diff --git a/BBPs/1-BBP_detection.py b/BBPs/1-BBP_detection.py
index 5b0a9017e61e4d5a68d71a245f3aaf9365ccae2f..2f7f7f5224e4614da20dfd611aaa9a59abb0d93a 100644
--- a/BBPs/1-BBP_detection.py
+++ b/BBPs/1-BBP_detection.py
@@ -22,9 +22,9 @@ print("Importation of packages done!")
#%% Parameters
# Paths
print("\rSetting up parameters...", end="\r")
-audio_f = "/media/loic/DOLPHINFREE/Acoustique" # Path to recordings
-csv_f = "./../CSV_data" # Path to data in csv
-save_f = "./Results" # Path to results
+audio_f = "./../Audio_data" # Path to recordings
+csv_f = "./../CSV_data" # Path to data in csv
+save_f = "./Results" # Path to results
# For functions
sr = 512000 # sample rate of the recordings
diff --git a/BBPs/2-manual_verification.py b/BBPs/2-manual_verification.py
index e540a243c3b9f5e32c80b51bba1723e33fbff7a6..54134273ea6294bc27bc2dc8f24b9fa6a160f6f9 100644
--- a/BBPs/2-manual_verification.py
+++ b/BBPs/2-manual_verification.py
@@ -23,9 +23,9 @@ print("Importation of packages done!")
#%% Parameters
print("\rSetting up parameters...", end="\r")
# Paths
-audio_f = "/media/loic/DOLPHINFREE/Acoustique" # Path to recordings
-csv_f = "./../CSV_data" # Path to data in csv
-save_f = "./Results" # Path to results
+audio_f = "./../Audio_data" # Path to recordings
+csv_f = "./../CSV_data" # Path to data in csv
+save_f = "./Results" # Path to results
# For functions
sr = 512000 # sample rate of the recordings
diff --git a/Clicks/1-detection_of_clicks.py b/Clicks/1-detection_of_clicks.py
index a189c6c376a15ea72da51a07fec3871f9f9867a7..5739e8bbbd242dae1ef2c8da8b2b4100289419c8 100644
--- a/Clicks/1-detection_of_clicks.py
+++ b/Clicks/1-detection_of_clicks.py
@@ -20,9 +20,9 @@ print("Importation of packages done!")
#%% Parameters
# Paths
print("\rSetting up parameters...", end="\r")
-audio_f = "/media/loic/DOLPHINFREE/Acoustique" # Path to audio data
-csv_f = "./../CSV_data" # Path to csv data
-save_f = "./Results/peaks_02052022" # Path to save results
+audio_f = "./../Audio_data" # Path to recordings
+csv_f = "./../CSV_data" # Path to csv data
+save_f = "./Results/peaks_02052022" # Path to save results
# Audio parameters
sr = 512000 # sample rate of the recordings
diff --git a/Clicks/3-projection_3features.py b/Clicks/3-projection_3features.py
index 54df7fb4c5006eeda35f2c2537dc6684d612c31e..ad7bd6d018acf35ce2da35a94bf4142e8bcfbf63 100644
--- a/Clicks/3-projection_3features.py
+++ b/Clicks/3-projection_3features.py
@@ -24,7 +24,7 @@ print("Importation of packages done!")
#%% Parameters
print("\rSetting up parameters...", end="\r")
-audio_f = "/media/loic/DOLPHINFREE/Acoustique" # Path to audio data
+audio_f = "./../Audio_data" # Path to recordings
csv_f = "./../CSV_data" # Path to csv data
res_f = "./Results" # Path to save results
peaks_f = "peaks_02052022" # Path to save results
diff --git a/Clicks/__pycache__/ClickUtils.cpython-39.pyc b/Clicks/__pycache__/ClickUtils.cpython-39.pyc
deleted file mode 100644
index 637b1f10f4e9ed909a15627bce8f38dc038a2d95..0000000000000000000000000000000000000000
Binary files a/Clicks/__pycache__/ClickUtils.cpython-39.pyc and /dev/null differ
diff --git a/README.md b/README.md
index 5b42868ef895ad9a4da999133dc4ff5998b1ec4b..7fb42ba0b7138120cb95a947a01c6fc2ac29bedd 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,31 @@
# Scripts-DOLPHINFREE
- Scripts used for mdpi article
+A repository containing scripts and data used in *Lehnhoff et al, 2022* (in submission process).
+
+## Description
+This repository contains the files used to analyse data obtained during the <a href="https://umr-marbec.fr/en/the-projects/dolphinfree/">DOLPHINFREE project</a>. The goal was to detect and identify clicks and whisltes in audio recordings of common dolphins.
+
+"BBPs", "Clicks" and "Whisltes" folders each treat a type of signal emitted by dolphins.
+- Each folder contains numbered scripts for step-by-step execution.
+- ___Utils.py files contain the functions necessary to the execution of the other scripts
+- "Results" and other subfolders contain... results and other outputs (surprise surprise).
+
+"Stats" folder contains the files used to carry on a statistical analysis of extracted data.
+"CSV_data" folder contains the visual observations made during experiments.
+"Audio_data" folder is empty. Files cannot be made available publicly due to the presence of copyrighted elements.
+
+## Get Started
+.py files were developped using Python 3.9.7.
+If needed, you can add missing packages to your environement using:
+```bash
+$ pip install name-package
+```
+
+.matlab files can be executed in matlab or octave.
+
+## Contact
+Feel free to contact me if you have questions, tips or anything else to say. I'd really appreciate it!
+
+Loïc Lehnhoff - <loic.lehnhoff@gmail.com>
+
+## Publication
+**IN SUBMISSION PROCESS:** Lehnhoff, L.; Glotin, H.; Bernard, S.; Dabin, W.; Le Gall, Y.; Menut, E.; Meheust, E.; Peltier, H.; Pochat, A.; Pochat, K.; Rimaud, T.; Sourget, Q.; Spitz, J.; Van Canneyt, O.; Mérigot, B. *Behavioural response of common *dolphins Delphinus* delphis to a bio-inspired acoustic device for limiting fishery by-catch.* Sustainability **2022**, 1, 0
\ No newline at end of file
diff --git a/Whistles/1-Identification_of_whistles.py b/Whistles/1-Identification_of_whistles.py
index f914876f4fd700539d259585e52582f8c68885ab..766961b5269bf706069fc69b94a371884ce696b3 100644
--- a/Whistles/1-Identification_of_whistles.py
+++ b/Whistles/1-Identification_of_whistles.py
@@ -22,9 +22,9 @@ print("Importation of packages complete!")
#%% Parameters
# Paths
print("\rSetting up parameters...", end="\r")
-audio_f = "/media/loic/DOLPHINFREE/Acoustique" # Path to recordings
-csv_f = "./../CSV_data" # Path to data in csv
-save_f = "./Trajectories" # Path were
+audio_f = "./../Audio_data" # Path to recordings
+csv_f = "./../CSV_data" # Path to data in csv
+save_f = "./Trajectories" # Path were
# Audio parameters
start = 0 # start time for signal (in sec)
diff --git a/Whistles/2-get_stats_of_whistles.py b/Whistles/2-get_stats_of_whistles.py
index eded8aba9691c26053908832cebeee730cc69105..af3151cd960fe731de49e9ecd97ccbb53cefd7dd 100644
--- a/Whistles/2-get_stats_of_whistles.py
+++ b/Whistles/2-get_stats_of_whistles.py
@@ -22,9 +22,9 @@ print("Importation of packages complete!")
#%% Parameters
print("\rSetting up parameters...", end="\r")
-audio_f = "/media/loic/DOLPHINFREE/Acoustique" # Path to recordings
-csv_f = "./../CSV_data" # Path to data in csv
-save_f = "./Trajectories" # Path were
+audio_f = "./../Audio_data" # Path to recordings
+csv_f = "./../CSV_data" # Path to data in csv
+save_f = "./Trajectories" # Path were
results_f = "./Evaluation"
keep_if = 1 # minimal length of a whistle to be kept