From a9795bb2edeb29f5d887dabc72601bc47f3485ea Mon Sep 17 00:00:00 2001
From: Emmanuel Bruno <emmanuel.bruno@univ-tln.fr>
Date: Fri, 22 Oct 2021 11:44:02 +0200
Subject: [PATCH] sets versions.
---
Dockerfile | 22 +++++-----------------
1 file changed, 5 insertions(+), 17 deletions(-)
diff --git a/Dockerfile b/Dockerfile
index 26b5d44..b8385ec 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -22,14 +22,11 @@ RUN apt-get update && apt-get install -y --no-install-recommends\
apt-get clean && rm -rf /var/lib/apt/lists/* && rm -rf /var/cache/apt
# Postgresql python library
-RUN conda install --quiet --yes psycopg2 && \
- conda install -y -c conda-forge postgresql pgspecial && \
- conda clean -tipsy && \
- fix-permissions "${CONDA_DIR}" && \
- fix-permissions "/home/${NB_USER}"
-
# SQL support for ipython and PlantUML
-RUN pip install ipython-sql iplantuml && \
+RUN conda install --quiet --yes psycopg2=2.9.1 && \
+ conda install -y -c conda-forge postgresql=13.3 pgspecial && \
+ conda clean -tipsy && \
+ pip install ipython-sql iplantuml mocodo_magic && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
@@ -39,18 +36,9 @@ ENV PGDATA=/home/jovyan/work/pgdata
COPY initDB.sh /usr/local/bin/before-notebook.d/
-RUN pip install jupyterlab_sql && \
- jupyter serverextension enable jupyterlab_sql --py --sys-prefix && \
- jupyter lab build && \
- fix-permissions "${CONDA_DIR}" && \
- fix-permissions "/home/${NB_USER}"
-
-RUN pip install mocodo_magic
-
-RUN jupyter lab --generate-config && \
+RUN ipython profile create && \
sed -i -e '/c.InteractiveShellApp.extensions = / s/= [^\]]*/= ["mocodo_magic","sql"]/' -e 's/# \(c.InteractiveShellApp.extensions\)/\1/' ~/.ipython/profile_default/ipython_config.py
-
# Switch back to jovyan to avoid accidental container runs as root
USER $NB_UID
RUN mkdir -p /home/jovyan/.ssh && ssh-keyscan -t rsa github.com > /home/jovyan/.ssh/known_hosts
--
GitLab