From 02c40e516e1a7a8c3a5d93a36ed22b5bf4c9ffd5 Mon Sep 17 00:00:00 2001
From: Emmanuel Bruno <emmanuel.bruno@univ-tln.fr>
Date: Mon, 27 Mar 2023 23:32:30 +0200
Subject: [PATCH] initial release.
---
.gitignore | 4 +
Dockerfile | 5 +
latex/.gitignore | 301 ++++++++++
latex/test.pdf | Bin 0 -> 10888 bytes
latex/test.tex | 16 +
makeBook.ipynb | 1367 ++++++++++++++++++++++++++++++++++++++++++++++
python/hello.py | 1 +
quickstart.ipynb | 301 ++++++++++
uml/demo.puml | 7 +
9 files changed, 2002 insertions(+)
create mode 100644 .gitignore
create mode 100644 Dockerfile
create mode 100644 latex/.gitignore
create mode 100644 latex/test.pdf
create mode 100644 latex/test.tex
create mode 100644 makeBook.ipynb
create mode 100644 python/hello.py
create mode 100644 quickstart.ipynb
create mode 100644 uml/demo.puml
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..0bdb3ed
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,4 @@
+.ipynb_checkpoints
+_config.yml
+_build
+_toc.yml
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..5d651d1
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,5 @@
+FROM brunoe/jupyter-base:develop
+COPY . ${HOME}/work
+USER root
+RUN chown -R ${NB_UID} ${HOME}
+USER ${NB_USER}
diff --git a/latex/.gitignore b/latex/.gitignore
new file mode 100644
index 0000000..e964244
--- /dev/null
+++ b/latex/.gitignore
@@ -0,0 +1,301 @@
+## Core latex/pdflatex auxiliary files:
+*.aux
+*.lof
+*.log
+*.lot
+*.fls
+*.out
+*.toc
+*.fmt
+*.fot
+*.cb
+*.cb2
+.*.lb
+
+## Intermediate documents:
+*.dvi
+*.xdv
+*-converted-to.*
+# these rules might exclude image files for figures etc.
+# *.ps
+# *.eps
+# *.pdf
+
+## Generated if empty string is given at "Please type another file name for output:"
+.pdf
+
+## Bibliography auxiliary files (bibtex/biblatex/biber):
+*.bbl
+*.bcf
+*.blg
+*-blx.aux
+*-blx.bib
+*.run.xml
+
+## Build tool auxiliary files:
+*.fdb_latexmk
+*.synctex
+*.synctex(busy)
+*.synctex.gz
+*.synctex.gz(busy)
+*.pdfsync
+
+## Build tool directories for auxiliary files
+# latexrun
+latex.out/
+
+## Auxiliary and intermediate files from other packages:
+# algorithms
+*.alg
+*.loa
+
+# achemso
+acs-*.bib
+
+# amsthm
+*.thm
+
+# beamer
+*.nav
+*.pre
+*.snm
+*.vrb
+
+# changes
+*.soc
+
+# comment
+*.cut
+
+# cprotect
+*.cpt
+
+# elsarticle (documentclass of Elsevier journals)
+*.spl
+
+# endnotes
+*.ent
+
+# fixme
+*.lox
+
+# feynmf/feynmp
+*.mf
+*.mp
+*.t[1-9]
+*.t[1-9][0-9]
+*.tfm
+
+#(r)(e)ledmac/(r)(e)ledpar
+*.end
+*.?end
+*.[1-9]
+*.[1-9][0-9]
+*.[1-9][0-9][0-9]
+*.[1-9]R
+*.[1-9][0-9]R
+*.[1-9][0-9][0-9]R
+*.eledsec[1-9]
+*.eledsec[1-9]R
+*.eledsec[1-9][0-9]
+*.eledsec[1-9][0-9]R
+*.eledsec[1-9][0-9][0-9]
+*.eledsec[1-9][0-9][0-9]R
+
+# glossaries
+*.acn
+*.acr
+*.glg
+*.glo
+*.gls
+*.glsdefs
+*.lzo
+*.lzs
+*.slg
+*.slo
+*.sls
+
+# uncomment this for glossaries-extra (will ignore makeindex's style files!)
+# *.ist
+
+# gnuplot
+*.gnuplot
+*.table
+
+# gnuplottex
+*-gnuplottex-*
+
+# gregoriotex
+*.gaux
+*.glog
+*.gtex
+
+# htlatex
+*.4ct
+*.4tc
+*.idv
+*.lg
+*.trc
+*.xref
+
+# hyperref
+*.brf
+
+# knitr
+*-concordance.tex
+# TODO Uncomment the next line if you use knitr and want to ignore its generated tikz files
+# *.tikz
+*-tikzDictionary
+
+# listings
+*.lol
+
+# luatexja-ruby
+*.ltjruby
+
+# makeidx
+*.idx
+*.ilg
+*.ind
+
+# minitoc
+*.maf
+*.mlf
+*.mlt
+*.mtc[0-9]*
+*.slf[0-9]*
+*.slt[0-9]*
+*.stc[0-9]*
+
+# minted
+_minted*
+*.pyg
+
+# morewrites
+*.mw
+
+# newpax
+*.newpax
+
+# nomencl
+*.nlg
+*.nlo
+*.nls
+
+# pax
+*.pax
+
+# pdfpcnotes
+*.pdfpc
+
+# sagetex
+*.sagetex.sage
+*.sagetex.py
+*.sagetex.scmd
+
+# scrwfile
+*.wrt
+
+# svg
+svg-inkscape/
+
+# sympy
+*.sout
+*.sympy
+sympy-plots-for-*.tex/
+
+# pdfcomment
+*.upa
+*.upb
+
+# pythontex
+*.pytxcode
+pythontex-files-*/
+
+# tcolorbox
+*.listing
+
+# thmtools
+*.loe
+
+# TikZ & PGF
+*.dpth
+*.md5
+*.auxlock
+
+# titletoc
+*.ptc
+
+# todonotes
+*.tdo
+
+# vhistory
+*.hst
+*.ver
+
+# easy-todo
+*.lod
+
+# xcolor
+*.xcp
+
+# xmpincl
+*.xmpi
+
+# xindy
+*.xdy
+
+# xypic precompiled matrices and outlines
+*.xyc
+*.xyd
+
+# endfloat
+*.ttt
+*.fff
+
+# Latexian
+TSWLatexianTemp*
+
+## Editors:
+# WinEdt
+*.bak
+*.sav
+
+# Texpad
+.texpadtmp
+
+# LyX
+*.lyx~
+
+# Kile
+*.backup
+
+# gummi
+.*.swp
+
+# KBibTeX
+*~[0-9]*
+
+# TeXnicCenter
+*.tps
+
+# auto folder when using emacs and auctex
+./auto/*
+*.el
+
+# expex forward references with \gathertags
+*-tags.tex
+
+# standalone packages
+*.sta
+
+# Makeindex log files
+*.lpz
+
+# xwatermark package
+*.xwm
+
+# REVTeX puts footnotes in the bibliography by default, unless the nofootinbib
+# option is specified. Footnotes are the stored in a file with suffix Notes.bib.
+# Uncomment the next line to have this generated file ignored.
+#*Notes.bib
diff --git a/latex/test.pdf b/latex/test.pdf
new file mode 100644
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diff --git a/latex/test.tex b/latex/test.tex
new file mode 100644
index 0000000..84fa7c1
--- /dev/null
+++ b/latex/test.tex
@@ -0,0 +1,16 @@
+\documentclass{article}
+
+\title{My first document}
+\date{2023-03-24}
+\author{John Doe}
+
+\begin{document}
+ \maketitle
+
+ \section{Introduction}
+ Hello World!
+
+ \section{Conclusion}
+ It's cool.
+
+\end{document}
\ No newline at end of file
diff --git a/makeBook.ipynb b/makeBook.ipynb
new file mode 100644
index 0000000..80094c9
--- /dev/null
+++ b/makeBook.ipynb
@@ -0,0 +1,1367 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "id": "5db5c32d-9814-406a-97a3-28e40b6e1cb9",
+ "metadata": {},
+ "source": [
+ "## Pdf Book for notebook"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "id": "4839b0f3-e551-4592-86fd-6aa35425fea3",
+ "metadata": {
+ "tags": [
+ "remove-cell",
+ "remove-output"
+ ]
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "\n",
+ "\u001b[92m===============================================================================\u001b[0m\n",
+ "\n",
+ "Your _build directory has been emptied except for .jupyter_cache\n",
+ "\n",
+ "\u001b[92m===============================================================================\u001b[0m\n",
+ "\n",
+ "Running Jupyter-Book v0.15.1\n",
+ "Source Folder: /home/jovyan/work/jupyter-base\n",
+ "Config Path: /home/jovyan/work/jupyter-base/_config.yml\n",
+ "Output Path: /home/jovyan/work/jupyter-base/_build/html\n",
+ "\u001b[01mRunning Sphinx v5.0.2\u001b[39;49;00m\n",
+ "\u001b[01mmaking output directory... \u001b[39;49;00mdone\n",
+ "[etoc] Changing master_doc to 'quickstart'\n",
+ "\u001b[01mmyst v0.18.1:\u001b[39;49;00m MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=['colon_fence', 'dollarmath', 'linkify', 'substitution', 'tasklist'], disable_syntax=[], all_links_external=False, url_schemes=['mailto', 'http', 'https'], ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')\n",
+ "\u001b[01mmyst-nb v0.17.1:\u001b[39;49;00m NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=[], execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=True, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)\n",
+ "Using jupyter-cache at: /home/jovyan/work/jupyter-base/_build/.jupyter_cache\n",
+ "\u001b[01mbuilding [mo]: \u001b[39;49;00mtargets for 0 po files that are out of date\n",
+ "\u001b[01mbuilding [html]: \u001b[39;49;00mtargets for 2 source files that are out of date\n",
+ "\u001b[01mupdating environment: \u001b[39;49;00m[new config] 2 added, 0 changed, 0 removed\n",
+ "/home/jovyan/work/jupyter-base/makeBook.ipynb: Executing notebook using local CWD [mystnb] \n",
+ "/home/jovyan/work/jupyter-base/quickstart.ipynb: Executing notebook using local CWD [mystnb] \n",
+ "Writing output for /home/jovyan/work/jupyter-base/7b6f30fc-a008-424b-ada3-c340a262bd8c.uml to 7b6f30fc-a008-424b-ada3-c340a262bd8c.svg\n",
+ "/home/jovyan/work/jupyter-base/quickstart.ipynb: Executed notebook in 2.54 seconds [mystnb]\n",
+ "\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "\u001b[91m/home/jovyan/work/jupyter-base/makeBook.ipynb: WARNING: Executing notebook failed: CellTimeoutError [mystnb.exec]\u001b[39;49;00m\n",
+ "\u001b[91m/home/jovyan/work/jupyter-base/makeBook.ipynb:10002: WARNING: Document headings start at H2, not H1 [myst.header]\u001b[39;49;00m\n",
+ "\u001b[91m/home/jovyan/work/jupyter-base/makeBook.ipynb: WARNING: Notebook exception traceback saved in: /home/jovyan/work/jupyter-base/_build/html/reports/makeBook.err.log [mystnb.exec]\u001b[39;49;00m\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "\u001b[01mlooking for now-outdated files... \u001b[39;49;00mnone found\n",
+ "\u001b[01mpickling environment... \u001b[39;49;00mdone\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "\u001b[91m/home/jovyan/work/jupyter-base/makeBook.ipynb: WARNING: document isn't included in any toctree\u001b[39;49;00m\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "\u001b[01mchecking consistency... \u001b[39;49;00mdone\n",
+ "\u001b[01mpreparing documents... \u001b[39;49;00mdone\n",
+ "\u001b[01mwriting output... \u001b[39;49;00m[100%] \u001b[32mquickstart\u001b[39;49;00m \n",
+ "\u001b[01mgenerating indices... \u001b[39;49;00mgenindex done\n",
+ "\u001b[01mwriting additional pages... \u001b[39;49;00msearch done\n",
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+ "\u001b[01mdumping search index in English (code: en)... \u001b[39;49;00mdone\n",
+ "\u001b[01mdumping object inventory... \u001b[39;49;00mdone\n",
+ "[etoc] missing index.html written as redirect to 'quickstart.html'\n",
+ "\u001b[01mbuild succeeded, 4 warnings.\u001b[39;49;00m\n",
+ "\n",
+ "The HTML pages are in _build/html.\n",
+ "\n",
+ "\u001b[92m===============================================================================\u001b[0m\n",
+ "\n",
+ "Finished generating HTML for book.\n",
+ "Your book's HTML pages are here:\n",
+ " _build/html/\n",
+ "You can look at your book by opening this file in a browser:\n",
+ " _build/html/index.html\n",
+ "Or paste this line directly into your browser bar:\n",
+ " file:///home/jovyan/work/jupyter-base/_build/html/index.html \n",
+ "\n",
+ "\u001b[92m===============================================================================\u001b[0m\n",
+ "\n",
+ "Running Jupyter-Book v0.15.1\n",
+ "Source Folder: /home/jovyan/work/jupyter-base\n",
+ "Config Path: /home/jovyan/work/jupyter-base/_config.yml\n",
+ "Output Path: /home/jovyan/work/jupyter-base/_build/singlehtml\n",
+ "\u001b[01mRunning Sphinx v5.0.2\u001b[39;49;00m\n",
+ "\u001b[01mmaking output directory... \u001b[39;49;00mdone\n",
+ "[etoc] Changing master_doc to 'quickstart'\n",
+ "\u001b[01mloading pickled environment... \u001b[39;49;00mdone\n",
+ "\u001b[01mmyst v0.18.1:\u001b[39;49;00m MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=['colon_fence', 'dollarmath', 'linkify', 'substitution', 'tasklist'], disable_syntax=[], all_links_external=False, url_schemes=['mailto', 'http', 'https'], ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')\n",
+ "\u001b[01mmyst-nb v0.17.1:\u001b[39;49;00m NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=[], execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=True, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)\n",
+ "Using jupyter-cache at: /home/jovyan/work/jupyter-base/_build/.jupyter_cache\n",
+ "\u001b[01mbuilding [mo]: \u001b[39;49;00mtargets for 0 po files that are out of date\n",
+ "\u001b[01mbuilding [singlehtml]: \u001b[39;49;00mall documents\n",
+ "\u001b[01mupdating environment: \u001b[39;49;00m0 added, 0 changed, 0 removed\n",
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+ "\u001b[01mwriting additional files... \u001b[39;49;00mdone\n",
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+ "\u001b[01mdumping object inventory... \u001b[39;49;00mdone\n",
+ "[etoc] missing index.html written as redirect to 'quickstart.html'\n",
+ "\u001b[01mbuild succeeded.\u001b[39;49;00m\n",
+ "\n",
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+ "Running Jupyter-Book v0.15.1\n",
+ "Source Folder: /home/jovyan/work/jupyter-base\n",
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+ "\u001b[01mRunning Sphinx v5.0.2\u001b[39;49;00m\n",
+ "\u001b[01mmaking output directory... \u001b[39;49;00mdone\n",
+ "[etoc] Changing master_doc to 'quickstart'\n",
+ "\u001b[01mloading pickled environment... \u001b[39;49;00mdone\n",
+ "\u001b[01mmyst v0.18.1:\u001b[39;49;00m MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=['colon_fence', 'dollarmath', 'linkify', 'substitution', 'tasklist'], disable_syntax=[], all_links_external=False, url_schemes=['mailto', 'http', 'https'], ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')\n",
+ "\u001b[01mmyst-nb v0.17.1:\u001b[39;49;00m NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=[], execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=True, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)\n",
+ "Using jupyter-cache at: /home/jovyan/work/jupyter-base/_build/.jupyter_cache\n",
+ "\u001b[01msphinx-jupyterbook-latex v0.5.2:\u001b[39;49;00mengine='xelatex', toplevel_section='None', imgconverter='sphinx.ext.imgconverter', show_tocs='list'\n",
+ "\u001b[01mbuilding [mo]: \u001b[39;49;00mtargets for 0 po files that are out of date\n",
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+ "\u001b[01mupdating environment: \u001b[39;49;00m0 added, 0 changed, 0 removed\n",
+ "\u001b[01mlooking for now-outdated files... \u001b[39;49;00mnone found\n",
+ "\u001b[01mprocessing python.tex... \u001b[39;49;00m\u001b[32mquickstart\u001b[39;49;00m \n",
+ "resolving references...\n",
+ "done\n",
+ "\u001b[01mwriting... \u001b[39;49;00mdone\n",
+ "\u001b[01mcopying TeX support files... \u001b[39;49;00m\u001b[01mcopying TeX support files...\u001b[39;49;00m\n",
+ "done\n",
+ "\u001b[01mbuild succeeded.\u001b[39;49;00m\n",
+ "\n",
+ "The LaTeX files are in _build/latex.\n",
+ "Run 'make' in that directory to run these through (pdf)latex\n",
+ "(use `make latexpdf' here to do that automatically).\n",
+ "Finished generating latex for book...\n",
+ "Converting book latex into PDF...\n",
+ "latexmk -pdf -dvi- -ps- 'python.tex'\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "Rc files read:\n",
+ " /etc/LatexMk\n",
+ " latexmkrc\n",
+ "Latexmk: This is Latexmk, John Collins, 20 November 2021, version: 4.76.\n",
+ "Rule 'pdflatex': File changes, etc:\n",
+ " Changed files, or newly in use since previous run(s):\n",
+ " 'python.tex'\n",
+ "------------\n",
+ "Run number 1 of rule 'pdflatex'\n",
+ "------------\n",
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+ "(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))\n",
+ "(./python.out) (./python.out)\n",
+ "(/usr/share/texlive/texmf-dist/tex/generic/stringenc/se-ascii-print.def)\n",
+ "(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)\n",
+ "(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)\n",
+ "(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1] [2]\n",
+ "(./python.toc) [1] [2] [1] (./python.ind) [2] (./python.aux) )\n",
+ "Output written on python.pdf (6 pages).\n",
+ "Transcript written on python.log.\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "Latexmk: Index file 'python.idx' was written\n",
+ "Latexmk: Log file says output to 'python.pdf'\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Latexmk: Examining 'python.log'\n",
+ "=== TeX engine is 'XeTeX'\n",
+ "Latexmk: All targets (python.pdf) are up-to-date\n",
+ "\n",
+ "\u001b[92m===============================================================================\u001b[0m\n",
+ "\n",
+ "A PDF of your book can be found at:\n",
+ " /home/jovyan/work/jupyter-base/_build/latex\n",
+ "\n",
+ "\n",
+ "\u001b[92m===============================================================================\u001b[0m\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash \n",
+ "jupyter-book clean .\n",
+ "for builder in html singlehtml pdflatex; do \n",
+ " jupyter-book build --builder $builder .\n",
+ "done"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "2a5c3932-5d0d-4cfd-bbf8-62c8bfc12a93",
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.10.9"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/python/hello.py b/python/hello.py
new file mode 100644
index 0000000..895cffb
--- /dev/null
+++ b/python/hello.py
@@ -0,0 +1 @@
+print("hello python in jupyer vscode.")
\ No newline at end of file
diff --git a/quickstart.ipynb b/quickstart.ipynb
new file mode 100644
index 0000000..7fb7878
--- /dev/null
+++ b/quickstart.ipynb
@@ -0,0 +1,301 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "id": "baeb31ec-ca39-49d1-9d43-cad4808c53be",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "# Quickstart for Jupyter base notebook"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "33102a08-870e-41de-89f3-261229b0cf8b",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "## Python"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "id": "69f6863b-6547-4e0e-9c8c-62664db684c0",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Hello\n"
+ ]
+ }
+ ],
+ "source": [
+ "text=\"Hello\"\n",
+ "print(text)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "642a4b7b-42f8-48da-8f17-f6920e45a9ec",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "## Bash"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "id": "b9832d2a-df8d-484f-a783-126e57e9353a",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Linux b891c201ed3e 5.15.49-linuxkit #1 SMP PREEMPT Tue Sep 13 07:51:32 UTC 2022 aarch64 aarch64 aarch64 GNU/Linux\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash\n",
+ "uname -a"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "f54bc696-6f58-416f-971e-6e7f7b9daa28",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "## Git"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "id": "7f996bc4-5ad6-4b29-884f-2fa243275467",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "git version 2.34.1\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%bash \n",
+ "git --version"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "5e04c9ae-3445-455e-99ed-071d1b57abb5",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "## UML"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "id": "f6847b3c-b14e-4176-bd4f-db400e82b691",
+ "metadata": {
+ "tags": [
+ "remove-cell"
+ ]
+ },
+ "outputs": [],
+ "source": [
+ "import iplantuml"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "id": "ed7da4ef-1e2a-444f-9622-a037dcb720b4",
+ "metadata": {
+ "tags": [
+ "remove-input"
+ ]
+ },
+ "outputs": [
+ {
+ "data": {
+ "image/svg+xml": [
+ "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" contentScriptType=\"application/ecmascript\" contentStyleType=\"text/css\" height=\"215px\" preserveAspectRatio=\"none\" style=\"width:300px;height:215px;\" version=\"1.1\" viewBox=\"0 0 300 215\" width=\"300px\" zoomAndPan=\"magnify\"><defs><filter height=\"300%\" id=\"fn3yvorrca0j1\" width=\"300%\" x=\"-1\" y=\"-1\"><feGaussianBlur result=\"blurOut\" stdDeviation=\"2.0\"/><feColorMatrix in=\"blurOut\" result=\"blurOut2\" type=\"matrix\" values=\"0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 .4 0\"/><feOffset dx=\"4.0\" dy=\"4.0\" in=\"blurOut2\" result=\"blurOut3\"/><feBlend in=\"SourceGraphic\" in2=\"blurOut3\" mode=\"normal\"/></filter></defs><g><line style=\"stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 5.0,5.0;\" x1=\"33\" x2=\"33\" y1=\"38.2969\" y2=\"174.8281\"/><line style=\"stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 5.0,5.0;\" x1=\"270\" x2=\"270\" y1=\"38.2969\" y2=\"174.8281\"/><rect fill=\"#FEFECE\" filter=\"url(#fn3yvorrca0j1)\" height=\"30.2969\" style=\"stroke: #A80036; stroke-width: 1.5;\" width=\"46\" x=\"8\" y=\"3\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"14\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"32\" x=\"15\" y=\"22.9951\">Alice</text><rect fill=\"#FEFECE\" filter=\"url(#fn3yvorrca0j1)\" height=\"30.2969\" style=\"stroke: #A80036; stroke-width: 1.5;\" width=\"46\" x=\"8\" y=\"173.8281\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"14\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"32\" x=\"15\" y=\"193.8232\">Alice</text><rect fill=\"#FEFECE\" filter=\"url(#fn3yvorrca0j1)\" height=\"30.2969\" style=\"stroke: #A80036; stroke-width: 1.5;\" width=\"42\" x=\"247\" y=\"3\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"14\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"28\" x=\"254\" y=\"22.9951\">Bob</text><rect fill=\"#FEFECE\" filter=\"url(#fn3yvorrca0j1)\" height=\"30.2969\" style=\"stroke: #A80036; stroke-width: 1.5;\" width=\"42\" x=\"247\" y=\"173.8281\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"14\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"28\" x=\"254\" y=\"193.8232\">Bob</text><polygon fill=\"#A80036\" points=\"258,65.4297,268,69.4297,258,73.4297,262,69.4297\" style=\"stroke: #A80036; stroke-width: 1.0;\"/><line style=\"stroke: #A80036; stroke-width: 1.0;\" x1=\"33\" x2=\"264\" y1=\"69.4297\" y2=\"69.4297\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"13\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"149\" x=\"40\" y=\"64.3638\">Authentication Request</text><polygon fill=\"#A80036\" points=\"44,94.5625,34,98.5625,44,102.5625,40,98.5625\" style=\"stroke: #A80036; stroke-width: 1.0;\"/><line style=\"stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 2.0,2.0;\" x1=\"38\" x2=\"269\" y1=\"98.5625\" y2=\"98.5625\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"13\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"159\" x=\"50\" y=\"93.4966\">Authentication Response</text><polygon fill=\"#A80036\" points=\"258,123.6953,268,127.6953,258,131.6953,262,127.6953\" style=\"stroke: #A80036; stroke-width: 1.0;\"/><line style=\"stroke: #A80036; stroke-width: 1.0;\" x1=\"33\" x2=\"264\" y1=\"127.6953\" y2=\"127.6953\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"13\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"203\" x=\"40\" y=\"122.6294\">Another authentication Request</text><polygon fill=\"#A80036\" points=\"44,152.8281,34,156.8281,44,160.8281,40,156.8281\" style=\"stroke: #A80036; stroke-width: 1.0;\"/><line style=\"stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 2.0,2.0;\" x1=\"38\" x2=\"269\" y1=\"156.8281\" y2=\"156.8281\"/><text fill=\"#000000\" font-family=\"sans-serif\" font-size=\"13\" lengthAdjust=\"spacingAndGlyphs\" textLength=\"213\" x=\"50\" y=\"151.7622\">Another authentication Response</text><!--MD5=[1d6f20096108edb94adca4cbf5ef001d]\n",
+ "@startuml\n",
+ "Alice -> Bob: Authentication Request\n",
+ "Bob - -> Alice: Authentication Response\n",
+ "\n",
+ "Alice -> Bob: Another authentication Request\n",
+ "Alice <- - Bob: Another authentication Response\n",
+ "@enduml\n",
+ "\n",
+ "PlantUML version 1.2020.02(Sun Mar 01 10:22:07 UTC 2020)\n",
+ "(GPL source distribution)\n",
+ "Java Runtime: OpenJDK Runtime Environment\n",
+ "JVM: OpenJDK 64-Bit Server VM\n",
+ "Java Version: 11.0.18+10-post-Ubuntu-0ubuntu122.04\n",
+ "Operating System: Linux\n",
+ "Default Encoding: UTF-8\n",
+ "Language: en\n",
+ "Country: US\n",
+ "--></g></svg>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.SVG object>"
+ ]
+ },
+ "execution_count": 6,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%plantuml --jar\n",
+ "\n",
+ "@startuml\n",
+ "Alice -> Bob: Authentication Request\n",
+ "Bob --> Alice: Authentication Response\n",
+ "\n",
+ "Alice -> Bob: Another authentication Request\n",
+ "Alice <-- Bob: Another authentication Response\n",
+ "@enduml"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "800287e2-b904-40be-b20f-f6d572395b7f",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "## Extended markdown"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "35b7e483-e14e-4e54-a25b-38dced0f380f",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "<https://jupyterbook.org/en/stable/reference/cheatsheet.html>"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "f0fe93fd-92dd-4590-be09-279adbb3fbae",
+ "metadata": {
+ "tags": [],
+ "user_expressions": []
+ },
+ "source": [
+ "```{note}\n",
+ "Here is a note\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "b4c65d37-2a33-4983-b0f5-984da15f2f9f",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "```{warning} This is my warning\n",
+ "bla\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "c6b8bdb8-e501-4557-be51-bc2130dcba23",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "$$\n",
+ "a^2 + b^2 = c^2\n",
+ "$$(eqn:pyth)\n",
+ "\n",
+ "Pythagore cf. {eq}`eqn:pyth`"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "c60ddcfe-cbcc-4eec-a355-7621885e7ca9",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "\\begin{align}\n",
+ "a_{11}& =b_{11}&\n",
+ " a_{12}& =b_{12}\\\\\n",
+ "a_{21}& =b_{21}&\n",
+ " a_{22}& =b_{22}+c_{22}\n",
+ "\\end{align}"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "e388047e-b8a6-4854-a7c3-f63824b5a81d",
+ "metadata": {
+ "user_expressions": []
+ },
+ "source": [
+ "```{list-table} Table title\n",
+ ":header-rows: 1\n",
+ ":name: label-to-reference\n",
+ "\n",
+ "* - Col1\n",
+ " - Col2\n",
+ "* - Row1 under Col1\n",
+ " - Row1 under Col2\n",
+ "* - Row2 under Col1\n",
+ " - Row2 under Col2\n",
+ "```"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.10.9"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/uml/demo.puml b/uml/demo.puml
new file mode 100644
index 0000000..1a53daf
--- /dev/null
+++ b/uml/demo.puml
@@ -0,0 +1,7 @@
+@startuml
+Alice -> Bob: Authentication Request
+Bob --> Alice: Authentication Response
+
+Alice -> Bob: Another authentication Request
+Alice <-- Bob: Another authentication Response
+@enduml
\ No newline at end of file
--
GitLab