From c501096ca5a04cafa24357ad1dbc4e1a43c7c0b2 Mon Sep 17 00:00:00 2001
From: Loic-Lenof <loic.lenof@gmail.com>
Date: Tue, 2 Aug 2022 18:18:48 +0200
Subject: [PATCH] Simplification
Simplifies the use of outputs from 'Clicks' step 3
---
Clicks/3-projection_3features.py | 17 ++++++++++++++++-
Clicks/Results.npy | Bin 0 -> 244 bytes
.../SCW1807_20200711_082400_cleanpeaks.npy | Bin 0 -> 1104 bytes
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.../SCW1807_20200711_132200_cleanpeaks.npy | Bin 0 -> 168 bytes
.../SCW1807_20200712_090300_cleanpeaks.npy | Bin 0 -> 9328 bytes
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.../SCW1807_20200713_063700_cleanpeaks.npy | Bin 0 -> 9040 bytes
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create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_055800_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_060000_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_073300_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_073400_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_073500_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_073600_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_073700_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_074000_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_074100_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210711_074200_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_085900_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_090000_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_090200_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_090500_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_090600_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_090700_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_090800_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_091100_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_091200_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_091600_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_091700_cleanpeaks.npy
create mode 100644 Clicks/Results/peaks_02052022_withou_SONARS/SCW6070_20210718_100500_cleanpeaks.npy
diff --git a/Clicks/3-projection_3features.py b/Clicks/3-projection_3features.py
index ad7bd6d..33b0927 100644
--- a/Clicks/3-projection_3features.py
+++ b/Clicks/3-projection_3features.py
@@ -180,7 +180,7 @@ green_group = np.where(rad_cc[:,0] <= 1.)[0]
red_group = np.where(rad_cc[:,1] <= 1.)[0]
black_group = np.delete(np.arange(len(rad_cc)), np.unique(np.append(green_group, red_group)))
-# # let's see the small groups on spectrograms
+# # let's see the small groups on spectrograms (comment if data not available)
# green_names = np.copy(linked_files[green_group])
# red_names = np.copy(linked_files[red_group])
# names = np.intersect1d(np.unique(red_names), np.unique(green_names))
@@ -259,6 +259,21 @@ if input("Update count of clicks and save new groups ? [Y/n]") == "Y":
# => mainly anthropogenic clicks, we exclude them and see you next script !
np.save(os.path.join(res_f, save_features, "idx_clicks_not_from_humans.npy"),
black_group)
+ # Find all previous positions
+ all_positions = np.array([], dtype=int)
+ for click_file in os.listdir(os.path.join(res_f, peaks_f)):
+ all_positions = np.append(all_positions,
+ np.load(os.path.join(res_f, peaks_f, click_file)))
+ keep_positions = np.copy(all_positions[black_group])
+ keep_linked_files = np.copy(linked_files[black_group])
+ # save the position of clicks which were not anthropogenic
+ for linked_file in np.unique(keep_linked_files):
+ np.save(os.path.join(res_f,
+ peaks_f+"_without_SONARS",
+ audio_paths[linked_file][-27:-4]+"_cleanpeaks.npy"),
+ all_positions[np.where(keep_linked_files==linked_file)[0]])
+
+
##### update count of clicks #####
curr_numbers = pd.read_csv(os.path.join(res_f, "number_of_clicks_" + version + ".csv"))
new_count = np.zeros(len(audio_paths))
diff --git a/Clicks/Results.npy b/Clicks/Results.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_085400_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_085400_cleanpeaks.npy
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new file mode 100644
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new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_114100_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_114100_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_114200_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_114200_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_114300_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_114300_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_115100_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_115100_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_115700_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200711_115700_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_090400_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_090400_cleanpeaks.npy
new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_090500_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_090500_cleanpeaks.npy
new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_090600_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_090600_cleanpeaks.npy
new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_114900_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200712_114900_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200713_063900_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200713_063900_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200713_064500_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200713_064500_cleanpeaks.npy
new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200713_075600_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200713_075600_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_082500_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_082500_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_082600_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_082600_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_085900_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_085900_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_090000_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_090000_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_100800_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_100800_cleanpeaks.npy
new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_100900_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200716_100900_cleanpeaks.npy
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new file mode 100644
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new file mode 100644
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_091800_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_091800_cleanpeaks.npy
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_094500_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_094500_cleanpeaks.npy
new file mode 100644
index 0000000000000000000000000000000000000000..153b2bf4c35696a6280892d6721c94df4ae5e08c
GIT binary patch
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_094600_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_094600_cleanpeaks.npy
new file mode 100644
index 0000000000000000000000000000000000000000..dd4587db9b21d30eab87d94e92a16dd57f26a185
GIT binary patch
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new file mode 100644
index 0000000000000000000000000000000000000000..2df99bffe51433c2e748f024323ddf8c66fc5bf0
GIT binary patch
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_094800_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_094800_cleanpeaks.npy
new file mode 100644
index 0000000000000000000000000000000000000000..7a805b065e87bd573d0c47f4326abd4a487fdaec
GIT binary patch
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_111600_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_111600_cleanpeaks.npy
new file mode 100644
index 0000000000000000000000000000000000000000..3201b77885807f19517c5f46b97fcfcc11eb5e87
GIT binary patch
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_111700_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_111700_cleanpeaks.npy
new file mode 100644
index 0000000000000000000000000000000000000000..aa4127e7b6e5dd552a393e500fa2e024f3013783
GIT binary patch
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_111800_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_111800_cleanpeaks.npy
new file mode 100644
index 0000000000000000000000000000000000000000..9479f5a1d69ba4238b7c82496ae69e696bc897d9
GIT binary patch
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diff --git a/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_112600_cleanpeaks.npy b/Clicks/Results/peaks_02052022_withou_SONARS/SCW1807_20200717_112600_cleanpeaks.npy
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new file mode 100644
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--
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