From b5b25f7bc6fd914f13740fab2b180f15f0613b79 Mon Sep 17 00:00:00 2001
From: Baptiste Bauvin <baptiste.bauvin@lis-lab.fr>
Date: Fri, 7 Feb 2020 16:14:57 +0100
Subject: [PATCH] Hotfix class selection with example_ids
---
config_files/config_test.yml | 8 ++++----
.../mono_multi_view_classifiers/utils/dataset.py | 4 ++--
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/config_files/config_test.yml b/config_files/config_test.yml
index e40bbc9e..0a541ce0 100644
--- a/config_files/config_test.yml
+++ b/config_files/config_test.yml
@@ -1,15 +1,15 @@
# The base configuration of the benchmark
Base :
log: True
- name: ["plausible", "koukou"]
+ name: ["lives_13view", "koukou"]
label: "_"
type: ".hdf5"
views:
- pathf: "../data/"
+ pathf: "/home/baptiste/Documents/Datasets/Alexis/data/"
nice: 0
random_state: 42
nb_cores: 1
- full: True
+ full: False
debug: True
add_noise: False
noise_std: 0.0
@@ -21,7 +21,7 @@ Classification:
split: 0.9
nb_folds: 2
nb_class: 2
- classes:
+ classes: ["EMF", ]
type: ["multiview", "monoview"]
algos_monoview: ["decision_tree", "adaboost", "random_forest" ]
algos_multiview: ["weighted_linear_early_fusion",]
diff --git a/multiview_platform/mono_multi_view_classifiers/utils/dataset.py b/multiview_platform/mono_multi_view_classifiers/utils/dataset.py
index e7692142..60062bf2 100644
--- a/multiview_platform/mono_multi_view_classifiers/utils/dataset.py
+++ b/multiview_platform/mono_multi_view_classifiers/utils/dataset.py
@@ -291,8 +291,8 @@ class Dataset():
new_dataset_file = h5py.File(dataset_file_path,"w")
self.dataset.copy("Metadata", new_dataset_file)
if "example_ids" in self.dataset["Metadata"].keys():
- ex_ids = new_dataset_file["Metadata"]["example_ids"]
- ex_ids[...] = np.array(self.example_ids)[example_indices].astype(np.dtype("S10"))
+ del new_dataset_file["Metadata"]["example_ids"]
+ ex_ids = new_dataset_file["Metadata"].create_dataset("example_ids", data=np.array(self.example_ids)[example_indices].astype(np.dtype("S10")))
else:
new_dataset_file["Metadata"].create_dataset("example_ids",
(len(self.example_ids), ),
--
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