\u001b[92m===============================================================================\u001b[0m\n",
- "\n",
- "Your _build directory has been emptied except for .jupyter_cache\n",
- "\n",
- "\u001b[92m===============================================================================\u001b[0m\n",
- "\n",
- "Running Jupyter-Book v0.15.1\n",
- "Source Folder: /home/jovyan/work/jupyter-base\n",
- "Config Path: /home/jovyan/work/jupyter-base/_config.yml\n",
- "Output Path: /home/jovyan/work/jupyter-base/_build/html\n",
- "\u001b[01mRunning Sphinx v5.0.2\u001b[39;49;00m\n",
- "\u001b[01mmaking output directory... \u001b[39;49;00mdone\n",
- "[etoc] Changing master_doc to 'quickstart'\n",
- "\u001b[01mmyst v0.18.1:\u001b[39;49;00m MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=['colon_fence', 'dollarmath', 'linkify', 'substitution', 'tasklist'], disable_syntax=[], all_links_external=False, url_schemes=['mailto', 'http', 'https'], ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')\n",
- "\u001b[01mmyst-nb v0.17.1:\u001b[39;49;00m NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=[], execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=True, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)\n",
- "Using jupyter-cache at: /home/jovyan/work/jupyter-base/_build/.jupyter_cache\n",
- "\u001b[01mbuilding [mo]: \u001b[39;49;00mtargets for 0 po files that are out of date\n",
- "\u001b[01mbuilding [html]: \u001b[39;49;00mtargets for 2 source files that are out of date\n",
- "\u001b[01mupdating environment: \u001b[39;49;00m[new config] 2 added, 0 changed, 0 removed\n",
- "/home/jovyan/work/jupyter-base/makeBook.ipynb: Executing notebook using local CWD [mystnb] \n",
- "/home/jovyan/work/jupyter-base/quickstart.ipynb: Executing notebook using local CWD [mystnb] \n",
- "Writing output for /home/jovyan/work/jupyter-base/7b6f30fc-a008-424b-ada3-c340a262bd8c.uml to 7b6f30fc-a008-424b-ada3-c340a262bd8c.svg\n",
- "/home/jovyan/work/jupyter-base/quickstart.ipynb: Executed notebook in 2.54 seconds [mystnb]\n",
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- "\u001b[91m/home/jovyan/work/jupyter-base/makeBook.ipynb:10002: WARNING: Document headings start at H2, not H1 [myst.header]\u001b[39;49;00m\n",
- "\u001b[91m/home/jovyan/work/jupyter-base/makeBook.ipynb: WARNING: Notebook exception traceback saved in: /home/jovyan/work/jupyter-base/_build/html/reports/makeBook.err.log [mystnb.exec]\u001b[39;49;00m\n"
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- "\u001b[01mchecking consistency... \u001b[39;49;00mdone\n",
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- "\u001b[01mwriting output... \u001b[39;49;00m[100%] \u001b[32mquickstart\u001b[39;49;00m \n",
- "\u001b[01mgenerating indices... \u001b[39;49;00mgenindex done\n",
- "\u001b[01mwriting additional pages... \u001b[39;49;00msearch done\n",
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- "\u001b[01mdumping search index in English (code: en)... \u001b[39;49;00mdone\n",
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- "[etoc] missing index.html written as redirect to 'quickstart.html'\n",
- "\u001b[01mbuild succeeded, 4 warnings.\u001b[39;49;00m\n",
- "\n",
- "The HTML pages are in _build/html.\n",
- "\n",
- "\u001b[92m===============================================================================\u001b[0m\n",
- "\n",
- "Finished generating HTML for book.\n",
- "Your book's HTML pages are here:\n",
- " _build/html/\n",
- "You can look at your book by opening this file in a browser:\n",
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- "\u001b[92m===============================================================================\u001b[0m\n",
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- "\u001b[01mRunning Sphinx v5.0.2\u001b[39;49;00m\n",
- "\u001b[01mmaking output directory... \u001b[39;49;00mdone\n",
- "[etoc] Changing master_doc to 'quickstart'\n",
- "\u001b[01mloading pickled environment... \u001b[39;49;00mdone\n",
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- "\u001b[01mmyst-nb v0.17.1:\u001b[39;49;00m NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=[], execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=True, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)\n",
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- "\u001b[01mwriting additional files... \u001b[39;49;00mdone\n",
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- "\u001b[01mdumping object inventory... \u001b[39;49;00mdone\n",
- "[etoc] missing index.html written as redirect to 'quickstart.html'\n",
- "\u001b[01mbuild succeeded.\u001b[39;49;00m\n",
- "\n",
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- "Running Jupyter-Book v0.15.1\n",
- "Source Folder: /home/jovyan/work/jupyter-base\n",
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- "\u001b[01mmaking output directory... \u001b[39;49;00mdone\n",
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- "\u001b[01mloading pickled environment... \u001b[39;49;00mdone\n",
- "\u001b[01mmyst v0.18.1:\u001b[39;49;00m MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=['colon_fence', 'dollarmath', 'linkify', 'substitution', 'tasklist'], disable_syntax=[], all_links_external=False, url_schemes=['mailto', 'http', 'https'], ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')\n",
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- "\u001b[01mwriting... \u001b[39;49;00mdone\n",
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- "done\n",
- "\u001b[01mbuild succeeded.\u001b[39;49;00m\n",
- "\n",
- "The LaTeX files are in _build/latex.\n",
- "Run 'make' in that directory to run these through (pdf)latex\n",
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- "Finished generating latex for book...\n",
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- "(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def\n",
- "(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)\n",
- "(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)\n",
- "(./sphinxmessages.sty)\n",
- "(/usr/share/texlive/texmf-dist/tex/xelatex/ucharclasses/ucharclasses.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty))\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/unicode-math/unicode-math.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/unicode-math/unicode-math-xetex.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/base/fix-cm.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/unicode-math/unicode-math-table.tex)))\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc-greekbasic.def)\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/hyperref/psdextra.def)\n",
- "Writing index file python.idx\n",
- "(./python.aux)\n",
- "\n",
- "Package pgfplots Warning: running in backwards compatibility mode (unsuitable t\n",
- "ick labels; missing features). Consider writing \\pgfplotsset{compat=1.18} into \n",
- "your preamble.\n",
- " on input line 93.\n",
- "\n",
- "*geometry* driver: auto-detecting\n",
- "*geometry* detected driver: xetex\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)\n",
- "(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))\n",
- "(./python.out) (./python.out)\n",
- "(/usr/share/texlive/texmf-dist/tex/generic/stringenc/se-ascii-print.def)\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)\n",
- "(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1] [2]\n",
- "(./python.toc) [1] [2] [1] (./python.ind) [2] (./python.aux) )\n",
- "Output written on python.pdf (6 pages).\n",
- "Transcript written on python.log.\n"
- ]
- },
- {
- "name": "stderr",
- "output_type": "stream",
- "text": [
- "Latexmk: Index file 'python.idx' was written\n",
- "Latexmk: Log file says output to 'python.pdf'\n"
- ]
- },
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "Latexmk: Examining 'python.log'\n",
- "=== TeX engine is 'XeTeX'\n",
- "Latexmk: All targets (python.pdf) are up-to-date\n",
- "\n",
- "\u001b[92m===============================================================================\u001b[0m\n",
- "\n",
- "A PDF of your book can be found at:\n",
- " /home/jovyan/work/jupyter-base/_build/latex\n",
- "\n",
- "\n",
- "\u001b[92m===============================================================================\u001b[0m\n",
- "\n"
- ]
- }
- ],
- "source": [
- "%%bash \n",
- "jupyter-book clean .\n",
- "for builder in html singlehtml pdflatex; do \n",
- " jupyter-book build --builder $builder .\n",
- "done"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "id": "2a5c3932-5d0d-4cfd-bbf8-62c8bfc12a93",
- "metadata": {},
- "outputs": [],
- "source": []
- }
- ],
- "metadata": {
- "kernelspec": {
- "display_name": "Python 3 (ipykernel)",
- "language": "python",
- "name": "python3"
- },
- "language_info": {
- "codemirror_mode": {
- "name": "ipython",
- "version": 3
- },
- "file_extension": ".py",
- "mimetype": "text/x-python",
- "name": "python",
- "nbconvert_exporter": "python",
- "pygments_lexer": "ipython3",
- "version": "3.10.9"
- }
- },
- "nbformat": 4,
- "nbformat_minor": 5
-}
diff --git a/makeBook.sh b/makeBook.sh
new file mode 100755
index 0000000..eb1fdb2
--- /dev/null
+++ b/makeBook.sh
@@ -0,0 +1,31 @@
+#!/usr/bin/env bash
+
+WORK_DIR="${HOME}/JUPYTER_WORK_DIR"
+
+IMAGE_REPO=brunoe
+IMAGE_NAME=jupyter-base
+IMAGE_TAG=develop
+
+OUTPUT_DIR="/home/jovyan/work/nbartefacts/${PWD##*/}/book/"
+
+docker run --rm \
+ --name ${IMAGE_NAME}-book-${PWD##*/} \
+ --volume ${PWD}:/home/jovyan/notebooks/ \
+ --volume ${WORK_DIR}:/home/jovyan/work/ \
+ --env OUTPUT_DIR=$OUTPUT_DIR \
+ --env NB_UID=$UID \
+ ${IMAGE_REPO}/${IMAGE_NAME}:${IMAGE_TAG} \
+ sh -c 'mkdir -p $OUTPUT_DIR && \
+ cd /home/jovyan/notebooks/ && \
+ jupyter-book clean $OUTPUT_DIR && \
+ for builder in html singlehtml pdflatex; do \
+ jupyter-book build \
+ --path-output $OUTPUT_DIR \
+ --toc /home/jovyan/notebooks/book/_toc.yml \
+ --config /home/jovyan/notebooks/book/_config.yml \
+ --builder $builder \
+ .
+ done'
+
+# --user root \
+# --volume /var/run/docker.sock:/var/run/docker.sock \
diff --git a/metadata.yml b/metadata.yml
new file mode 100644
index 0000000..69efe94
--- /dev/null
+++ b/metadata.yml
@@ -0,0 +1,13 @@
+---
+ fullname: Quickstart notebook for Jupyter Base Image
+
+ branch: develop
+
+ description: |-
+ A simple notebook to present the basic usage of https://github.com/ebpro/jupyter-base/
+
+ build: |-
+ ## Building and installation instructions
+
+ documentation: |-
+ ## Documentation
diff --git a/python/hello.py b/python/hello.py
deleted file mode 100644
index 895cffb..0000000
--- a/python/hello.py
+++ /dev/null
@@ -1 +0,0 @@
-print("hello python in jupyer vscode.")
\ No newline at end of file
diff --git a/quickstart-book.ipynb b/quickstart-book.ipynb
new file mode 100644
index 0000000..2a62b57
--- /dev/null
+++ b/quickstart-book.ipynb
@@ -0,0 +1,252 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "id": "a0074533-2d1c-489e-be74-12cdbdaecbb3",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "# A Book from Base\n",
+ "\n",
+ "## Introduction\n",
+ "\n",
+ "Il est aussi possible d'écrire des livres jupyter book donc à contenu dynamique avec une syntaxe étendue de markdown : <https://jupyterbook.org/en/stable/reference/cheatsheet.html>"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "4f5cce20-c342-4b79-848b-3b221ddc115b",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "## Blocs\n",
+ "\n",
+ "Avec des citations :\n",
+ "\n",
+ "> this is a nice book. \n",
+ "\n",
+ "```{epigraph}\n",
+ "Real cool book.\n",
+ "-- John Doe\n",
+ "```\n",
+ "\n",
+ "A footnote[^mylabel]: My footnote text."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "dee7f519-0067-4d5a-b137-41a44ed9ab2a",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "des blocs\n",
+ "\n",
+ "```{note}\n",
+ "Here is a note (not working in slides).\n",
+ "```\n",
+ "\n",
+ "```{warning} Avertissement\n",
+ "C'est un outil addictif.\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "5f5177f8-db62-4ee6-9436-8617f8471a23",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "## Tables\n",
+ "\n",
+ "Des tables et figures plus avancées comme {numref}`t_ex-table-01` qui est un exemple de table avec référence. \n",
+ "\n",
+ "```{list-table} Table title\n",
+ ":name: t_ex-table-01\n",
+ ":header-rows: 1\n",
+ "\n",
+ "* - Col1\n",
+ " - Col2\n",
+ "* - Row1 under Col1\n",
+ " - Row1 under Col2\n",
+ "* - Row2 under Col1\n",
+ " - Row2 under Col2\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "63044cb9-5756-4e1e-b462-ed6dd6af6a8a",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "## Math\n",
+ "\n",
+ "Ou des Mathématiques \n",
+ "\n",
+ "soit en ligne dans le texte ($z=\\sqrt{x^2+y^2}$).\n",
+ "\n",
+ "mais avec des références dans les équations :\n",
+ "\n",
+ "$$\n",
+ "a^2 + b^2 = c^2\n",
+ "$$(eqn:pyth)\n",
+ "\n",
+ "Pythagore cf. {eq}`eqn:pyth`"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "a6fc252d-ddb4-48d4-8534-f87eaf199f7e",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "mais aussi des environnements LaTeX comme `align`\n",
+ "\n",
+ "\\begin{align}\n",
+ "a_{11}& =b_{11}&\n",
+ " a_{12}& =b_{12}\\\\\n",
+ "a_{21}& =b_{21}&\n",
+ " a_{22}& =b_{22}+c_{22}\n",
+ "\\end{align}"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "8fd894e3-529d-4d49-a2e8-164e6234e111",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "## Code\n",
+ "\n",
+ "Il est possible de mettre du code dans le texte : \n",
+ "\n",
+ "en blocs :\n",
+ "\n",
+ "```python\n",
+ "note = \"Python\"\n",
+ "print(node)\n",
+ "```\n",
+ "\n",
+ "```java\n",
+ "String note = \"Java\";\n",
+ "System.out.println(node);\n",
+ "```\n",
+ "\n",
+ "ou en ligne : {python}` for i in range(1,5)` "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "id": "1a915546-c484-4ed4-81c1-07473db6bcc9",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "'here is some text!'"
+ ]
+ },
+ "metadata": {
+ "scrapbook": {
+ "mime_prefix": "",
+ "name": "glued_text"
+ }
+ },
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/plain": [
+ "45"
+ ]
+ },
+ "metadata": {
+ "scrapbook": {
+ "mime_prefix": "",
+ "name": "ss_sum"
+ }
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "from myst_nb import glue\n",
+ "my_variable = \"here is some text!\"\n",
+ "sum=0\n",
+ "for i in range(1,10):\n",
+ " sum+=i\n",
+ "glue(\"glued_text\", my_variable)\n",
+ "glue(\"ss_sum\", sum)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "f66fe296-75e2-456b-939c-ff3b23e5ef99",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "Here is an example of how to glue text: {glue:}`glued_text` and numbers : {glue:}`ss_sum`"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "2daae2ee-33c0-47e8-b89c-4178d8335b58",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "```{uml}\n",
+ "Alice -> Bob: Hi!\n",
+ "Alice <- Bob: How are you?\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "1c87b47f-c025-4a27-b95c-aa194ff20ac0",
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.10.10"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/quickstart-book.md b/quickstart-book.md
new file mode 100644
index 0000000..1c01f39
--- /dev/null
+++ b/quickstart-book.md
@@ -0,0 +1,133 @@
+---
+jupytext:
+ text_representation:
+ extension: .md
+ format_name: myst
+ format_version: 0.13
+ jupytext_version: 1.14.5
+kernelspec:
+ display_name: Python 3 (ipykernel)
+ language: python
+ name: python3
+---
+
+
+# A Book from Base
+
+## Introduction
+
+Il est aussi possible d'écrire des livres jupyter book donc à contenu dynamique avec une syntaxe étendue de markdown : <https://jupyterbook.org/en/stable/reference/cheatsheet.html>
+
+## Blocs
+
+Avec des citations :
+
+> this is a nice book.v
+
+```{epigraph}
+Real cool book.
+
+-- John Doe
+```
+
+A footnote[^mylabel]: My footnote text.
+
+des blocs
+
+```{note}
+Here is a note (not working in slides).
+```
+
+```{warning} Avertissement
+C'est un outil addictif.
+```
+
++++ {"user_expressions": []}
+
+## Tables
+
+Des tables et figures plus avancées comme {numref}`t_ex-table-01` qui est un exemple de table avec référence.
+
+```{list-table} Table title
+:name: t_ex-table-01
+:header-rows: 1
+
+* - Col1
+ - Col2
+* - Row1 under Col1
+ - Row1 under Col2
+* - Row2 under Col1
+ - Row2 under Col2
+```
+
++++ {"user_expressions": []}
+
+## Math
+
+Ou des Mathématiques
+
+soit en ligne dans le texte ($z=\sqrt{x^2+y^2}$).
+
+mais avec des références dans les équations :
+
+$$
+a^2 + b^2 = c^2
+$$(eqn:pyth)
+
+Pythagore cf. {eq}`eqn:pyth`
+
++++ {"user_expressions": []}
+
+mais aussi des environnements LaTeX comme `align`
+
+\begin{align}
+a_{11}& =b_{11}&
+ a_{12}& =b_{12}\\
+a_{21}& =b_{21}&
+ a_{22}& =b_{22}+c_{22}
+\end{align}
+
++++ {"user_expressions": []}
+
+## Code
+
+Il est possible de mettre du code dans le texte :
+
+en blocs :
+
+```python
+note = "Python"
+print(node)
+```
+
+```java
+String note = "Java";
+System.out.println(node);
+```
+
+ou en ligne : {python}`for i in range(1,5)`
+
+```{code-cell} ipython3
+from myst_nb import glue
+my_variable = "here is some text!"
+sum=0
+for i in range(1,10):
+ sum+=i
+glue("glued_text", my_variable)
+glue("ss_sum", sum)
+```
+
++++ {"user_expressions": []}
+
+Here is an example of how to glue text: {glue:}`glued_text` and numbers : {glue:}`ss_sum`
+
++++ {"user_expressions": []}
+
+```{uml}
+Alice -> Bob: Hi!
+Alice <- Bob: How are you?
+```
+
+```{code-cell} ipython3
+
+```
diff --git a/quickstart.ipynb b/quickstart.ipynb
index 7fb7878..fd142d9 100644
--- a/quickstart.ipynb
+++ b/quickstart.ipynb
@@ -2,30 +2,87 @@
"cells": [
{
"cell_type": "markdown",
- "id": "baeb31ec-ca39-49d1-9d43-cad4808c53be",
+ "id": "b41e54f0-4b20-45dd-85cb-5f02b24a4fb4",
"metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
"tags": [],
"user_expressions": []
},
"source": [
- "# Quickstart for Jupyter base notebook"
+ "# Quickstart for Jupyter-Base Notebook\n",
+ "\n",
+ "Un environnement de travail basé sur Jupyter [jupyter/minimal-notebook](https://hub.docker.com/r/jupyter/minimal-notebook/tags).\n",
+ " cf. <https://github.com/ebpro/jupyter-base> \n",
+ "\n",
+ " * Dans des notebooks \n",
+ " * Programmation Python\n",
+ " * Utilisation d'un shell Linux\n",
+ " * Intégration de graphiques (PlantUML)\n",
+ " * Dans un IDE embarqué (VSCode)\n",
+ " * Edition de documents LaTeX\n",
+ " * Développement logiciel classique"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "3c6f1e58-f4ce-4164-8f73-70f9a6de2bab",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "L'organisation est très simple : \n",
+ " * un seul utilisateur `jovyan`\n",
+ " * les notebooks se trouvent dans `/home/jovyan/notebooks`\n",
+ " * l'espace de travail dans `/home/jovyan/work`\n",
+ "\n",
+ "Ces répertoires peuvent être préremplis, remplis dynamiquement (Git) ou montés depuis un environement persistant."
]
},
{
"cell_type": "markdown",
"id": "33102a08-870e-41de-89f3-261229b0cf8b",
"metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
"user_expressions": []
},
"source": [
- "## Python"
+ "## Python\n",
+ "\n",
+ "Comme dans tous les notebooks Jupyter les cellules Python partagent le même interprète."
]
},
{
"cell_type": "code",
"execution_count": 1,
- "id": "69f6863b-6547-4e0e-9c8c-62664db684c0",
+ "id": "b68ddb85-4702-448f-8565-9b40f9aa841c",
"metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
+ "tags": []
+ },
+ "outputs": [],
+ "source": [
+ "text=\"hello\""
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "id": "e0e97d7f-0723-472e-aee5-ec91de4d45dd",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
"tags": []
},
"outputs": [
@@ -33,23 +90,37 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "Hello\n"
+ "5\n",
+ "4\n",
+ "3\n",
+ "2\n",
+ "1\n",
+ "HELLO\n"
]
}
],
"source": [
- "text=\"Hello\"\n",
- "print(text)"
+ "for i in range(5,0,-1):\n",
+ " print(i)\n",
+ "print(text.upper())"
]
},
{
"cell_type": "markdown",
- "id": "642a4b7b-42f8-48da-8f17-f6920e45a9ec",
+ "id": "97a363a2-20c7-4e16-a997-5adcb2e3aef8",
"metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
"user_expressions": []
},
"source": [
- "## Bash"
+ "## Bash\n",
+ "\n",
+ "Des commandes spéciales (magics) en ligne (`%`) ou par cellule sont disponibles (`%%`). \n",
+ "\n",
+ "i.e `%%bash` pour exécuter des commandes dans un shell Bash."
]
},
{
@@ -57,6 +128,9 @@
"execution_count": 3,
"id": "b9832d2a-df8d-484f-a783-126e57e9353a",
"metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
"tags": []
},
"outputs": [
@@ -64,30 +138,275 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "Linux b891c201ed3e 5.15.49-linuxkit #1 SMP PREEMPT Tue Sep 13 07:51:32 UTC 2022 aarch64 aarch64 aarch64 GNU/Linux\n"
+ "2023-04-04 16:40:15\n",
+ "Linux 36b718fc8a80 5.15.82-0-virt #1-Alpine SMP Mon, 12 Dec 2022 09:15:17 +0000 aarch64 aarch64 aarch64 GNU/Linux\n"
]
}
],
"source": [
"%%bash\n",
+ "date +\"%Y-%m-%d %H:%M:%S\"\n",
"uname -a"
]
},
+ {
+ "cell_type": "markdown",
+ "id": "a06fc2c6-94f6-447f-b54b-a4eebe0886c7",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "## Conda\n",
+ "\n",
+ "Les environnements conda sont supportés et peuvent persistants (`/home/jovyan/work/my-conda-envs`). "
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "990b4e9d-35a5-4e84-bd3d-354f20c9f9cb",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "L'utilisation de conda est possible et si un noyau jupyter est installé dans un environnement (`ipykernel` pour Python), il est possible d'utiliser comme noyau d'un notebook.\n",
+ "\n",
+ "Les environnements \"personnels\" sont stockés dans `/home/jovyan/work/my-conda-envs` et peuvent donc être persistants. "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "id": "7a473f2c-5f2e-4921-9b2b-63a00e8a04d2",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
+ "tags": [
+ "hide-output"
+ ]
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Collecting package metadata (current_repodata.json): ...working... done\n",
+ "Solving environment: ...working... done\n",
+ "\n",
+ "## Package Plan ##\n",
+ "\n",
+ " environment location: /home/jovyan/work/my-conda-envs/hello-test\n",
+ "\n",
+ " added / updated specs:\n",
+ " - ipykernel\n",
+ " - python=3.10\n",
+ "\n",
+ "\n",
+ "The following NEW packages will be INSTALLED:\n",
+ "\n",
+ " _openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu \n",
+ " asttokens conda-forge/noarch::asttokens-2.2.1-pyhd8ed1ab_0 \n",
+ " backcall conda-forge/noarch::backcall-0.2.0-pyh9f0ad1d_0 \n",
+ " backports conda-forge/noarch::backports-1.0-pyhd8ed1ab_3 \n",
+ " backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0 \n",
+ " bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-hf897c2e_4 \n",
+ " ca-certificates conda-forge/linux-aarch64::ca-certificates-2022.12.7-h4fd8a4c_0 \n",
+ " comm conda-forge/noarch::comm-0.1.3-pyhd8ed1ab_0 \n",
+ " debugpy conda-forge/linux-aarch64::debugpy-1.6.6-py310hbc44c02_0 \n",
+ " decorator conda-forge/noarch::decorator-5.1.1-pyhd8ed1ab_0 \n",
+ " executing conda-forge/noarch::executing-1.2.0-pyhd8ed1ab_0 \n",
+ " importlib-metadata conda-forge/noarch::importlib-metadata-6.1.0-pyha770c72_0 \n",
+ " importlib_metadata conda-forge/noarch::importlib_metadata-6.1.0-hd8ed1ab_0 \n",
+ " ipykernel conda-forge/noarch::ipykernel-6.22.0-pyh210e3f2_0 \n",
+ " ipython conda-forge/noarch::ipython-8.12.0-pyh41d4057_0 \n",
+ " jedi conda-forge/noarch::jedi-0.18.2-pyhd8ed1ab_0 \n",
+ " jupyter_client conda-forge/noarch::jupyter_client-8.1.0-pyhd8ed1ab_0 \n",
+ " jupyter_core conda-forge/linux-aarch64::jupyter_core-5.3.0-py310h4c7bcd0_0 \n",
+ " ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-h2d8c526_0 \n",
+ " libffi conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5 \n",
+ " libgcc-ng conda-forge/linux-aarch64::libgcc-ng-12.2.0-h607ecd0_19 \n",
+ " libgomp conda-forge/linux-aarch64::libgomp-12.2.0-h607ecd0_19 \n",
+ " libnsl conda-forge/linux-aarch64::libnsl-2.0.0-hf897c2e_0 \n",
+ " libsodium conda-forge/linux-aarch64::libsodium-1.0.18-hb9de7d4_1 \n",
+ " libsqlite conda-forge/linux-aarch64::libsqlite-3.40.0-hf9034f9_0 \n",
+ " libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-12.2.0-hc13a102_19 \n",
+ " libuuid conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0 \n",
+ " libzlib conda-forge/linux-aarch64::libzlib-1.2.13-h4e544f5_4 \n",
+ " matplotlib-inline conda-forge/noarch::matplotlib-inline-0.1.6-pyhd8ed1ab_0 \n",
+ " ncurses conda-forge/linux-aarch64::ncurses-6.3-headf329_1 \n",
+ " nest-asyncio conda-forge/noarch::nest-asyncio-1.5.6-pyhd8ed1ab_0 \n",
+ " openssl conda-forge/linux-aarch64::openssl-3.1.0-hb4cce97_0 \n",
+ " packaging conda-forge/noarch::packaging-23.0-pyhd8ed1ab_0 \n",
+ " parso conda-forge/noarch::parso-0.8.3-pyhd8ed1ab_0 \n",
+ " pexpect conda-forge/noarch::pexpect-4.8.0-pyh1a96a4e_2 \n",
+ " pickleshare conda-forge/noarch::pickleshare-0.7.5-py_1003 \n",
+ " pip conda-forge/noarch::pip-23.0.1-pyhd8ed1ab_0 \n",
+ " platformdirs conda-forge/noarch::platformdirs-3.2.0-pyhd8ed1ab_0 \n",
+ " prompt-toolkit conda-forge/noarch::prompt-toolkit-3.0.38-pyha770c72_0 \n",
+ " prompt_toolkit conda-forge/noarch::prompt_toolkit-3.0.38-hd8ed1ab_0 \n",
+ " psutil conda-forge/linux-aarch64::psutil-5.9.4-py310h761cc84_0 \n",
+ " ptyprocess conda-forge/noarch::ptyprocess-0.7.0-pyhd3deb0d_0 \n",
+ " pure_eval conda-forge/noarch::pure_eval-0.2.2-pyhd8ed1ab_0 \n",
+ " pygments conda-forge/noarch::pygments-2.14.0-pyhd8ed1ab_0 \n",
+ " python conda-forge/linux-aarch64::python-3.10.10-ha43d526_0_cpython \n",
+ " python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 \n",
+ " python_abi conda-forge/linux-aarch64::python_abi-3.10-3_cp310 \n",
+ " pyzmq conda-forge/linux-aarch64::pyzmq-25.0.2-py310h1438264_0 \n",
+ " readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1 \n",
+ " setuptools conda-forge/noarch::setuptools-67.6.1-pyhd8ed1ab_0 \n",
+ " six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 \n",
+ " stack_data conda-forge/noarch::stack_data-0.6.2-pyhd8ed1ab_0 \n",
+ " tk conda-forge/linux-aarch64::tk-8.6.12-hd8af866_0 \n",
+ " tornado conda-forge/linux-aarch64::tornado-6.2-py310hdc54845_1 \n",
+ " traitlets conda-forge/noarch::traitlets-5.9.0-pyhd8ed1ab_0 \n",
+ " typing-extensions conda-forge/noarch::typing-extensions-4.5.0-hd8ed1ab_0 \n",
+ " typing_extensions conda-forge/noarch::typing_extensions-4.5.0-pyha770c72_0 \n",
+ " tzdata conda-forge/noarch::tzdata-2023c-h71feb2d_0 \n",
+ " wcwidth conda-forge/noarch::wcwidth-0.2.6-pyhd8ed1ab_0 \n",
+ " wheel conda-forge/noarch::wheel-0.40.0-pyhd8ed1ab_0 \n",
+ " xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0 \n",
+ " zeromq conda-forge/linux-aarch64::zeromq-4.3.4-h01db608_1 \n",
+ " zipp conda-forge/noarch::zipp-3.15.0-pyhd8ed1ab_0 \n",
+ "\n",
+ "\n",
+ "Preparing transaction: ...working... done\n",
+ "Verifying transaction: ...working... done\n",
+ "Executing transaction: ...working... done\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "conda create --yes --quiet \\\n",
+ " --name hello-test \\\n",
+ " python=3.10 \\\n",
+ " ipykernel"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "209370a5-031e-47c2-ba16-e318bd5b38eb",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "L'environnement `hello-test` est maintenant utilisable dans un shell ou comme noyau d'un notebook (cf. \"new launcher\")."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "id": "48e5ad3b-bfa0-4e6a-ac23-77a70729abd5",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Python 3.10.10\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "source activate hello-test\n",
+ "python --version"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 17,
+ "id": "1f5b27e6-6efd-4e4b-8047-c1156aed0894",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Python 3.10.10\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "python --version"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "id": "f231e2f9-db6e-4d47-a4b7-f7894f685e7a",
+ "metadata": {
+ "execution": {
+ "iopub.execute_input": "2023-03-31T18:34:24.259086Z",
+ "iopub.status.busy": "2023-03-31T18:34:24.258983Z",
+ "iopub.status.idle": "2023-03-31T18:34:24.260946Z",
+ "shell.execute_reply": "2023-03-31T18:34:24.260566Z"
+ },
+ "slideshow": {
+ "slide_type": "subslide"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 19:56:21) [GCC 11.3.0]\n"
+ ]
+ }
+ ],
+ "source": [
+ "import sys\n",
+ "\n",
+ "print(sys.version)"
+ ]
+ },
{
"cell_type": "markdown",
"id": "f54bc696-6f58-416f-971e-6e7f7b9daa28",
"metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
"user_expressions": []
},
"source": [
- "## Git"
+ "## Git\n",
+ "\n",
+ "Disponible :\n",
+ " * depuis l'interface pour les commandes et la comparaison de notebooks\n",
+ " * classiquement en ligne de commande (`.ssh` dans `~/work`)."
]
},
{
"cell_type": "code",
- "execution_count": 4,
+ "execution_count": 18,
"id": "7f996bc4-5ad6-4b29-884f-2fa243275467",
"metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
"tags": []
},
"outputs": [
@@ -104,21 +423,236 @@
"git --version"
]
},
+ {
+ "cell_type": "code",
+ "execution_count": 20,
+ "id": "b95f99c2-c8c8-45a7-9d5a-9b9e8a229b6e",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "fatal: destination path '/home/jovyan/work/github/ebpro/sample-python' already exists and is not an empty directory.\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Processing /home/jovyan/work/github/ebpro/sample-python\n",
+ " Preparing metadata (setup.py): started\n",
+ " Preparing metadata (setup.py): finished with status 'done'\n",
+ "Building wheels for collected packages: sample-python\n",
+ " Building wheel for sample-python (setup.py): started\n",
+ " Building wheel for sample-python (setup.py): finished with status 'done'\n",
+ " Created wheel for sample-python: filename=sample_python-0.0.1-py3-none-any.whl size=2624 sha256=112542c79ada498e2dc4a6f3855926d710f0017355aeb2428f85d4ee93ed948e\n",
+ " Stored in directory: /home/jovyan/work/var/cache/buildkit/pip/wheels/fb/0f/29/7f3d2969175c3d9e9bf1ea9c7d948f78a74876e3447c5bfe55\n",
+ "Successfully built sample-python\n",
+ "Installing collected packages: sample-python\n",
+ " Attempting uninstall: sample-python\n",
+ " Found existing installation: sample-python 0.0.1\n",
+ " Uninstalling sample-python-0.0.1:\n",
+ " Successfully uninstalled sample-python-0.0.1\n",
+ "Successfully installed sample-python-0.0.1\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "git clone https://github.com/ebpro/sample-python.git \\\n",
+ " /home/jovyan/work/github/ebpro/sample-python\n",
+ "\n",
+ "cd /home/jovyan/work/github/ebpro/sample-python\n",
+ "python -m pip install ."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 21,
+ "id": "c08fc2a0-8689-402c-9c93-c9dc4dd0c2b2",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Hello World!\n"
+ ]
+ }
+ ],
+ "source": [
+ "import hello.helloworld\n",
+ "\n",
+ "hello.helloworld.hello()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "0cf14caa-6cad-4ba1-88d3-f83f84668d08",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "Comme la mise à jour de code source fourni aux étudiants peut être complexe surtout s'ils ont fait des modifications, l'outil [gitpuller](https://github.com/jupyterhub/nbgitpuller) est proposé pour régler la plupart des conflits avec des a priori raisonnables. "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 22,
+ "id": "12c8da58-bd22-4f80-a4a2-ec46ccc3c77e",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "$ git fetch\n",
+ "\n",
+ "$ git reset --mixed\n",
+ "\n",
+ "$ git -c user.email=nbgitpuller@nbgitpuller.link -c user.name=nbgitpuller merge -Xours origin/develop\n",
+ "\n",
+ "Already up to date.\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "gitpuller https://github.com/ebpro/sample-python.git develop /home/jovyan/work/github/ebpro/sample-python"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "ffe9aea7-3cce-480c-931a-f9215af74710",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "## VSCode\n",
+ "\n",
+ "L'IDE Visual Studio Code ([vscode](https://code.visualstudio.com/)) est fourni avec quelques extensions de base. Il est accessible par le launcher et depuis les liens markdown.\n",
+ "\n",
+ "Par exemple, il est possible d'éditer et d'exécuter le clone local du projet Python précédent [/home/jovyan/work/github/ebpro/sample-python](/code-server/?folder=/home/jovyan/work/github/ebpro/sample-python).\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "619fb07b-e9b7-4eef-a4e8-8ce844533148",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "## LateX \n",
+ "\n",
+ "La distribution complète [TexLive](https://www.tug.org/texlive/) est fournie.\n",
+ "\n",
+ "Il est donc possible de compiler des documents :"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 25,
+ "id": "cb4317ba-c23f-484b-bebb-c1a24d2290bb",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ },
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "$ git fetch\n",
+ "\n",
+ "$ git reset --mixed\n",
+ "\n",
+ "$ git -c user.email=nbgitpuller@nbgitpuller.link -c user.name=nbgitpuller merge -Xours origin/develop\n",
+ "\n",
+ "Already up to date.\n",
+ "\n",
+ "Rc files read:\n",
+ " /etc/LatexMk\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "gitpuller https://github.com/ebpro/sample-latex.git \\\n",
+ " develop /home/jovyan/work/github/ebpro/sample-latex && \\\n",
+ "cd /home/jovyan/work/github/ebpro/sample-latex && \\\n",
+ "\n",
+ "latexmk -xelatex -quiet sample.tex 2>&1 > /tmp/latex_build.log"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "ff4640dd-8abe-4cf7-9504-fe275b2ef98b",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "et d'utiliser vscode pour l'édition : [/home/jovyan/notebooks/latex](/code-server/?folder=/home/jovyan/work/github/ebpro/sample-latex)"
+ ]
+ },
{
"cell_type": "markdown",
"id": "5e04c9ae-3445-455e-99ed-071d1b57abb5",
"metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ },
+ "tags": [],
"user_expressions": []
},
"source": [
- "## UML"
+ "## Diagrammes\n",
+ "\n",
+ "L'intégration de diagrammes dont ceux d'UML est possible avec [PlantUML](https://plantuml.com/fr/)."
]
},
{
"cell_type": "code",
- "execution_count": 5,
+ "execution_count": 26,
"id": "f6847b3c-b14e-4176-bd4f-db400e82b691",
"metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
"tags": [
"remove-cell"
]
@@ -130,11 +664,15 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 28,
"id": "ed7da4ef-1e2a-444f-9622-a037dcb720b4",
"metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ },
"tags": [
- "remove-input"
+ "remove-input",
+ "hide-input"
]
},
"outputs": [
@@ -165,7 +703,7 @@
"<IPython.core.display.SVG object>"
]
},
- "execution_count": 6,
+ "execution_count": 28,
"metadata": {},
"output_type": "execute_result"
}
@@ -184,97 +722,24 @@
},
{
"cell_type": "markdown",
- "id": "800287e2-b904-40be-b20f-f6d572395b7f",
- "metadata": {
- "user_expressions": []
- },
- "source": [
- "## Extended markdown"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "35b7e483-e14e-4e54-a25b-38dced0f380f",
- "metadata": {
- "user_expressions": []
- },
- "source": [
- "<https://jupyterbook.org/en/stable/reference/cheatsheet.html>"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "f0fe93fd-92dd-4590-be09-279adbb3fbae",
- "metadata": {
- "tags": [],
- "user_expressions": []
- },
- "source": [
- "```{note}\n",
- "Here is a note\n",
- "```"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "b4c65d37-2a33-4983-b0f5-984da15f2f9f",
+ "id": "3f62d203-4868-4cc8-8905-74d5b0dd9d81",
"metadata": {
"user_expressions": []
},
"source": [
- "```{warning} This is my warning\n",
- "bla\n",
+ "```{uml}\n",
+ "Alice -> Bob: Hi!\n",
+ "Alice <- Bob: How are you?\n",
"```"
]
},
{
- "cell_type": "markdown",
- "id": "c6b8bdb8-e501-4557-be51-bc2130dcba23",
- "metadata": {
- "user_expressions": []
- },
- "source": [
- "$$\n",
- "a^2 + b^2 = c^2\n",
- "$$(eqn:pyth)\n",
- "\n",
- "Pythagore cf. {eq}`eqn:pyth`"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "c60ddcfe-cbcc-4eec-a355-7621885e7ca9",
- "metadata": {
- "user_expressions": []
- },
- "source": [
- "\\begin{align}\n",
- "a_{11}& =b_{11}&\n",
- " a_{12}& =b_{12}\\\\\n",
- "a_{21}& =b_{21}&\n",
- " a_{22}& =b_{22}+c_{22}\n",
- "\\end{align}"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "e388047e-b8a6-4854-a7c3-f63824b5a81d",
- "metadata": {
- "user_expressions": []
- },
- "source": [
- "```{list-table} Table title\n",
- ":header-rows: 1\n",
- ":name: label-to-reference\n",
- "\n",
- "* - Col1\n",
- " - Col2\n",
- "* - Row1 under Col1\n",
- " - Row1 under Col2\n",
- "* - Row2 under Col1\n",
- " - Row2 under Col2\n",
- "```"
- ]
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "a98992d7-39fc-4c49-891e-fae1b3f136b9",
+ "metadata": {},
+ "outputs": [],
+ "source": []
}
],
"metadata": {
@@ -293,7 +758,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.10.9"
+ "version": "3.10.10"
}
},
"nbformat": 4,
diff --git a/run.sh b/run.sh
new file mode 100755
index 0000000..70f42e2
--- /dev/null
+++ b/run.sh
@@ -0,0 +1,22 @@
+#!/usr/bin/env bash
+
+WORK_DIR="${HOME}/JUPYTER_WORK_DIR"
+
+IMAGE_REPO=brunoe
+IMAGE_NAME=jupyter-base
+IMAGE_TAG=develop
+
+
+docker run --rm \
+ --name ${IMAGE_NAME}-${PWD##*/} \
+ --user root \
+ --volume ${PWD}:/home/jovyan/notebooks/ \
+ --volume ${WORK_DIR}:/home/jovyan/works/ \
+ --publish 8888:8888 \
+ --env NB_UID=$UID \
+ ${IMAGE_REPO}/${IMAGE_NAME}:${IMAGE_TAG} \
+ start-notebook.sh --notebook-dir=/home/jovyan/notebooks/
+
+
+
+# --volume /var/run/docker.sock:/var/run/docker.sock \
diff --git a/uml/demo.puml b/uml/demo.puml
deleted file mode 100644
index 1a53daf..0000000
--- a/uml/demo.puml
+++ /dev/null
@@ -1,7 +0,0 @@
-@startuml
-Alice -> Bob: Authentication Request
-Bob --> Alice: Authentication Response
-
-Alice -> Bob: Another authentication Request
-Alice <-- Bob: Another authentication Response
-@enduml
\ No newline at end of file
--
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