diff --git a/Code/MonoMutliViewClassifiers/ExecClassif.py b/Code/MonoMutliViewClassifiers/ExecClassif.py index 54b27ba1b47815260f518a09ee8b6ea2a44d19a5..964e0351e9b092068e338a667f2628b271e7d95e 100644 --- a/Code/MonoMutliViewClassifiers/ExecClassif.py +++ b/Code/MonoMutliViewClassifiers/ExecClassif.py @@ -10,6 +10,7 @@ import time import logging from joblib import Parallel, delayed from ResultAnalysis import resultAnalysis +import itertools import numpy as np import MonoviewClassifiers @@ -21,7 +22,7 @@ parser = argparse.ArgumentParser( groupStandard = parser.add_argument_group('Standard arguments') groupStandard.add_argument('-log', action='store_true', help='Use option to activate Logging to Console') groupStandard.add_argument('--name', metavar='STRING', action='store', help='Name of Database (default: %(default)s)', - default='ModifiedMultiOmic') + default='MultiOmic') groupStandard.add_argument('--type', metavar='STRING', action='store', help='Type of database : .hdf5 or .csv', default='.hdf5') groupStandard.add_argument('--views', metavar='STRING', action='store',help='Name of the views selected for learning', @@ -43,10 +44,10 @@ groupClass.add_argument('--CL_split', metavar='FLOAT', action='store', groupClass.add_argument('--CL_nbFolds', metavar='INT', action='store', help='Number of folds in cross validation', type=int, default=5 ) groupClass.add_argument('--CL_nb_class', metavar='INT', action='store', help='Number of classes, -1 for all', type=int, - default=4) + default=2) groupClass.add_argument('--CL_classes', metavar='STRING', action='store', help='Classes used in the dataset (names of the folders) if not filled, random classes will be ' - 'selected ex. walrus:mole:leopard', default="") + 'selected ex. walrus:mole:leopard', default="jambon:poney") groupClass.add_argument('--CL_type', metavar='STRING', action='store', help='Determine whether to use Multiview, Monoview, or Benchmark, separate with : if multiple', default='Benchmark') @@ -59,7 +60,10 @@ groupClass.add_argument('--CL_algos_multiview', metavar='STRING', action='store' groupClass.add_argument('--CL_cores', metavar='INT', action='store', help='Number of cores, -1 for all', type=int, default=1) groupClass.add_argument('--CL_metrics', metavar='STRING', action='store', - help='Determine which metric to use, separate with ":" if multiple, if empty, considering all', default='') + help='Determine which metric to use, separate with ":" if multiple, if empty, considering all, ' + 'first one will be used for gridsearch', default='') +groupClass.add_argument('--CL_GS_iter', metavar='INT', action='store', + help='Determine how many Randomized grid search tests to do', type=int, default=30) groupRF = parser.add_argument_group('Random Forest arguments') groupRF.add_argument('--CL_RF_trees', metavar='STRING', action='store', help='GridSearch: Determine the trees', @@ -155,6 +159,10 @@ datasetLength = DATASET.get("Metadata").attrs["datasetLength"] NB_VIEW = DATASET.get("Metadata").attrs["nbView"] views = [str(DATASET.get("View"+str(viewIndex)).attrs["name"]) for viewIndex in range(NB_VIEW)] NB_CLASS = DATASET.get("Metadata").attrs["nbClass"] +metrics = args.CL_metrics.split(":") +if metrics == [""]: + metrics = [["accuracy_score", None]] +metric = metrics[0] logging.info("Start:\t Finding all available mono- & multiview algorithms") @@ -167,18 +175,20 @@ if args.CL_type.split(":")==["Benchmark"]: for fusionModulesName in fusionModulesNames] fusionClasses = [getattr(fusionModule, fusionModulesName+"Classifier") for fusionModulesName, fusionModule in zip(fusionModulesNames, fusionModules)] - fusionMethods = dict((fusionModulesName, [subclass.__name__ for subclass in fusionClasse.__subclasses__() ]) - for fusionModulesName, fusionClasse in zip(fusionModulesNames, fusionClasses)) + fusionMethods = dict((fusionModulesName, [name for _, name, isPackage in + pkgutil.iter_modules(["Multiview/Fusion/Methods/"+fusionModulesName+"Package"]) + if not isPackage]) + for fusionModulesName, fusionClasse in zip(fusionModulesNames, fusionClasses)) allMonoviewAlgos = [name for _, name, isPackage in pkgutil.iter_modules(['MonoviewClassifiers']) if not isPackage] fusionMonoviewClassifiers = allMonoviewAlgos allFusionAlgos = {"Methods": fusionMethods, "Classifiers": fusionMonoviewClassifiers} allMumboAlgos = [name for _, name, isPackage in - pkgutil.iter_modules(['Multiview/Mumbo/Classifiers']) - if not isPackage and not name in ["SubSampling", "ModifiedMulticlass", "Kover"]] + pkgutil.iter_modules(['Multiview/Mumbo/Classifiers']) + if not isPackage and not name in ["SubSampling", "ModifiedMulticlass", "Kover"]] allMultiviewAlgos = {"Fusion": allFusionAlgos, "Mumbo": allMumboAlgos} - benchmark = {"Monoview": allMonoviewAlgos, "Multiview" : allMultiviewAlgos} + benchmark = {"Monoview": allMonoviewAlgos, "Multiview": allMultiviewAlgos} if "Multiview" in args.CL_type.strip(":"): benchmark["Multiview"] = {} @@ -188,9 +198,9 @@ if "Multiview" in args.CL_type.strip(":"): benchmark["Multiview"]["Fusion"]= {} benchmark["Multiview"]["Fusion"]["Methods"] = dict((fusionType, []) for fusionType in args.FU_types.split(":")) if "LateFusion" in args.FU_types.split(":"): - benchmark["Multiview"]["Fusion"]["LateFusion"] = args.FU_late_methods.split(":") + benchmark["Multiview"]["Fusion"]["Methods"]["LateFusion"] = args.FU_late_methods.split(":") if "EarlyFusion" in args.FU_types.split(":"): - benchmark["Multiview"]["Fusion"]["EarlyFusion"] = args.FU_early_methods.split(":") + benchmark["Multiview"]["Fusion"]["Methods"]["EarlyFusion"] = args.FU_early_methods.split(":") benchmark["Multiview"]["Fusion"]["Classifiers"] = args.FU_cl_names.split(":") @@ -199,10 +209,9 @@ if "Monoview" in args.CL_type.strip(":"): fusionClassifierConfig = "a" -fusionMethodConfig = "a" +fusionMethodConfig = ["q", "b"] mumboClassifierConfig = "a" mumboclassifierNames = "a" -metrics = args.CL_metrics.split(":") RandomForestKWARGS = {"0":map(int, args.CL_RF_trees.split())} SVMLinearKWARGS = {"0":map(int, args.CL_SVML_C.split(":"))} @@ -227,13 +236,13 @@ if benchmark["Monoview"]: argumentDictionaries["Monoview"][str(view)].append(arguments) bestClassifiers = [] bestClassifiersConfigs = [] -resultsMonoview =[] +resultsMonoview = [] for viewIndex, viewArguments in enumerate(argumentDictionaries["Monoview"].values()): - resultsMonoview += (Parallel(n_jobs=nbCores)( + resultsMonoview.append( (Parallel(n_jobs=nbCores)( delayed(ExecMonoview)(DATASET.get("View"+str(viewIndex)), DATASET.get("labels").value, args.name, args.CL_split, args.CL_nbFolds, 1, args.type, args.pathF, gridSearch=True, - metrics=metrics[viewIndex], **arguments) - for arguments in viewArguments)) + metric=metric, nIter=args.CL_GS_iter, **arguments) + for arguments in viewArguments))) accuracies = [result[1] for result in resultsMonoview[viewIndex]] classifiersNames = [result[0] for result in resultsMonoview[viewIndex]] @@ -242,54 +251,54 @@ for viewIndex, viewArguments in enumerate(argumentDictionaries["Monoview"].value bestClassifiersConfigs.append(classifiersConfigs[np.argmax(np.array(accuracies))]) # bestClassifiers = ["DecisionTree", "DecisionTree", "DecisionTree", "DecisionTree"] # bestClassifiersConfigs = [["1"],["1"],["1"],["1"]] -# -# if benchmark["Multiview"]: -# if benchmark["Multiview"]["Mumbo"]: -# for classifier in benchmark["Multiview"]["Mumbo"]: -# arguments = {"CL_type": "Mumbo", -# "views": args.views.split(":"), -# "NB_VIEW": len(args.views.split(":")), -# "NB_CLASS": len(args.CL_classes.split(":")), -# "LABELS_NAMES": args.CL_classes.split(":"), -# "MumboKWARGS": {"classifiersNames": ["DecisionTree", "DecisionTree", "DecisionTree", -# "DecisionTree"], -# "maxIter":int(args.MU_iter[0]), "minIter":int(args.MU_iter[1]), -# "threshold":args.MU_iter[2]}} -# argumentDictionaries["Multiview"].append(arguments) -# if benchmark["Multiview"]["Fusion"]: -# if benchmark["Multiview"]["Fusion"]["Methods"]["LateFusion"] and benchmark["Multiview"]["Fusion"]["Classifiers"]: -# for method in benchmark["Multiview"]["Fusion"]["Methods"]["LateFusion"]: -# arguments = {"CL_type": "Fusion", -# "views": args.views.split(":"), -# "NB_VIEW": len(args.views.split(":")), -# "NB_CLASS": len(args.CL_classes.split(":")), -# "LABELS_NAMES": args.CL_classes.split(":"), -# "FusionKWARGS": {"fusionType":"LateFusion", "fusionMethod":method, -# "classifiersNames": bestClassifiers, -# "classifiersConfigs": bestClassifiersConfigs, -# 'fusionMethodConfig': fusionMethodConfig}} -# argumentDictionaries["Multiview"].append(arguments) -# if benchmark["Multiview"]["Fusion"]["Methods"]["EarlyFusion"] and benchmark["Multiview"]["Fusion"]["Classifiers"]: -# for method in benchmark["Multiview"]["Fusion"]["Methods"]["EarlyFusion"]: -# for classifier in benchmark["Multiview"]["Fusion"]["Classifiers"]: -# arguments = {"CL_type": "Fusion", -# "views": args.views.split(":"), -# "NB_VIEW": len(args.views.split(":")), -# "NB_CLASS": len(args.CL_classes.split(":")), -# "LABELS_NAMES": args.CL_classes.split(":"), -# "FusionKWARGS": {"fusionType":"EarlyFusion", "fusionMethod":method, -# "classifiersNames": classifier, -# "classifiersConfigs": fusionClassifierConfig, -# 'fusionMethodConfig': fusionMethodConfig}} -# argumentDictionaries["Multiview"].append(arguments) - -# resultsMultiview = Parallel(n_jobs=nbCores)( -# delayed(ExecMultiview)(DATASET, args.name, args.CL_split, args.CL_nbFolds, 1, args.type, args.pathF, -# LABELS_DICTIONARY, gridSearch=True, metrics=metrics, **arguments) -# for arguments in argumentDictionaries["Multiview"]) -resultsMultiview = [] + +if benchmark["Multiview"]: + if benchmark["Multiview"]["Mumbo"]: + for combination in itertools.combinations_with_replacement(range(len(benchmark["Multiview"]["Mumbo"])), NB_VIEW): + classifiersNames = [benchmark["Multiview"]["Mumbo"][index] for index in combination] + arguments = {"CL_type": "Mumbo", + "views": args.views.split(":"), + "NB_VIEW": len(args.views.split(":")), + "NB_CLASS": len(args.CL_classes.split(":")), + "LABELS_NAMES": args.CL_classes.split(":"), + "MumboKWARGS": {"classifiersNames": classifiersNames, + "maxIter":int(args.MU_iter[0]), "minIter":int(args.MU_iter[1]), + "threshold":args.MU_iter[2]}} + argumentDictionaries["Multiview"].append(arguments) + if benchmark["Multiview"]["Fusion"]: + if benchmark["Multiview"]["Fusion"]["Methods"]["LateFusion"] and benchmark["Multiview"]["Fusion"]["Classifiers"]: + for method in benchmark["Multiview"]["Fusion"]["Methods"]["LateFusion"]: + arguments = {"CL_type": "Fusion", + "views": args.views.split(":"), + "NB_VIEW": len(args.views.split(":")), + "NB_CLASS": len(args.CL_classes.split(":")), + "LABELS_NAMES": args.CL_classes.split(":"), + "FusionKWARGS": {"fusionType":"LateFusion", "fusionMethod":method, + "classifiersNames": bestClassifiers, + "classifiersConfigs": bestClassifiersConfigs, + 'fusionMethodConfig': fusionMethodConfig}} + argumentDictionaries["Multiview"].append(arguments) + if benchmark["Multiview"]["Fusion"]["Methods"]["EarlyFusion"] and benchmark["Multiview"]["Fusion"]["Classifiers"]: + for method in benchmark["Multiview"]["Fusion"]["Methods"]["EarlyFusion"]: + for classifier in benchmark["Multiview"]["Fusion"]["Classifiers"]: + arguments = {"CL_type": "Fusion", + "views": args.views.split(":"), + "NB_VIEW": len(args.views.split(":")), + "NB_CLASS": len(args.CL_classes.split(":")), + "LABELS_NAMES": args.CL_classes.split(":"), + "FusionKWARGS": {"fusionType":"EarlyFusion", "fusionMethod":method, + "classifiersNames": classifier, + "classifiersConfigs": fusionClassifierConfig, + 'fusionMethodConfig': fusionMethodConfig}} + argumentDictionaries["Multiview"].append(arguments) + +print len(argumentDictionaries["Multiview"]), len(argumentDictionaries["Monoview"]) +resultsMultiview = Parallel(n_jobs=nbCores)( + delayed(ExecMultiview)(DATASET, args.name, args.CL_split, args.CL_nbFolds, 1, args.type, args.pathF, + LABELS_DICTIONARY, gridSearch=True, metrics=metrics, **arguments) + for arguments in argumentDictionaries["Multiview"]) + results = (resultsMonoview, resultsMultiview) resultAnalysis(benchmark, results) -print len(argumentDictionaries["Multiview"]), len(argumentDictionaries["Monoview"]) diff --git a/Code/MonoMutliViewClassifiers/Metrics/__init__.py b/Code/MonoMutliViewClassifiers/Metrics/__init__.py index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..9bbd76fbbcd47eb690b8c69a78695d7ef7ab1660 100644 --- a/Code/MonoMutliViewClassifiers/Metrics/__init__.py +++ b/Code/MonoMutliViewClassifiers/Metrics/__init__.py @@ -0,0 +1,7 @@ +import os +for module in os.listdir(os.path.dirname(os.path.realpath(__file__))): + if module == '__init__.py' or module[-3:] != '.py': + continue + __import__(module[:-3], locals(), globals()) +del module +del os \ No newline at end of file diff --git a/Code/MonoMutliViewClassifiers/Monoview/ExecClassifMonoView.py b/Code/MonoMutliViewClassifiers/Monoview/ExecClassifMonoView.py index 9e2a187ce60d9edfa5d6c69d3ebbac2a59e7072c..d6d172e8912ee1e5f40956c6a6d38f99a7bd8eb7 100644 --- a/Code/MonoMutliViewClassifiers/Monoview/ExecClassifMonoView.py +++ b/Code/MonoMutliViewClassifiers/Monoview/ExecClassifMonoView.py @@ -32,7 +32,7 @@ __date__ = 2016-03-25 def ExecMonoview(X, Y, name, learningRate, nbFolds, nbCores, databaseType, path, gridSearch=True, - metrics="accuracy_score", **kwargs): + metric=["accuracy_score", None], nIter=30, **kwargs): t_start = time.time() directory = os.path.dirname(os.path.abspath(__file__)) + "/Results-ClassMonoView/" @@ -43,7 +43,6 @@ def ExecMonoview(X, Y, name, learningRate, nbFolds, nbCores, databaseType, path, CL_type = kwargs["CL_type"] classifierKWARGS = kwargs[CL_type+"KWARGS"] X = X.value - metrics = [getattr(Metrics, metric) for metric in metrics] # Determine the Database to extract features logging.debug("### Main Programm for Classification MonoView") @@ -62,18 +61,17 @@ def ExecMonoview(X, Y, name, learningRate, nbFolds, nbCores, databaseType, path, # Begin Classification RandomForest logging.debug("Start:\t Classification") - classifierModule = getattr(MonoviewClassifiers, CL_type) classifierGridSearch = getattr(classifierModule, "gridSearch") - cl_desc = classifierGridSearch(X_train, y_train, nbFolds=nbFolds, nbCores=nbCores, metrics=metrics) - cl_res = classifierModule.fit(X_train, y_train, NB_CORES=nbCores) + cl_desc = classifierGridSearch(X_train, y_train, nbFolds=nbFolds, nbCores=nbCores, metric=metric, nIter=nIter) + cl_res = classifierModule.fit(X_train, y_train, NB_CORES=nbCores, **dict((str(index), desc) for index, desc in enumerate(cl_desc))) t_end = time.time() - t_start # Add result to Results DF df_class_res = pd.DataFrame() - df_class_res = df_class_res.append({'a_class_time':t_end, 'b_cl_desc': cl_desc, 'c_cl_res': cl_res, - 'd_cl_score': cl_res.best_score_}, ignore_index=True) + # df_class_res = df_class_res.append({'a_class_time':t_end, 'b_cl_desc': cl_desc, 'c_cl_res': cl_res, + # 'd_cl_score': cl_res.best_score_}, ignore_index=True) logging.debug("Info:\t Time for Classification: " + str(t_end) + "[s]") logging.debug("Done:\t Classification") diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/Adaboost.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/Adaboost.py index df9269d6f9f2c54fbec649af768a13a79f00933d..a3ba7f6799be75a818d943c5d2e2a51b0288ba59 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/Adaboost.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/Adaboost.py @@ -2,18 +2,15 @@ from sklearn.ensemble import AdaBoostClassifier from sklearn.pipeline import Pipeline from sklearn.grid_search import RandomizedSearchCV from sklearn.tree import DecisionTreeClassifier -from sklearn.utils.testing import all_estimators -import inspect -import numpy as np import Metrics - +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): num_estimators = int(kwargs['0']) - base_estimators = int(kwargs['1']) + base_estimators = kwargs['1'] classifier = AdaBoostClassifier(n_estimators=num_estimators, base_estimator=base_estimators) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -29,16 +26,22 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return description, detector -def gridSearch(X_train, y_train, nbFolds=4, metric=["accuracy_score", None], nbCores=1): +def gridSearch(X_train, y_train, nbFolds=4, metric=["accuracy_score", None], nIter=30, nbCores=1): + pipeline = Pipeline([('classifier', AdaBoostClassifier())]) - classifiers = [clf for name, clf in all_estimators(type_filter='classifier') - if 'sample_weight' in inspect.getargspec(clf().fit)[0] - and (name != "AdaBoostClassifier" and name !="GradientBoostingClassifier")] - param= {"classifier__n_estimators": np.random.randint(1, 30, 10), - "classifier__base_estimator": classifiers} + # classifiers = [clf for name, clf in all_estimators(type_filter='classifier') + # if 'sample_weight' in inspect.getargspec(clf().fit)[0] + # and (name != "AdaBoostClassifier" and name !="GradientBoostingClassifier" )] + + param= {"classifier__n_estimators": randint(1, 15), + "classifier__base_estimator": [DecisionTreeClassifier()]} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid = RandomizedSearchCV(pipeline,param_distributions=param,refit=True,n_jobs=nbCores,scoring='accuracy',cv=nbFolds) + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid = RandomizedSearchCV(pipeline, n_iter=nIter, param_distributions=param,refit=True,n_jobs=nbCores,scoring=scorer,cv=nbFolds) detector = grid.fit(X_train, y_train) desc_estimators = [detector.best_params_["classifier__n_estimators"], detector.best_params_["classifier__base_estimator"]] diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/DecisionTree.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/DecisionTree.py index ce7e739b5e3210eb1ceab70c17618e1b84d5d07b..5dd79f6573102fb4f27d8c8f1e406653b01c8ba6 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/DecisionTree.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/DecisionTree.py @@ -1,14 +1,14 @@ from sklearn.tree import DecisionTreeClassifier from sklearn.pipeline import Pipeline # Pipelining in classification -from sklearn.grid_search import GridSearchCV -import numpy as np +from sklearn.grid_search import RandomizedSearchCV import Metrics +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1, **kwargs): maxDepth = int(kwargs['0']) classifier = DecisionTreeClassifier(max_depth=maxDepth) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -24,12 +24,16 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1, **kwargs): # return description, DT_detector -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30): pipeline_DT = Pipeline([('classifier', DecisionTreeClassifier())]) - param_DT = {"classifier__max_depth":np.random.randint(1, 30, 10)} + param_DT = {"classifier__max_depth": randint(1, 30)} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_DT = GridSearchCV(pipeline_DT, param_grid=param_DT, refit=True, n_jobs=nbCores, scoring='accuracy', + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_DT = RandomizedSearchCV(pipeline_DT, n_iter=nIter, param_distributions=param_DT, refit=True, n_jobs=nbCores, scoring=scorer, cv=nbFolds) DT_detector = grid_DT.fit(X_train, y_train) desc_params = [DT_detector.best_params_["classifier__max_depth"]] diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/KNN.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/KNN.py index 5e51332539c0f7d446a7906b5b73f3d14c9c1c6d..e8edfbef5be5ab06ed45f9193d74b0cebba93ef9 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/KNN.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/KNN.py @@ -1,14 +1,14 @@ from sklearn.neighbors import KNeighborsClassifier from sklearn.pipeline import Pipeline # Pipelining in classification -from sklearn.grid_search import GridSearchCV -import numpy as np +from sklearn.grid_search import RandomizedSearchCV import Metrics +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): nNeighbors = int(kwargs['0']) classifier = KNeighborsClassifier(n_neighbors=nNeighbors) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -24,12 +24,16 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return description, KNN_detector -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30 ): pipeline_KNN = Pipeline([('classifier', KNeighborsClassifier())]) - param_KNN = {"classifier__n_neighbors": np.random.randint(1, 30, 10)} + param_KNN = {"classifier__n_neighbors": randint(1, 50)} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_KNN = GridSearchCV(pipeline_KNN, param_grid=param_KNN, refit=True, n_jobs=nbCores, scoring='accuracy', + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_KNN = RandomizedSearchCV(pipeline_KNN, n_iter=nIter, param_distributions=param_KNN, refit=True, n_jobs=nbCores, scoring=scorer, cv=nbFolds) KNN_detector = grid_KNN.fit(X_train, y_train) desc_params = [KNN_detector.best_params_["classifier__n_neighbors"]] diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/RandomForest.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/RandomForest.py index 445fdfec6d30e8b49cd58ba261b44d30c444f588..b40cf6e3b5bf4aa97a049f604ae41fb2b7365c05 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/RandomForest.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/RandomForest.py @@ -1,15 +1,15 @@ from sklearn.ensemble import RandomForestClassifier from sklearn.pipeline import Pipeline -from sklearn.grid_search import GridSearchCV +from sklearn.grid_search import RandomizedSearchCV import Metrics - +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): num_estimators = int(kwargs['0']) maxDepth = int(kwargs['1']) classifier = RandomForestClassifier(n_estimators=num_estimators, max_depth=maxDepth, n_jobs=NB_CORES) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -43,15 +43,21 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return description, rf_detector -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30): pipeline_rf = Pipeline([('classifier', RandomForestClassifier())]) - param_rf = {"classifier__n_estimators": np.random.randint(1, 30, 10)} + param_rf = {"classifier__n_estimators": randint(1, 30), + "classifier__max_depth":randint(1, 30)} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_rf = GridSearchCV(pipeline_rf,param_grid=param_rf,refit=True,n_jobs=nbCores,scoring='accuracy',cv=nbFolds) + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_rf = RandomizedSearchCV(pipeline_rf, n_iter=nIter,param_distributions=param_rf,refit=True,n_jobs=nbCores,scoring=scorer,cv=nbFolds) rf_detector = grid_rf.fit(X_train, y_train) - desc_estimators = [rf_detector.best_params_["classifier__n_estimators"]] + desc_estimators = [rf_detector.best_params_["classifier__n_estimators"], + rf_detector.best_params_["classifier__max_depth"]] return desc_estimators diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SGD.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SGD.py index 156277031304ae373c6545dd44fcb6da93f4ab93..4323e74494b422ef203366222719de90ac86953e 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SGD.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SGD.py @@ -1,20 +1,19 @@ from sklearn.linear_model import SGDClassifier from sklearn.pipeline import Pipeline # Pipelining in classification -from sklearn.grid_search import GridSearchCV -import numpy as np +from sklearn.grid_search import RandomizedSearchCV import Metrics - +from scipy.stats import uniform def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): loss = kwargs['0'] penalty = kwargs['1'] try: - alpha = int(kwargs['2']) + alpha = float(kwargs['2']) except: alpha = 0.15 classifier = SGDClassifier(loss=loss, penalty=penalty, alpha=alpha) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -32,16 +31,20 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return description, SGD_detector -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30): pipeline_SGD = Pipeline([('classifier', SGDClassifier())]) losses = ['hinge', 'log', 'modified_huber', 'squared_hinge', 'perceptron'] penalties = ["l1", "l2", "elasticnet"] - alphas = list(np.random.randint(1,10,10))+list(np.random.random_sample(10)) + alphas = uniform() param_SGD = {"classifier__loss": losses, "classifier__penalty": penalties, "classifier__alpha": alphas} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_SGD = GridSearchCV(pipeline_SGD, param_grid=param_SGD, refit=True, n_jobs=nbCores, scoring='accuracy', + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_SGD = RandomizedSearchCV(pipeline_SGD, n_iter=nIter, param_distributions=param_SGD, refit=True, n_jobs=nbCores, scoring=scorer, cv=nbFolds) SGD_detector = grid_SGD.fit(X_train, y_train) desc_params = [SGD_detector.best_params_["classifier__loss"], SGD_detector.best_params_["classifier__penalty"], diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMLinear.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMLinear.py index 43619432619f8e12c3757e15baac61ad38d7a815..523e998bb70cb4bbfb738ed33e191091d8c59e2c 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMLinear.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMLinear.py @@ -1,15 +1,14 @@ from sklearn.svm import SVC from sklearn.pipeline import Pipeline # Pipelining in classification -from sklearn.grid_search import GridSearchCV -import numpy as np +from sklearn.grid_search import RandomizedSearchCV import Metrics - +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): C = int(kwargs['0']) classifier = SVC(C=C, kernel='linear', probability=True) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -25,12 +24,16 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return description, SVMLinear_detector -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30): pipeline_SVMLinear = Pipeline([('classifier', SVC(kernel="linear"))]) - param_SVMLinear = {"classifier__C":np.random.randint(1,2000,30)} + param_SVMLinear = {"classifier__C":randint(1, 10000)} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_SVMLinear = GridSearchCV(pipeline_SVMLinear, param_grid=param_SVMLinear, refit=True, n_jobs=nbCores, scoring='accuracy', + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_SVMLinear = RandomizedSearchCV(pipeline_SVMLinear, n_iter=nIter,param_distributions=param_SVMLinear, refit=True, n_jobs=nbCores, scoring=scorer, cv=nbFolds) SVMLinear_detector = grid_SVMLinear.fit(X_train, y_train) diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMPoly.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMPoly.py index 7db4dd564420cf5b438736f039c317492e87c0b9..7285b29e98804cc32ee92e9c418aec4e4fac744a 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMPoly.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMPoly.py @@ -1,16 +1,15 @@ from sklearn.svm import SVC from sklearn.pipeline import Pipeline # Pipelining in classification -from sklearn.grid_search import GridSearchCV -import numpy as np +from sklearn.grid_search import RandomizedSearchCV import Metrics - +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): C = int(kwargs['0']) degree = int(kwargs['1']) classifier = SVC(C=C, kernel='poly', degree=degree, probability=True) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -25,15 +24,19 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return desc_params -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): - pipeline_SVMRBF = Pipeline([('classifier', SVC(kernel="poly"))]) - param_SVMRBF = {"classifier__C": np.random.randint(1,2000,30)} +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30): + pipeline_SVMPoly = Pipeline([('classifier', SVC(kernel="poly"))]) + param_SVMPoly = {"classifier__C": randint(1, 10000), "classifier__degree":randint(1, 30)} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_SVMRBF = GridSearchCV(pipeline_SVMRBF, param_grid=param_SVMRBF, refit=True, n_jobs=nbCores, scoring='accuracy', + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_SVMPoly = RandomizedSearchCV(pipeline_SVMPoly, n_iter=nIter, param_distributions=param_SVMPoly, refit=True, n_jobs=nbCores, scoring=scorer, cv=nbFolds) - SVMRBF_detector = grid_SVMRBF.fit(X_train, y_train) - desc_params = [SVMRBF_detector.best_params_["classifier__C"]] + SVMRBF_detector = grid_SVMPoly.fit(X_train, y_train) + desc_params = [SVMRBF_detector.best_params_["classifier__C"], SVMRBF_detector.best_params_["classifier__degree"]] return desc_params diff --git a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMRBF.py b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMRBF.py index 7c2e92767aa55e46651a3a6b5261cab2b6241aaa..481f2ec0ee632af4c65829265f4a7c84374c7522 100644 --- a/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMRBF.py +++ b/Code/MonoMutliViewClassifiers/MonoviewClassifiers/SVMRBF.py @@ -1,15 +1,14 @@ from sklearn.svm import SVC from sklearn.pipeline import Pipeline # Pipelining in classification -from sklearn.grid_search import GridSearchCV -import numpy as np +from sklearn.grid_search import RandomizedSearchCV import Metrics - +from scipy.stats import randint def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): C = int(kwargs['0']) classifier = SVC(C=C, kernel='rbf', probability=True) classifier.fit(DATASET, CLASS_LABELS) - return "No desc", classifier + return classifier # def fit_gridsearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): @@ -25,12 +24,16 @@ def fit(DATASET, CLASS_LABELS, NB_CORES=1,**kwargs): # return description, SVMRBF_detector -def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], **kwargs): +def gridSearch(X_train, y_train, nbFolds=4, nbCores=1, metric=["accuracy_score", None], nIter=30): pipeline_SVMRBF = Pipeline([('classifier', SVC(kernel="rbf"))]) - param_SVMRBF = {"classifier__C": np.random.randint(1,2000,30)} + param_SVMRBF = {"classifier__C": randint(1, 10000)} metricModule = getattr(Metrics, metric[0]) - scorer = metricModule.get_scorer(dict((index, metricConfig) for index, metricConfig in enumerate(metric[1]))) - grid_SVMRBF = GridSearchCV(pipeline_SVMRBF, param_grid=param_SVMRBF, refit=True, n_jobs=nbCores, scoring='accuracy', + if metric[1]!=None: + metricKWARGS = dict((index, metricConfig) for index, metricConfig in enumerate(metric[1])) + else: + metricKWARGS = {} + scorer = metricModule.get_scorer(**metricKWARGS) + grid_SVMRBF = RandomizedSearchCV(pipeline_SVMRBF, n_iter=nIter, param_distributions=param_SVMRBF, refit=True, n_jobs=nbCores, scoring=scorer, cv=nbFolds) SVMRBF_detector = grid_SVMRBF.fit(X_train, y_train) desc_params = [SVMRBF_detector.best_params_["classifier__C"]] diff --git a/Code/MonoMutliViewClassifiers/Multiview/ExecMultiview.py b/Code/MonoMutliViewClassifiers/Multiview/ExecMultiview.py index 450624ec0d8f0ee1f1fdf628329b32687a377a95..aa2160d50fc8a876746a06d36d34c868ee38ff2d 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/ExecMultiview.py +++ b/Code/MonoMutliViewClassifiers/Multiview/ExecMultiview.py @@ -17,14 +17,14 @@ import time def ExecMultiview(DATASET, name, learningRate, nbFolds, nbCores, databaseType, path, LABELS_DICTIONARY, - gridSearch=False, metrics=None,**kwargs): + gridSearch=False, metric=None, nIter=30, **kwargs): datasetLength = DATASET.get("Metadata").attrs["datasetLength"] NB_VIEW = DATASET.get("Metadata").attrs["nbView"] views = [str(DATASET.get("View"+str(viewIndex)).attrs["name"]) for viewIndex in range(NB_VIEW)] NB_CLASS = DATASET.get("Metadata").attrs["nbClass"] - if not metrics: - metrics = ["accuracy_score" for view in range (NB_VIEW)] + if not metric: + metric = ["accuracy_score", None] CL_type = kwargs["CL_type"] views = kwargs["views"] @@ -82,7 +82,7 @@ def ExecMultiview(DATASET, name, learningRate, nbFolds, nbCores, databaseType, p if gridSearch: logging.info("Start:\t Gridsearching best settings for monoview classifiers") bestSettings, fusionConfig = classifierGridSearch(DATASET, classificationKWARGS, learningIndices - , metrics=metrics) + , metric=metric, nIter=nIter) classificationKWARGS["classifiersConfigs"] = bestSettings try: classificationKWARGS["fusionMethodConfig"] = fusionConfig diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Fusion.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Fusion.py index 73d820402423c0fd1f2135c5a503327f9a466ec1..e036ef5f40953ef0c67957664cdfbd662b46f985 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Fusion.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Fusion.py @@ -7,7 +7,7 @@ def makeMonoviewData_hdf5(DATASET, weights=None, usedIndices=None): if not usedIndices: uesdIndices = range(DATASET.get("Metadata").attrs["datasetLength"]) NB_VIEW = DATASET.get("Metadata").attrs["nbView"] - if type(weights)=="NoneType": + if weights==None: weights = np.array([1/NB_VIEW for i in range(NB_VIEW)]) if sum(weights)!=1: weights = weights/sum(weights) @@ -16,7 +16,7 @@ def makeMonoviewData_hdf5(DATASET, weights=None, usedIndices=None): return monoviewData -def gridSearch_hdf5(DATASET, classificationKWARGS, learningIndices, metrics=None): +def gridSearch_hdf5(DATASET, classificationKWARGS, learningIndices, metric=None, nIter=30): fusionTypeName = classificationKWARGS["fusionType"] fusionTypePackage = globals()[fusionTypeName+"Package"] fusionMethodModuleName = classificationKWARGS["fusionMethod"] @@ -28,12 +28,14 @@ def gridSearch_hdf5(DATASET, classificationKWARGS, learningIndices, metrics=None classifierMethod = getattr(classifierModule, "gridSearch") if fusionMethodModuleName == "LateFusion": bestSettings.append(classifierMethod(DATASET.get("View"+str(classifierIndex))[learningIndices], - DATASET.get("labels")[learningIndices], metrics=metrics[classifierIndex])) + DATASET.get("labels")[learningIndices], metric=metric, + nIter=nIter)) else: bestSettings.append(classifierMethod(makeMonoviewData_hdf5(DATASET, usedIndices=learningIndices), - DATASET.get("labels")[learningIndices], metrics=metrics[classifierIndex])) + DATASET.get("labels")[learningIndices], metric=metric, + nIter=nIter)) classificationKWARGS["classifiersConfigs"] = bestSettings - fusionMethodConfig = fusionMethodModule.gridSearch(DATASET, classificationKWARGS, learningIndices) + fusionMethodConfig = fusionMethodModule.gridSearch(DATASET, classificationKWARGS, learningIndices, nIter=nIter) return bestSettings, fusionMethodConfig @@ -41,8 +43,9 @@ class Fusion: def __init__(self, NB_VIEW, DATASET_LENGTH, CLASS_LABELS, NB_CORES=1,**kwargs): fusionType = kwargs['fusionType'] fusionMethod = kwargs['fusionMethod'] - fusionTypeModule = globals()[fusionType] - fusionMethodClass = getattr(fusionTypeModule, fusionMethod) + fusionTypePackage = globals()[fusionType+"Package"] + fusionMethodModule = getattr(fusionTypePackage, fusionMethod) + fusionMethodClass = getattr(fusionMethodModule, fusionMethod) nbCores = NB_CORES classifierKWARGS = dict((key, value) for key, value in kwargs.iteritems() if key not in ['fusionType', 'fusionMethod']) self.classifier = fusionMethodClass(NB_CORES=nbCores, **classifierKWARGS) diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusion.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusion.py index 627e1bb4a7083b61674554bf9def249cb4dd86ef..0512b1415102c98ac321b361d8d3dd9a7d307eb1 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusion.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusion.py @@ -3,8 +3,6 @@ import numpy as np -import MonoviewClassifiers - class EarlyFusionClassifier(object): def __init__(self, monoviewClassifiersNames, monoviewClassifiersConfigs, NB_CORES=1): @@ -18,7 +16,7 @@ class EarlyFusionClassifier(object): if not usedIndices: uesdIndices = range(DATASET.get("Metadata").attrs["datasetLength"]) NB_VIEW = DATASET.get("Metadata").attrs["nbView"] - if type(weights)=="NoneType": + if weights== None: weights = np.array([1/NB_VIEW for i in range(NB_VIEW)]) if sum(weights)!=1: weights = weights/sum(weights) diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/WeightedLinear.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/WeightedLinear.py index 4965f8312ff487ebfd7b7c3fd76b9529283bcb74..56aaf14610baa35e99ca8f064c24455e6e8de631 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/WeightedLinear.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/WeightedLinear.py @@ -1,15 +1,15 @@ -from EarlyFusion import EarlyFusionClassifier +from ...Methods.EarlyFusion import EarlyFusionClassifier import MonoviewClassifiers import numpy as np from sklearn.metrics import accuracy_score -def gridSearch(DATASET, classificationKWARGS, trainIndices): +def gridSearch(DATASET, classificationKWARGS, trainIndices, nIter=30): bestScore = 0.0 bestConfig = None if classificationKWARGS["fusionMethodConfig"][0] is not None: - for i in range(0): - randomWeightsArray = np.random.random_sample(len(DATASET.get("Metadata").attrs["nbView"])) + for i in range(nIter): + randomWeightsArray = np.random.random_sample(DATASET.get("Metadata").attrs["nbView"]) normalizedArray = randomWeightsArray/np.sum(randomWeightsArray) classificationKWARGS["fusionMethodConfig"][0] = normalizedArray classifier = WeightedLinear(1, **classificationKWARGS) @@ -24,7 +24,7 @@ def gridSearch(DATASET, classificationKWARGS, trainIndices): class WeightedLinear(EarlyFusionClassifier): def __init__(self, NB_CORES=1, **kwargs): - EarlyFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['monoviewClassifiersConfigs'], + EarlyFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['classifiersConfigs'], NB_CORES=NB_CORES) self.weights = np.array(map(float, kwargs['fusionMethodConfig'][0])) @@ -33,7 +33,7 @@ class WeightedLinear(EarlyFusionClassifier): trainIndices = range(DATASET.get("Metadata").attrs["datasetLength"]) self.makeMonoviewData_hdf5(DATASET, weights=self.weights, usedIndices=trainIndices) monoviewClassifierModule = getattr(MonoviewClassifiers, self.monoviewClassifierName) - desc, self.monoviewClassifier = monoviewClassifierModule.fit(self.monoviewData, DATASET.get("labels")[trainIndices], + self.monoviewClassifier = monoviewClassifierModule.fit(self.monoviewData, DATASET.get("labels")[trainIndices], NB_CORES=self.nbCores, **dict((str(configIndex),config) for configIndex,config in enumerate(self.monoviewClassifiersConfig))) diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/__init__.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/__init__.py index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..9bbd76fbbcd47eb690b8c69a78695d7ef7ab1660 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/__init__.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/EarlyFusionPackage/__init__.py @@ -0,0 +1,7 @@ +import os +for module in os.listdir(os.path.dirname(os.path.realpath(__file__))): + if module == '__init__.py' or module[-3:] != '.py': + continue + __import__(module[:-3], locals(), globals()) +del module +del os \ No newline at end of file diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusion.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusion.py index 844f9969af49973876abcdd1e98d1ee584fe77c5..2564c79cb38b0d4ab7253b507008267b73d9fb0d 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusion.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusion.py @@ -36,13 +36,12 @@ class LateFusionClassifier(object): if trainIndices == None: trainIndices = range(DATASET.get("Metadata").attrs["datasetLength"]) nbView = DATASET.get("Metadata").attrs["nbView"] - monoviewResults = Parallel(n_jobs=self.nbCores)( + self.monoviewClassifiers = Parallel(n_jobs=self.nbCores)( delayed(fifMonoviewClassifier)(self.monoviewClassifiersNames[viewIndex], DATASET.get("View"+str(viewIndex))[trainIndices, :], DATASET.get("labels")[trainIndices], self.monoviewClassifiersConfigs[viewIndex]) for viewIndex in range(nbView)) - self.monoviewClassifiers = [monoviewClassifier for desc, monoviewClassifier in monoviewResults] # class WeightedLinear(LateFusionClassifier): diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/BayesianInference.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/BayesianInference.py index af908e11bf76d1ba37ab0b92cfac9e84c0ecd935..9493579259c1e1090073183c32b381e19f66ed9d 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/BayesianInference.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/BayesianInference.py @@ -1,14 +1,14 @@ -from LateFusion import LateFusionClassifier +from ...Methods.LateFusion import LateFusionClassifier import MonoviewClassifiers import numpy as np from sklearn.metrics import accuracy_score -def gridSearch(DATASET, classificationKWARGS, trainIndices): +def gridSearch(DATASET, classificationKWARGS, trainIndices, nIter=30): bestScore = 0.0 bestConfig = None if classificationKWARGS["fusionMethodConfig"][0] is not None: - for i in range(0): - randomWeightsArray = np.random.random_sample(len(DATASET.get("Metadata").attrs["nbView"])) + for i in range(nIter): + randomWeightsArray = np.random.random_sample(DATASET.get("Metadata").attrs["nbView"]) normalizedArray = randomWeightsArray/np.sum(randomWeightsArray) classificationKWARGS["fusionMethodConfig"][0] = normalizedArray classifier = BayesianInference(1, **classificationKWARGS) @@ -23,12 +23,12 @@ def gridSearch(DATASET, classificationKWARGS, trainIndices): class BayesianInference(LateFusionClassifier): def __init__(self, NB_CORES=1, **kwargs): - LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['monoviewClassifiersConfigs'], + LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['classifiersConfigs'], NB_CORES=NB_CORES) self.weights = np.array(map(float, kwargs['fusionMethodConfig'][0])) def predict_hdf5(self, DATASET, usedIndices=None): - nbView = DATASET.get("nbView").value + nbView = DATASET.get("Metadata").attrs["nbView"] if usedIndices == None: usedIndices = range(DATASET.get("Metadata").attrs["datasetLength"]) if sum(self.weights)!=1.0: @@ -40,7 +40,7 @@ class BayesianInference(LateFusionClassifier): viewScores[viewIndex] = np.power(self.monoviewClassifiers[viewIndex].predict_proba(DATASET.get("View" + str(viewIndex)) [usedIndices]), self.weights[viewIndex]) - predictedLabels = np.argmax(np.prod(viewScores, axis=1), axis=1) + predictedLabels = np.argmax(np.prod(viewScores, axis=0), axis=1) else: predictedLabels = [] return predictedLabels diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/MajorityVoting.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/MajorityVoting.py index ce837a4c4475fa971d2365c2ee4e984e877cde3c..166f5ce7872ea1cb81be8f99047273f65ac08828 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/MajorityVoting.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/MajorityVoting.py @@ -1,15 +1,15 @@ -from LateFusion import LateFusionClassifier +from ...Methods.LateFusion import LateFusionClassifier import MonoviewClassifiers import numpy as np from sklearn.metrics import accuracy_score -def gridSearch(DATASET, classificationKWARGS, trainIndices): +def gridSearch(DATASET, classificationKWARGS, trainIndices, nIter=30): bestScore = 0.0 bestConfig = None if classificationKWARGS["fusionMethodConfig"][0] is not None: - for i in range(0): - randomWeightsArray = np.random.random_sample(len(DATASET.get("Metadata").attrs["nbView"])) + for i in range(nIter): + randomWeightsArray = np.random.random_sample(DATASET.get("Metadata").attrs["nbView"]) normalizedArray = randomWeightsArray/np.sum(randomWeightsArray) classificationKWARGS["fusionMethodConfig"][0] = normalizedArray classifier = MajorityVoting(1, **classificationKWARGS) @@ -24,7 +24,7 @@ def gridSearch(DATASET, classificationKWARGS, trainIndices): class MajorityVoting(LateFusionClassifier): def __init__(self, NB_CORES=1, **kwargs): - LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['monoviewClassifiersConfigs'], + LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['classifiersConfigs'], NB_CORES=NB_CORES) self.weights = np.array(map(float, kwargs['fusionMethodConfig'][0])) diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/SVMForLinear.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/SVMForLinear.py index a64644062d7206b5605ac64dc243ce5f8d57aaf4..6dbc3c24120a89b9001909d9860d1e9d35de73f8 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/SVMForLinear.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/SVMForLinear.py @@ -1,4 +1,4 @@ -from LateFusion import LateFusionClassifier +from ...Methods.LateFusion import LateFusionClassifier import MonoviewClassifiers import numpy as np from sklearn.multiclass import OneVsOneClassifier @@ -11,7 +11,7 @@ def gridSearch(DATASET, classificationKWARGS, trainIndices): class SVMForLinear(LateFusionClassifier): def __init__(self, NB_CORES=1, **kwargs): - LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['monoviewClassifiersConfigs'], + LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['classifiersConfigs'], NB_CORES=NB_CORES) self.SVMClassifier = None diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/WeightedLinear.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/WeightedLinear.py index 3ba4b76b104a1179e276df6b583c0a7dfa1b8dcf..64f5c97e83ee27ad80aea28da1091f43f5e49890 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/WeightedLinear.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/WeightedLinear.py @@ -1,15 +1,15 @@ -from LateFusion import LateFusionClassifier +from ...Methods.LateFusion import LateFusionClassifier import MonoviewClassifiers import numpy as np from sklearn.metrics import accuracy_score -def gridSearch(DATASET, classificationKWARGS, trainIndices): +def gridSearch(DATASET, classificationKWARGS, trainIndices, nIter=30): bestScore = 0.0 bestConfig = None if classificationKWARGS["fusionMethodConfig"][0] is not None: - for i in range(0): - randomWeightsArray = np.random.random_sample(len(DATASET.get("Metadata").attrs["nbView"])) + for i in range(nIter): + randomWeightsArray = np.random.random_sample(DATASET.get("Metadata").attrs["nbView"]) normalizedArray = randomWeightsArray/np.sum(randomWeightsArray) classificationKWARGS["fusionMethodConfig"][0] = normalizedArray classifier = WeightedLinear(1, **classificationKWARGS) @@ -24,7 +24,7 @@ def gridSearch(DATASET, classificationKWARGS, trainIndices): class WeightedLinear(LateFusionClassifier): def __init__(self, NB_CORES=1, **kwargs): - LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['monoviewClassifiersConfigs'], + LateFusionClassifier.__init__(self, kwargs['classifiersNames'], kwargs['classifiersConfigs'], NB_CORES=NB_CORES) self.weights = map(float, kwargs['fusionMethodConfig'][0]) diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/__init__.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/__init__.py index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..9bbd76fbbcd47eb690b8c69a78695d7ef7ab1660 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/__init__.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/LateFusionPackage/__init__.py @@ -0,0 +1,7 @@ +import os +for module in os.listdir(os.path.dirname(os.path.realpath(__file__))): + if module == '__init__.py' or module[-3:] != '.py': + continue + __import__(module[:-3], locals(), globals()) +del module +del os \ No newline at end of file diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/__init__.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/__init__.py index b99d85d7dfafb8eb7c2cd4d152d73bfb9e719ec6..3ce1d337621fcf0d079504eda9a1d4e8eab3c05b 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/__init__.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/__init__.py @@ -1 +1,2 @@ -from . import EarlyFusionPackage, LateFusionPackage \ No newline at end of file +from . import EarlyFusion, LateFusion, LateFusionPackage, EarlyFusionPackage +__all__ = ["EarlyFusionPackage", "LateFusionPackage"] \ No newline at end of file diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/poulet/__init__.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/poulet/__init__.py deleted file mode 100644 index 9bbd76fbbcd47eb690b8c69a78695d7ef7ab1660..0000000000000000000000000000000000000000 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/Methods/poulet/__init__.py +++ /dev/null @@ -1,7 +0,0 @@ -import os -for module in os.listdir(os.path.dirname(os.path.realpath(__file__))): - if module == '__init__.py' or module[-3:] != '.py': - continue - __import__(module[:-3], locals(), globals()) -del module -del os \ No newline at end of file diff --git a/Code/MonoMutliViewClassifiers/Multiview/Fusion/__init__.py b/Code/MonoMutliViewClassifiers/Multiview/Fusion/__init__.py index 5ae1818aaad92824f03b932c124d33f018f52df5..9b0e79fab1e5d74993c375706ff03cb472e9f46e 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Fusion/__init__.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Fusion/__init__.py @@ -1,2 +1,2 @@ -from . import Fusion, analyzeResults +from . import Fusion, analyzeResults, Methods __all__ = ["Fusion", "Methods"] \ No newline at end of file diff --git a/Code/MonoMutliViewClassifiers/Multiview/GetMultiviewDb.py b/Code/MonoMutliViewClassifiers/Multiview/GetMultiviewDb.py index c7d4a6c16135b42ae70e8bcd386c55f9da9c5e70..a69ea79e7e016af556bff118a2ae1bd2c7d6a66c 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/GetMultiviewDb.py +++ b/Code/MonoMutliViewClassifiers/Multiview/GetMultiviewDb.py @@ -24,9 +24,9 @@ def getDataset(pathToDB, viewNames, DBName): return np.array(dataset) -def getFakeDB(features, pathF, name , NB_CLASS, LABELS_NAME): +def getFakeDBhdf5(features, pathF, name , NB_CLASS, LABELS_NAME): NB_VIEW = len(features) - DATASET_LENGTH = int(pathF) + DATASET_LENGTH = 300 VIEW_DIMENSIONS = np.random.random_integers(5, 20, NB_VIEW) DATA = dict((indx, @@ -37,7 +37,23 @@ def getFakeDB(features, pathF, name , NB_CLASS, LABELS_NAME): CLASS_LABELS = np.random.random_integers(0, NB_CLASS-1, DATASET_LENGTH) LABELS_DICTIONARY = dict((indx, feature) for indx, feature in enumerate(features)) - return DATA, CLASS_LABELS, LABELS_DICTIONARY, DATASET_LENGTH + datasetFile = h5py.File(pathF+"Fake.hdf5", "w") + for index, viewData in enumerate(DATA.values()): + viewDset = datasetFile.create_dataset("View"+str(index), viewData.shape) + viewDset[...] = viewData + viewDset.attrs["name"] = "View"+str(index) + labelsDset = datasetFile.create_dataset("labels", CLASS_LABELS.shape) + labelsDset[...] = CLASS_LABELS + labelsDset.attrs["name"] = "Labels" + + metaDataGrp = datasetFile.create_group("Metadata") + metaDataGrp.attrs["nbView"] = NB_VIEW + metaDataGrp.attrs["nbClass"] = NB_CLASS + metaDataGrp.attrs["datasetLength"] = len(CLASS_LABELS) + labelDictionary = {0:"No", 1:"Yes"} + datasetFile.close() + datasetFile = h5py.File(pathF+"Fake.hdf5", "r") + return datasetFile, LABELS_DICTIONARY def getAwaLabels(nbLabels, pathToAwa): @@ -385,17 +401,7 @@ def getModifiedMultiOmicDBcsv(features, path, name, NB_CLASS, LABELS_NAMES): clinicalDset.attrs["name"] = "Clinic_" logging.debug("Done:\t Getting Clinical Data") - labelFile = open(path+'brca_labels_triple-negatif.csv') - labels = np.array([int(line.strip().split(',')[1]) for line in labelFile]) - labelsDset = datasetFile.create_dataset("labels", labels.shape) - labelsDset[...] = labels - labelsDset.attrs["name"] = "Labels" - metaDataGrp = datasetFile.create_group("Metadata") - metaDataGrp.attrs["nbView"] = 5 - metaDataGrp.attrs["nbClass"] = 2 - metaDataGrp.attrs["datasetLength"] = len(labels) - labelDictionary = {0:"No", 1:"Yes"} logging.debug("Start:\t Getting Modified RNASeq Data") RNASeq = datasetFile["View2"][...] @@ -408,24 +414,35 @@ def getModifiedMultiOmicDBcsv(features, path, name, NB_CLASS, LABELS_NAMES): mrnaseqDset.attrs["name"] = "MRNASeq" logging.debug("Done:\t Getting Modified RNASeq Data") - datasetFile = h5py.File(path+"ModifiedMultiOmic.hdf5", "r") - logging.debug("Start:\t Getting Binary RNASeq Data") - binarizedRNASeqDset = datasetFile.create_dataset("View5", shape=(len(labels), len(rnaseqData)*(len(rnaseqData)-1)/2), dtype=bool) - for exampleIndex in range(len(labels)): - offseti=0 - rnaseqData = datasetFile["View2"][exampleIndex] - for i, idata in enumerate(rnaseqData): - for j, jdata in enumerate(rnaseqData): - if i < j: - binarizedRNASeqDset[offseti+j] = idata > jdata - offseti += len(rnaseqData)-i-1 - binarizedRNASeqDset.attrs["name"] = "BRNASeq" - i=0 - for featureIndex in range(len(rnaseqData)*(len(rnaseqData)-1)/2): - if allSame(binarizedRNASeqDset[:, featureIndex]): - i+=1 - print i - logging.debug("Done:\t Getting Binary RNASeq Data") + labelFile = open(path+'brca_labels_triple-negatif.csv') + labels = np.array([int(line.strip().split(',')[1]) for line in labelFile]) + labelsDset = datasetFile.create_dataset("labels", labels.shape) + labelsDset[...] = labels + labelsDset.attrs["name"] = "Labels" + + metaDataGrp = datasetFile.create_group("Metadata") + metaDataGrp.attrs["nbView"] = 5 + metaDataGrp.attrs["nbClass"] = 2 + metaDataGrp.attrs["datasetLength"] = len(labels) + labelDictionary = {0:"No", 1:"Yes"} + # datasetFile = h5py.File(path+"ModifiedMultiOmic.hdf5", "r") + # logging.debug("Start:\t Getting Binary RNASeq Data") + # binarizedRNASeqDset = datasetFile.create_dataset("View5", shape=(len(labels), len(rnaseqData)*(len(rnaseqData)-1)/2), dtype=bool) + # for exampleIndex in range(len(labels)): + # offseti=0 + # rnaseqData = datasetFile["View2"][exampleIndex] + # for i, idata in enumerate(rnaseqData): + # for j, jdata in enumerate(rnaseqData): + # if i < j: + # binarizedRNASeqDset[offseti+j] = idata > jdata + # offseti += len(rnaseqData)-i-1 + # binarizedRNASeqDset.attrs["name"] = "BRNASeq" + # i=0 + # for featureIndex in range(len(rnaseqData)*(len(rnaseqData)-1)/2): + # if allSame(binarizedRNASeqDset[:, featureIndex]): + # i+=1 + # print i + # logging.debug("Done:\t Getting Binary RNASeq Data") datasetFile.close() diff --git a/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Classifiers/DecisionTree.py b/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Classifiers/DecisionTree.py index 97d57a575609de3fe8f54bd2232ebeba4f7fccdd..d6d947aa8c0741cd7821de9cd7fb638de67c26b0 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Classifiers/DecisionTree.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Classifiers/DecisionTree.py @@ -31,7 +31,7 @@ def getConfig(classifierConfig): return 'with depth ' + str(depth) + ', ' + ' sub-sampled at ' + str(subSampling) + ' ' -def gridSearch(data, labels, metrics="accuracy_score"): +def gridSearch(data, labels, metric="accuracy_score"): minSubSampling = 1.0/(len(labels)/2) bestSettings = [] bestResults = [] diff --git a/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Mumbo.py b/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Mumbo.py index 19dfc8844427f8e93b1c8ab39830a5f5ea2e395d..3f4821521dd3c37d3025cc3aef1a05f3c15af089 100644 --- a/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Mumbo.py +++ b/Code/MonoMutliViewClassifiers/Multiview/Mumbo/Mumbo.py @@ -42,7 +42,7 @@ def trainWeakClassifier_hdf5(classifierName, monoviewDataset, CLASS_LABELS, DATA return classifier, classes, isBad, averageAccuracy -def gridSearch_hdf5(DATASET, classificationKWARGS, learningIndices, metrics=None): +def gridSearch_hdf5(DATASET, classificationKWARGS, learningIndices, metric=None, nIter=None): classifiersNames = classificationKWARGS["classifiersNames"] bestSettings = [] for classifierIndex, classifierName in enumerate(classifiersNames): @@ -50,7 +50,7 @@ def gridSearch_hdf5(DATASET, classificationKWARGS, learningIndices, metrics=None classifierModule = globals()[classifierName] # Permet d'appeler une fonction avec une string classifierMethod = getattr(classifierModule, "gridSearch") bestSettings.append(classifierMethod(DATASET.get("View"+str(classifierIndex))[learningIndices], - DATASET.get("labels")[learningIndices], metrics=metrics[classifierIndex])) + DATASET.get("labels")[learningIndices], metric=metric)) logging.debug("\tDone:\t Gridsearch for "+classifierName) return bestSettings, None diff --git a/Code/MonoMutliViewClassifiers/ResultAnalysis.py b/Code/MonoMutliViewClassifiers/ResultAnalysis.py index 1145fad927caa135a809ff78f8843a3bb1271a49..99d3abce7306502d0282e389da8a0bbcee93f96c 100644 --- a/Code/MonoMutliViewClassifiers/ResultAnalysis.py +++ b/Code/MonoMutliViewClassifiers/ResultAnalysis.py @@ -8,26 +8,17 @@ def resultAnalysis(benchmark, results): nbResults = len(mono)+len(multi) accuracies = [float(accuracy)*100 for [a, accuracy, c, d] in mono]+[float(accuracy)*100 for a, b, c, d, accuracy in multi] f = pylab.figure() + try: + fig = plt.gcf() + fig.subplots_adjust(bottom=2.0) + except: + pass ax = f.add_axes([0.1, 0.1, 0.8, 0.8]) ax.set_title("Accuracies on validation set for each classifier") ax.bar(range(nbResults), accuracies, align='center') ax.set_xticks(range(nbResults)) ax.set_xticklabels(names, rotation="vertical") - try: - fig = plt.gcf() - fig.subplots_adjust(bottom=0.8) - except: - pass - # plt.bar(range(nbResults), accuracies, 1) - # plt.xlabel('ClassLabels') - # plt.ylabel('Precision in %') - # plt.title('Results of benchmark-Classification') - # plt.axis([0, nbResults, 0, 100]) - # plt.xticks(range(nbResults), rotation="vertical") - # Makes sure that the file does not yet exist f.savefig("Results/poulet"+time.strftime("%Y%m%d-%H%M%S")+".png") - #plt.close() - diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-100913-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-100913-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..98ed54eddc89c60b333769d2ad00bdae85485935 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-100913-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-29 10:09:14,077 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101023-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101023-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..3936a6014c02d0114719fb4843fdccfeced5d9c8 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101023-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:10:23,014 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:10:23,449 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:10:23,449 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:10:23,449 DEBUG: Start: Determine Train/Test split +2016-08-29 10:10:23,504 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:10:23,504 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:10:23,504 DEBUG: Done: Determine Train/Test split +2016-08-29 10:10:23,504 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101050-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101050-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..6df3ccc46e805a2e8c836cffa7e4bb54aab506d6 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101050-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:10:50,980 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:10:51,009 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:10:51,009 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:10:51,009 DEBUG: Start: Determine Train/Test split +2016-08-29 10:10:51,084 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:10:51,084 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:10:51,084 DEBUG: Done: Determine Train/Test split +2016-08-29 10:10:51,085 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101154-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101154-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..7e1bbd2c950146eec05dccb56742f5aa5fa65fb7 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101154-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:11:54,701 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:11:54,714 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:11:54,714 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:11:54,714 DEBUG: Start: Determine Train/Test split +2016-08-29 10:11:54,732 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:11:54,732 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:11:54,732 DEBUG: Done: Determine Train/Test split +2016-08-29 10:11:54,732 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101345-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101345-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..46f9c6f37afc18dc7e1b5fb83740c4b304b6c2fc --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101345-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:13:45,809 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:13:45,822 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:13:45,823 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:13:45,823 DEBUG: Start: Determine Train/Test split +2016-08-29 10:13:45,838 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:13:45,838 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:13:45,838 DEBUG: Done: Determine Train/Test split +2016-08-29 10:13:45,838 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101352-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101352-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..8be8e66a0fcbb4bed0a6e202d609999ab5d44935 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101352-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-29 10:13:52,819 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101503-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101503-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..f589fa98cf63878a9598af5a915cd9022bb0bfd0 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101503-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:15:03,270 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:15:03,283 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:15:03,283 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:15:03,284 DEBUG: Start: Determine Train/Test split +2016-08-29 10:15:03,297 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:15:03,297 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:15:03,298 DEBUG: Done: Determine Train/Test split +2016-08-29 10:15:03,298 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101558-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101558-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..cdb502cfd034edd63e7fbfb181c77d623ce529be --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101558-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:15:58,072 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:15:58,097 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:15:58,097 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:15:58,097 DEBUG: Start: Determine Train/Test split +2016-08-29 10:15:58,120 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:15:58,120 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:15:58,121 DEBUG: Done: Determine Train/Test split +2016-08-29 10:15:58,121 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101646-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101646-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..06313cca0dfbd55e244456ab64d76f35864f745d --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101646-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:16:46,408 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:16:46,431 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:16:46,431 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:16:46,431 DEBUG: Start: Determine Train/Test split +2016-08-29 10:16:46,482 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:16:46,483 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:16:46,483 DEBUG: Done: Determine Train/Test split +2016-08-29 10:16:46,483 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101740-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101740-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..a2dd7d2bcdcb48c567e72ab1995cade773300280 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101740-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:17:40,406 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:17:40,426 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:17:40,427 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:17:40,427 DEBUG: Start: Determine Train/Test split +2016-08-29 10:17:40,453 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:17:40,453 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:17:40,453 DEBUG: Done: Determine Train/Test split +2016-08-29 10:17:40,453 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101751-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101751-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e1a227119c7a1546345669226249ed7cb2148047 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101751-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:17:51,798 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:17:51,820 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:17:51,820 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:17:51,820 DEBUG: Start: Determine Train/Test split +2016-08-29 10:17:51,843 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:17:51,844 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:17:51,844 DEBUG: Done: Determine Train/Test split +2016-08-29 10:17:51,844 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101941-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101941-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..812afeadfcf2c3e8f910bc49815560639c4c2540 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101941-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:19:41,708 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:19:41,729 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:19:41,729 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:19:41,729 DEBUG: Start: Determine Train/Test split +2016-08-29 10:19:41,753 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:19:41,753 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:19:41,754 DEBUG: Done: Determine Train/Test split +2016-08-29 10:19:41,754 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-101956-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-101956-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..3015c4d1ae46f1920186243299d6f959858e6d94 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-101956-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:19:56,966 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:19:56,988 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:19:56,989 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:19:56,989 DEBUG: Start: Determine Train/Test split +2016-08-29 10:19:57,015 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:19:57,015 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:19:57,015 DEBUG: Done: Determine Train/Test split +2016-08-29 10:19:57,015 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-102012-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-102012-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..4d24f175e63e8fd583b2c203ea7cc83acdf68684 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-102012-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:20:12,435 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:20:12,475 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:20:12,475 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:20:12,475 DEBUG: Start: Determine Train/Test split +2016-08-29 10:20:12,504 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:20:12,504 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:20:12,504 DEBUG: Done: Determine Train/Test split +2016-08-29 10:20:12,504 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-102220-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-102220-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..5804a953a1de3421875df0c6373e0f57de8f7476 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-102220-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:22:20,103 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:22:20,120 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:22:20,120 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:22:20,120 DEBUG: Start: Determine Train/Test split +2016-08-29 10:22:20,147 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:22:20,147 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:22:20,147 DEBUG: Done: Determine Train/Test split +2016-08-29 10:22:20,147 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-102230-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-102230-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..f08e7f53d6ee377a0429aabec1fdb07751f62cb7 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-102230-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:22:30,088 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:22:30,109 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:22:30,109 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:22:30,109 DEBUG: Start: Determine Train/Test split +2016-08-29 10:22:30,133 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:22:30,134 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:22:30,134 DEBUG: Done: Determine Train/Test split +2016-08-29 10:22:30,134 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-102638-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-102638-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..2ca2bbe551f947b68cac1a93eb08b5aa4683b93c --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-102638-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:26:38,598 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:26:38,625 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:26:38,625 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:26:38,625 DEBUG: Start: Determine Train/Test split +2016-08-29 10:26:38,648 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:26:38,648 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:26:38,648 DEBUG: Done: Determine Train/Test split +2016-08-29 10:26:38,648 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-102655-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-102655-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..ec9d91304b2439b999cbf5096a9b606b995cc75d --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-102655-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:26:55,242 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:26:55,258 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:26:55,258 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:26:55,258 DEBUG: Start: Determine Train/Test split +2016-08-29 10:26:55,282 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:26:55,282 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:26:55,282 DEBUG: Done: Determine Train/Test split +2016-08-29 10:26:55,282 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-102950-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-102950-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..a7c2811b66293d48087553fc03b8b0e92b97ea60 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-102950-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:29:50,267 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:29:50,286 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:29:50,286 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:29:50,286 DEBUG: Start: Determine Train/Test split +2016-08-29 10:29:50,309 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:29:50,310 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:29:50,310 DEBUG: Done: Determine Train/Test split +2016-08-29 10:29:50,310 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-103111-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-103111-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..693210bc2d4e6a160f61097af1c2569bf090af3c --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-103111-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:31:11,631 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:31:11,656 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:31:11,656 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:31:11,656 DEBUG: Start: Determine Train/Test split +2016-08-29 10:31:11,681 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:31:11,682 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:31:11,682 DEBUG: Done: Determine Train/Test split +2016-08-29 10:31:11,682 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-103400-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-103400-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..ef29922b525309bcd79da539aa0fb27a5056c6d0 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-103400-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:34:00,795 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:34:00,815 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:34:00,815 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:34:00,815 DEBUG: Start: Determine Train/Test split +2016-08-29 10:34:00,839 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:34:00,839 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:34:00,839 DEBUG: Done: Determine Train/Test split +2016-08-29 10:34:00,839 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-103541-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-103541-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..d6bfde1595f2c9a4a563aad56c445ef4bb4695fb --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-103541-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:35:41,981 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:35:42,005 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:35:42,005 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:35:42,005 DEBUG: Start: Determine Train/Test split +2016-08-29 10:35:42,031 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:35:42,031 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:35:42,031 DEBUG: Done: Determine Train/Test split +2016-08-29 10:35:42,031 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-103807-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-103807-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..6c0b71b1fe83b9b9279443a409fadccd28bd5c2c --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-103807-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:38:07,944 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:38:07,961 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:38:07,962 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:38:07,962 DEBUG: Start: Determine Train/Test split +2016-08-29 10:38:07,985 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:38:07,985 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:38:07,985 DEBUG: Done: Determine Train/Test split +2016-08-29 10:38:07,985 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-103947-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-103947-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..94ce9abb489a0ef8dd7ef1b47ace4932681a07dd --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-103947-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,10 @@ +2016-08-29 10:39:47,039 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:39:47,055 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:39:47,055 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:39:47,055 DEBUG: Start: Determine Train/Test split +2016-08-29 10:39:47,081 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:39:47,081 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:39:47,081 DEBUG: Done: Determine Train/Test split +2016-08-29 10:39:47,081 DEBUG: Start: Classification +2016-08-29 10:40:55,241 DEBUG: Info: Time for Classification: 68.1998140812[s] +2016-08-29 10:40:55,241 DEBUG: Done: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-104427-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-104427-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..96bde20515ffb996cf9ba2c2190e1f65487733ad --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-104427-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 10:44:27,654 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:44:27,666 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:44:27,667 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:44:27,667 DEBUG: Start: Determine Train/Test split +2016-08-29 10:44:27,689 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:44:27,689 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:44:27,689 DEBUG: Done: Determine Train/Test split +2016-08-29 10:44:27,689 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-104736-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-104736-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..fc023d5fd1b917ddb74d63e5f82e290bd6c2dfbc --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-104736-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,41 @@ +2016-08-29 10:47:36,028 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 10:47:36,061 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:47:36,061 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 10:47:36,061 DEBUG: Start: Determine Train/Test split +2016-08-29 10:47:36,094 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:47:36,094 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:47:36,094 DEBUG: Done: Determine Train/Test split +2016-08-29 10:47:36,094 DEBUG: Start: Classification +2016-08-29 10:48:53,387 DEBUG: Info: Time for Classification: 77.3440101147[s] +2016-08-29 10:48:53,387 DEBUG: Done: Classification +2016-08-29 10:48:53,453 DEBUG: Start: Statistic Results +2016-08-29 10:48:53,453 INFO: Accuracy :0.771428571429 +2016-08-29 10:48:53,606 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:48:53,606 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 10:48:53,606 DEBUG: Start: Determine Train/Test split +2016-08-29 10:48:53,621 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:48:53,621 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:48:53,621 DEBUG: Done: Determine Train/Test split +2016-08-29 10:48:53,621 DEBUG: Start: Classification +2016-08-29 10:50:00,677 DEBUG: Info: Time for Classification: 67.2197928429[s] +2016-08-29 10:50:00,677 DEBUG: Done: Classification +2016-08-29 10:50:00,680 DEBUG: Start: Statistic Results +2016-08-29 10:50:00,681 INFO: Accuracy :0.819047619048 +2016-08-29 10:50:00,697 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:50:00,698 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 10:50:00,698 DEBUG: Start: Determine Train/Test split +2016-08-29 10:50:00,722 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:50:00,722 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:50:00,722 DEBUG: Done: Determine Train/Test split +2016-08-29 10:50:00,723 DEBUG: Start: Classification +2016-08-29 10:50:26,356 DEBUG: Info: Time for Classification: 25.6708378792[s] +2016-08-29 10:50:26,356 DEBUG: Done: Classification +2016-08-29 10:50:27,661 DEBUG: Start: Statistic Results +2016-08-29 10:50:27,661 INFO: Accuracy :0.866666666667 +2016-08-29 10:50:27,678 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 10:50:27,679 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 10:50:27,679 DEBUG: Start: Determine Train/Test split +2016-08-29 10:50:27,702 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 10:50:27,702 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 10:50:27,702 DEBUG: Done: Determine Train/Test split +2016-08-29 10:50:27,702 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-110552-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-110552-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..bbce0c1f0bc2e509d5777af239b576fba13a3482 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-110552-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,41 @@ +2016-08-29 11:05:52,286 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:05:52,312 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:05:52,312 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:05:52,312 DEBUG: Start: Determine Train/Test split +2016-08-29 11:05:52,343 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:05:52,343 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:05:52,343 DEBUG: Done: Determine Train/Test split +2016-08-29 11:05:52,343 DEBUG: Start: Classification +2016-08-29 11:07:01,782 DEBUG: Info: Time for Classification: 69.4608111382[s] +2016-08-29 11:07:01,782 DEBUG: Done: Classification +2016-08-29 11:07:01,847 DEBUG: Start: Statistic Results +2016-08-29 11:07:01,847 INFO: Accuracy :0.761904761905 +2016-08-29 11:07:02,104 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:07:02,104 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 11:07:02,105 DEBUG: Start: Determine Train/Test split +2016-08-29 11:07:02,123 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:07:02,124 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:07:02,124 DEBUG: Done: Determine Train/Test split +2016-08-29 11:07:02,124 DEBUG: Start: Classification +2016-08-29 11:07:58,361 DEBUG: Info: Time for Classification: 56.5090019703[s] +2016-08-29 11:07:58,361 DEBUG: Done: Classification +2016-08-29 11:07:58,364 DEBUG: Start: Statistic Results +2016-08-29 11:07:58,364 INFO: Accuracy :0.847619047619 +2016-08-29 11:07:58,376 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:07:58,376 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 11:07:58,376 DEBUG: Start: Determine Train/Test split +2016-08-29 11:07:58,391 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:07:58,391 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:07:58,391 DEBUG: Done: Determine Train/Test split +2016-08-29 11:07:58,391 DEBUG: Start: Classification +2016-08-29 11:08:22,883 DEBUG: Info: Time for Classification: 24.5160729885[s] +2016-08-29 11:08:22,883 DEBUG: Done: Classification +2016-08-29 11:08:24,141 DEBUG: Start: Statistic Results +2016-08-29 11:08:24,141 INFO: Accuracy :0.819047619048 +2016-08-29 11:08:24,154 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:08:24,154 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 11:08:24,154 DEBUG: Start: Determine Train/Test split +2016-08-29 11:08:24,167 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:08:24,167 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:08:24,167 DEBUG: Done: Determine Train/Test split +2016-08-29 11:08:24,167 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113228-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113228-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..eea4e0e2b6e857c384b9dbb0fe9be63b9e42efab --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113228-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:32:28,555 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:32:28,929 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:32:28,929 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:32:28,929 DEBUG: Start: Determine Train/Test split +2016-08-29 11:32:28,956 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:32:28,956 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:32:28,957 DEBUG: Done: Determine Train/Test split +2016-08-29 11:32:28,957 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113336-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113336-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..6c73282c45a68652c95019290f709b4b05aeb987 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113336-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:33:36,885 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:33:36,898 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:33:36,898 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:33:36,898 DEBUG: Start: Determine Train/Test split +2016-08-29 11:33:36,912 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:33:36,912 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:33:36,912 DEBUG: Done: Determine Train/Test split +2016-08-29 11:33:36,912 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113435-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113435-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..ebe97f820bab5cc90d647a53194f4f4c0fd17ccd --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113435-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:34:35,315 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:34:35,327 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:34:35,327 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:34:35,327 DEBUG: Start: Determine Train/Test split +2016-08-29 11:34:35,341 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:34:35,341 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:34:35,341 DEBUG: Done: Determine Train/Test split +2016-08-29 11:34:35,341 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113503-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113503-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..095f822a782d9429f6620bbf704c1574c28316ed --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113503-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:35:03,863 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:35:03,874 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:35:03,874 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:35:03,874 DEBUG: Start: Determine Train/Test split +2016-08-29 11:35:03,888 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:35:03,888 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:35:03,888 DEBUG: Done: Determine Train/Test split +2016-08-29 11:35:03,888 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113527-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113527-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e4d04078a6f127155b832b041e91b6512c83af08 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113527-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:35:27,343 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:35:27,356 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:35:27,356 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:35:27,356 DEBUG: Start: Determine Train/Test split +2016-08-29 11:35:27,369 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:35:27,370 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:35:27,370 DEBUG: Done: Determine Train/Test split +2016-08-29 11:35:27,370 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113545-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113545-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..d8192fc8e3f19c3d157e8b09ce0c0cda7e00100a --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113545-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:35:45,321 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:35:45,333 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:35:45,334 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:35:45,334 DEBUG: Start: Determine Train/Test split +2016-08-29 11:35:45,347 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:35:45,347 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:35:45,348 DEBUG: Done: Determine Train/Test split +2016-08-29 11:35:45,348 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113603-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113603-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..f29ce0d7aad424ea1ebef9c9855433c8e413e44a --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113603-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:36:03,040 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:36:03,052 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:36:03,052 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:36:03,052 DEBUG: Start: Determine Train/Test split +2016-08-29 11:36:03,066 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:36:03,066 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:36:03,066 DEBUG: Done: Determine Train/Test split +2016-08-29 11:36:03,066 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113620-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113620-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e215d7cf8f7cdb7271ebf01b78571fe5f4f22703 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113620-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:36:20,212 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:36:20,223 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:36:20,223 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:36:20,223 DEBUG: Start: Determine Train/Test split +2016-08-29 11:36:20,237 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:36:20,237 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:36:20,237 DEBUG: Done: Determine Train/Test split +2016-08-29 11:36:20,237 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113634-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113634-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..18c25cb5cde0f9020cc88dbfc41afb22a8be3cdc --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113634-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 11:36:34,528 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:36:34,541 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:36:34,541 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:36:34,541 DEBUG: Start: Determine Train/Test split +2016-08-29 11:36:34,554 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:36:34,555 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:36:34,555 DEBUG: Done: Determine Train/Test split +2016-08-29 11:36:34,555 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-113643-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-113643-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..b2da76d127c533997af3f35c10e37604a7cbe45f --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-113643-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,41 @@ +2016-08-29 11:36:43,371 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 11:36:43,384 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:36:43,384 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 11:36:43,384 DEBUG: Start: Determine Train/Test split +2016-08-29 11:36:43,398 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:36:43,398 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:36:43,398 DEBUG: Done: Determine Train/Test split +2016-08-29 11:36:43,399 DEBUG: Start: Classification +2016-08-29 11:38:00,511 DEBUG: Info: Time for Classification: 77.1025300026[s] +2016-08-29 11:38:00,511 DEBUG: Done: Classification +2016-08-29 11:38:00,522 DEBUG: Start: Statistic Results +2016-08-29 11:38:00,522 INFO: Accuracy :0.809523809524 +2016-08-29 11:38:00,536 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:38:00,536 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 11:38:00,536 DEBUG: Start: Determine Train/Test split +2016-08-29 11:38:00,548 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:38:00,548 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:38:00,548 DEBUG: Done: Determine Train/Test split +2016-08-29 11:38:00,548 DEBUG: Start: Classification +2016-08-29 11:38:56,773 DEBUG: Info: Time for Classification: 56.2486650944[s] +2016-08-29 11:38:56,773 DEBUG: Done: Classification +2016-08-29 11:38:56,777 DEBUG: Start: Statistic Results +2016-08-29 11:38:56,777 INFO: Accuracy :0.8 +2016-08-29 11:38:56,788 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:38:56,788 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 11:38:56,788 DEBUG: Start: Determine Train/Test split +2016-08-29 11:38:56,802 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:38:56,802 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:38:56,803 DEBUG: Done: Determine Train/Test split +2016-08-29 11:38:56,803 DEBUG: Start: Classification +2016-08-29 11:39:21,163 DEBUG: Info: Time for Classification: 24.3840839863[s] +2016-08-29 11:39:21,163 DEBUG: Done: Classification +2016-08-29 11:39:22,430 DEBUG: Start: Statistic Results +2016-08-29 11:39:22,431 INFO: Accuracy :0.866666666667 +2016-08-29 11:39:22,442 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 11:39:22,442 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 11:39:22,442 DEBUG: Start: Determine Train/Test split +2016-08-29 11:39:22,456 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 11:39:22,456 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 11:39:22,456 DEBUG: Done: Determine Train/Test split +2016-08-29 11:39:22,456 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-161224-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-161224-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..57aa82c63827fc0a7f1ea6ba086cb7d938fa8373 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-161224-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,41 @@ +2016-08-29 16:12:24,709 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:12:24,741 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:12:24,741 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:12:24,741 DEBUG: Start: Determine Train/Test split +2016-08-29 16:12:24,762 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:12:24,762 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:12:24,762 DEBUG: Done: Determine Train/Test split +2016-08-29 16:12:24,762 DEBUG: Start: Classification +2016-08-29 16:13:31,023 DEBUG: Info: Time for Classification: 66.301500082[s] +2016-08-29 16:13:31,023 DEBUG: Done: Classification +2016-08-29 16:13:31,028 DEBUG: Start: Statistic Results +2016-08-29 16:13:31,029 INFO: Accuracy :0.8 +2016-08-29 16:13:31,040 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:13:31,040 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 16:13:31,041 DEBUG: Start: Determine Train/Test split +2016-08-29 16:13:31,052 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:13:31,052 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:13:31,052 DEBUG: Done: Determine Train/Test split +2016-08-29 16:13:31,052 DEBUG: Start: Classification +2016-08-29 16:14:39,410 DEBUG: Info: Time for Classification: 68.3794088364[s] +2016-08-29 16:14:39,410 DEBUG: Done: Classification +2016-08-29 16:14:39,413 DEBUG: Start: Statistic Results +2016-08-29 16:14:39,413 INFO: Accuracy :0.809523809524 +2016-08-29 16:14:39,425 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:14:39,425 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 16:14:39,425 DEBUG: Start: Determine Train/Test split +2016-08-29 16:14:39,439 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:14:39,440 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:14:39,440 DEBUG: Done: Determine Train/Test split +2016-08-29 16:14:39,440 DEBUG: Start: Classification +2016-08-29 16:15:04,957 DEBUG: Info: Time for Classification: 25.5417969227[s] +2016-08-29 16:15:04,957 DEBUG: Done: Classification +2016-08-29 16:15:06,265 DEBUG: Start: Statistic Results +2016-08-29 16:15:06,265 INFO: Accuracy :0.819047619048 +2016-08-29 16:15:06,279 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:15:06,279 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 16:15:06,279 DEBUG: Start: Determine Train/Test split +2016-08-29 16:15:06,293 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:15:06,293 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:15:06,293 DEBUG: Done: Determine Train/Test split +2016-08-29 16:15:06,293 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-162734-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-162734-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..ada584030b116b4e3fdb488cdd2fb3f7af97134b --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-162734-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 16:27:34,694 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:27:34,964 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:27:34,965 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:27:34,965 DEBUG: Start: Determine Train/Test split +2016-08-29 16:27:34,980 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:27:34,980 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:27:34,980 DEBUG: Done: Determine Train/Test split +2016-08-29 16:27:34,980 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-162804-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-162804-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..eb8d6c158e41ec66f6a7a40fd9d8c948f3a644ed --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-162804-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,41 @@ +2016-08-29 16:28:04,635 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:28:04,652 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:28:04,652 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:28:04,652 DEBUG: Start: Determine Train/Test split +2016-08-29 16:28:04,667 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:28:04,667 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:28:04,667 DEBUG: Done: Determine Train/Test split +2016-08-29 16:28:04,667 DEBUG: Start: Classification +2016-08-29 16:29:18,596 DEBUG: Info: Time for Classification: 73.9371509552[s] +2016-08-29 16:29:18,596 DEBUG: Done: Classification +2016-08-29 16:29:18,602 DEBUG: Start: Statistic Results +2016-08-29 16:29:18,602 INFO: Accuracy :0.828571428571 +2016-08-29 16:29:18,614 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:29:18,615 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 16:29:18,615 DEBUG: Start: Determine Train/Test split +2016-08-29 16:29:18,627 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:29:18,627 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:29:18,628 DEBUG: Done: Determine Train/Test split +2016-08-29 16:29:18,628 DEBUG: Start: Classification +2016-08-29 16:30:27,563 DEBUG: Info: Time for Classification: 68.9593780041[s] +2016-08-29 16:30:27,564 DEBUG: Done: Classification +2016-08-29 16:30:27,567 DEBUG: Start: Statistic Results +2016-08-29 16:30:27,567 INFO: Accuracy :0.771428571429 +2016-08-29 16:30:27,578 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:30:27,578 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 16:30:27,578 DEBUG: Start: Determine Train/Test split +2016-08-29 16:30:27,593 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:30:27,593 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:30:27,593 DEBUG: Done: Determine Train/Test split +2016-08-29 16:30:27,593 DEBUG: Start: Classification +2016-08-29 16:30:54,275 DEBUG: Info: Time for Classification: 26.7061460018[s] +2016-08-29 16:30:54,275 DEBUG: Done: Classification +2016-08-29 16:30:55,635 DEBUG: Start: Statistic Results +2016-08-29 16:30:55,635 INFO: Accuracy :0.866666666667 +2016-08-29 16:30:55,648 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:30:55,648 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 16:30:55,648 DEBUG: Start: Determine Train/Test split +2016-08-29 16:30:55,661 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:30:55,661 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:30:55,661 DEBUG: Done: Determine Train/Test split +2016-08-29 16:30:55,661 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-163114-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-163114-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..4161cbe0a30a5a373d982a37395fa36067fac6ab --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-163114-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,19 @@ +2016-08-29 16:31:14,680 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:31:14,693 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:31:14,693 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:31:14,693 DEBUG: Start: Determine Train/Test split +2016-08-29 16:31:14,707 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:31:14,707 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:31:14,707 DEBUG: Done: Determine Train/Test split +2016-08-29 16:31:14,707 DEBUG: Start: Classification +2016-08-29 16:32:26,973 DEBUG: Info: Time for Classification: 72.2895948887[s] +2016-08-29 16:32:26,973 DEBUG: Done: Classification +2016-08-29 16:32:26,978 DEBUG: Start: Statistic Results +2016-08-29 16:32:26,978 INFO: Accuracy :0.695238095238 +2016-08-29 16:32:26,990 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:32:26,990 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 16:32:26,990 DEBUG: Start: Determine Train/Test split +2016-08-29 16:32:27,001 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:32:27,001 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:32:27,001 DEBUG: Done: Determine Train/Test split +2016-08-29 16:32:27,001 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-163354-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-163354-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..d6dc75930707fcae963046a539c54e978eae8cc0 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-163354-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,52 @@ +2016-08-29 16:33:54,279 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:33:54,292 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:33:54,292 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:33:54,292 DEBUG: Start: Determine Train/Test split +2016-08-29 16:33:54,305 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:33:54,305 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:33:54,305 DEBUG: Done: Determine Train/Test split +2016-08-29 16:33:54,305 DEBUG: Start: Classification +2016-08-29 16:34:58,988 DEBUG: Info: Time for Classification: 64.7065241337[s] +2016-08-29 16:34:58,988 DEBUG: Done: Classification +2016-08-29 16:34:58,993 DEBUG: Start: Statistic Results +2016-08-29 16:34:58,993 INFO: Accuracy :0.8 +2016-08-29 16:34:59,005 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:34:59,005 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 16:34:59,005 DEBUG: Start: Determine Train/Test split +2016-08-29 16:34:59,016 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:34:59,016 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:34:59,016 DEBUG: Done: Determine Train/Test split +2016-08-29 16:34:59,016 DEBUG: Start: Classification +2016-08-29 16:36:02,531 DEBUG: Info: Time for Classification: 63.5361440182[s] +2016-08-29 16:36:02,531 DEBUG: Done: Classification +2016-08-29 16:36:02,534 DEBUG: Start: Statistic Results +2016-08-29 16:36:02,535 INFO: Accuracy :0.761904761905 +2016-08-29 16:36:02,542 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:36:02,543 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 16:36:02,543 DEBUG: Start: Determine Train/Test split +2016-08-29 16:36:02,554 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:36:02,555 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:36:02,555 DEBUG: Done: Determine Train/Test split +2016-08-29 16:36:02,555 DEBUG: Start: Classification +2016-08-29 16:36:26,497 DEBUG: Info: Time for Classification: 23.9610130787[s] +2016-08-29 16:36:26,497 DEBUG: Done: Classification +2016-08-29 16:36:27,746 DEBUG: Start: Statistic Results +2016-08-29 16:36:27,746 INFO: Accuracy :0.895238095238 +2016-08-29 16:36:27,758 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:36:27,758 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 16:36:27,758 DEBUG: Start: Determine Train/Test split +2016-08-29 16:36:27,771 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:36:27,771 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:36:27,771 DEBUG: Done: Determine Train/Test split +2016-08-29 16:36:27,771 DEBUG: Start: Classification +2016-08-29 16:37:14,329 DEBUG: Info: Time for Classification: 46.5805008411[s] +2016-08-29 16:37:14,329 DEBUG: Done: Classification +2016-08-29 16:37:14,335 DEBUG: Start: Statistic Results +2016-08-29 16:37:14,335 INFO: Accuracy :0.92380952381 +2016-08-29 16:37:14,347 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:37:14,347 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 16:37:14,347 DEBUG: Start: Determine Train/Test split +2016-08-29 16:37:14,359 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:37:14,359 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:37:14,359 DEBUG: Done: Determine Train/Test split +2016-08-29 16:37:14,359 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-164435-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-164435-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..ac4b900a4712771b90a8aed456f3fa534bd55d8c --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-164435-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,52 @@ +2016-08-29 16:44:35,350 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:44:35,362 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:44:35,362 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:44:35,362 DEBUG: Start: Determine Train/Test split +2016-08-29 16:44:35,376 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:44:35,376 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:44:35,376 DEBUG: Done: Determine Train/Test split +2016-08-29 16:44:35,376 DEBUG: Start: Classification +2016-08-29 16:45:30,063 DEBUG: Info: Time for Classification: 54.7101948261[s] +2016-08-29 16:45:30,063 DEBUG: Done: Classification +2016-08-29 16:45:30,068 DEBUG: Start: Statistic Results +2016-08-29 16:45:30,068 INFO: Accuracy :0.838095238095 +2016-08-29 16:45:30,079 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:45:30,080 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 16:45:30,080 DEBUG: Start: Determine Train/Test split +2016-08-29 16:45:30,091 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:45:30,091 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:45:30,091 DEBUG: Done: Determine Train/Test split +2016-08-29 16:45:30,091 DEBUG: Start: Classification +2016-08-29 16:46:30,600 DEBUG: Info: Time for Classification: 60.5300340652[s] +2016-08-29 16:46:30,600 DEBUG: Done: Classification +2016-08-29 16:46:30,603 DEBUG: Start: Statistic Results +2016-08-29 16:46:30,603 INFO: Accuracy :0.828571428571 +2016-08-29 16:46:30,615 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:46:30,615 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 16:46:30,615 DEBUG: Start: Determine Train/Test split +2016-08-29 16:46:30,629 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:46:30,629 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:46:30,629 DEBUG: Done: Determine Train/Test split +2016-08-29 16:46:30,629 DEBUG: Start: Classification +2016-08-29 16:46:55,375 DEBUG: Info: Time for Classification: 24.7699568272[s] +2016-08-29 16:46:55,375 DEBUG: Done: Classification +2016-08-29 16:46:56,632 DEBUG: Start: Statistic Results +2016-08-29 16:46:56,632 INFO: Accuracy :0.847619047619 +2016-08-29 16:46:56,644 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:46:56,645 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 16:46:56,645 DEBUG: Start: Determine Train/Test split +2016-08-29 16:46:56,658 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:46:56,658 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:46:56,658 DEBUG: Done: Determine Train/Test split +2016-08-29 16:46:56,659 DEBUG: Start: Classification +2016-08-29 16:47:39,147 DEBUG: Info: Time for Classification: 42.5119411945[s] +2016-08-29 16:47:39,147 DEBUG: Done: Classification +2016-08-29 16:47:39,152 DEBUG: Start: Statistic Results +2016-08-29 16:47:39,152 INFO: Accuracy :0.885714285714 +2016-08-29 16:47:39,160 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:47:39,160 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 16:47:39,160 DEBUG: Start: Determine Train/Test split +2016-08-29 16:47:39,171 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:47:39,171 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:47:39,172 DEBUG: Done: Determine Train/Test split +2016-08-29 16:47:39,172 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-165446-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-165446-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..2933f265fc8be6a00140acc7308f8bce0acad34e --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-165446-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,52 @@ +2016-08-29 16:54:46,227 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 16:54:46,239 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:54:46,239 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 16:54:46,239 DEBUG: Start: Determine Train/Test split +2016-08-29 16:54:46,253 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:54:46,253 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:54:46,254 DEBUG: Done: Determine Train/Test split +2016-08-29 16:54:46,254 DEBUG: Start: Classification +2016-08-29 16:55:59,652 DEBUG: Info: Time for Classification: 73.4229171276[s] +2016-08-29 16:55:59,652 DEBUG: Done: Classification +2016-08-29 16:55:59,657 DEBUG: Start: Statistic Results +2016-08-29 16:55:59,657 INFO: Accuracy :0.8 +2016-08-29 16:55:59,669 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:55:59,669 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 16:55:59,669 DEBUG: Start: Determine Train/Test split +2016-08-29 16:55:59,680 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:55:59,680 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:55:59,680 DEBUG: Done: Determine Train/Test split +2016-08-29 16:55:59,680 DEBUG: Start: Classification +2016-08-29 16:56:53,704 DEBUG: Info: Time for Classification: 54.0451388359[s] +2016-08-29 16:56:53,704 DEBUG: Done: Classification +2016-08-29 16:56:53,711 DEBUG: Start: Statistic Results +2016-08-29 16:56:53,711 INFO: Accuracy :0.761904761905 +2016-08-29 16:56:53,723 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:56:53,723 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 16:56:53,723 DEBUG: Start: Determine Train/Test split +2016-08-29 16:56:53,737 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:56:53,737 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:56:53,737 DEBUG: Done: Determine Train/Test split +2016-08-29 16:56:53,737 DEBUG: Start: Classification +2016-08-29 16:57:18,331 DEBUG: Info: Time for Classification: 24.6174499989[s] +2016-08-29 16:57:18,331 DEBUG: Done: Classification +2016-08-29 16:57:19,611 DEBUG: Start: Statistic Results +2016-08-29 16:57:19,611 INFO: Accuracy :0.857142857143 +2016-08-29 16:57:19,623 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:57:19,623 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 16:57:19,624 DEBUG: Start: Determine Train/Test split +2016-08-29 16:57:19,637 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:57:19,637 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:57:19,638 DEBUG: Done: Determine Train/Test split +2016-08-29 16:57:19,638 DEBUG: Start: Classification +2016-08-29 16:58:07,785 DEBUG: Info: Time for Classification: 48.1718809605[s] +2016-08-29 16:58:07,786 DEBUG: Done: Classification +2016-08-29 16:58:07,791 DEBUG: Start: Statistic Results +2016-08-29 16:58:07,791 INFO: Accuracy :0.828571428571 +2016-08-29 16:58:07,803 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 16:58:07,803 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 16:58:07,803 DEBUG: Start: Determine Train/Test split +2016-08-29 16:58:07,816 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 16:58:07,817 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 16:58:07,817 DEBUG: Done: Determine Train/Test split +2016-08-29 16:58:07,817 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-170755-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-170755-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..0f7d7ee6382ca9b0a2c9749d5d4f974ba8b279af --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-170755-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-29 17:07:55,205 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 17:07:55,218 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:07:55,219 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 17:07:55,219 DEBUG: Start: Determine Train/Test split +2016-08-29 17:07:55,232 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:07:55,232 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:07:55,232 DEBUG: Done: Determine Train/Test split +2016-08-29 17:07:55,232 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-170857-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-170857-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..3c38718bc56638b48dbe1e693279de6d65dac608 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-170857-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,74 @@ +2016-08-29 17:08:57,904 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 17:08:57,917 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:08:57,918 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 17:08:57,918 DEBUG: Start: Determine Train/Test split +2016-08-29 17:08:57,931 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:08:57,931 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:08:57,931 DEBUG: Done: Determine Train/Test split +2016-08-29 17:08:57,931 DEBUG: Start: Classification +2016-08-29 17:10:06,685 DEBUG: Info: Time for Classification: 68.778083086[s] +2016-08-29 17:10:06,685 DEBUG: Done: Classification +2016-08-29 17:10:06,690 DEBUG: Start: Statistic Results +2016-08-29 17:10:06,691 INFO: Accuracy :0.866666666667 +2016-08-29 17:10:06,702 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:10:06,702 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 17:10:06,702 DEBUG: Start: Determine Train/Test split +2016-08-29 17:10:06,713 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:10:06,713 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:10:06,713 DEBUG: Done: Determine Train/Test split +2016-08-29 17:10:06,713 DEBUG: Start: Classification +2016-08-29 17:10:46,716 DEBUG: Info: Time for Classification: 40.023277998[s] +2016-08-29 17:10:46,716 DEBUG: Done: Classification +2016-08-29 17:10:46,719 DEBUG: Start: Statistic Results +2016-08-29 17:10:46,719 INFO: Accuracy :0.790476190476 +2016-08-29 17:10:46,731 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:10:46,731 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 17:10:46,731 DEBUG: Start: Determine Train/Test split +2016-08-29 17:10:46,744 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:10:46,744 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:10:46,744 DEBUG: Done: Determine Train/Test split +2016-08-29 17:10:46,745 DEBUG: Start: Classification +2016-08-29 17:11:01,689 DEBUG: Info: Time for Classification: 14.9678399563[s] +2016-08-29 17:11:01,689 DEBUG: Done: Classification +2016-08-29 17:11:02,981 DEBUG: Start: Statistic Results +2016-08-29 17:11:02,981 INFO: Accuracy :0.819047619048 +2016-08-29 17:11:02,994 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:11:02,994 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 17:11:02,994 DEBUG: Start: Determine Train/Test split +2016-08-29 17:11:03,008 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:11:03,008 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:11:03,008 DEBUG: Done: Determine Train/Test split +2016-08-29 17:11:03,008 DEBUG: Start: Classification +2016-08-29 17:11:46,405 DEBUG: Info: Time for Classification: 43.4208889008[s] +2016-08-29 17:11:46,405 DEBUG: Done: Classification +2016-08-29 17:11:46,412 DEBUG: Start: Statistic Results +2016-08-29 17:11:46,413 INFO: Accuracy :0.866666666667 +2016-08-29 17:11:46,422 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:11:46,422 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 17:11:46,423 DEBUG: Start: Determine Train/Test split +2016-08-29 17:11:46,435 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:11:46,435 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:11:46,435 DEBUG: Done: Determine Train/Test split +2016-08-29 17:11:46,435 DEBUG: Start: Classification +2016-08-29 17:16:45,480 DEBUG: Info: Time for Classification: 299.065301895[s] +2016-08-29 17:16:45,480 DEBUG: Done: Classification +2016-08-29 17:16:45,489 DEBUG: Start: Statistic Results +2016-08-29 17:16:45,490 INFO: Accuracy :0.885714285714 +2016-08-29 17:16:45,498 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:16:45,499 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-29 17:16:45,499 DEBUG: Start: Determine Train/Test split +2016-08-29 17:16:45,510 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:16:45,510 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:16:45,510 DEBUG: Done: Determine Train/Test split +2016-08-29 17:16:45,510 DEBUG: Start: Classification +2016-08-29 17:17:14,549 DEBUG: Info: Time for Classification: 29.0579118729[s] +2016-08-29 17:17:14,549 DEBUG: Done: Classification +2016-08-29 17:17:14,891 DEBUG: Start: Statistic Results +2016-08-29 17:17:14,891 INFO: Accuracy :0.847619047619 +2016-08-29 17:17:14,899 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:17:14,899 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-29 17:17:14,899 DEBUG: Start: Determine Train/Test split +2016-08-29 17:17:14,909 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:17:14,909 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:17:14,909 DEBUG: Done: Determine Train/Test split +2016-08-29 17:17:14,910 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-172028-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-172028-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..33c0108d6be658dd285e2e2e395d7f004c1fa0a3 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-172028-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,89 @@ +2016-08-29 17:20:28,923 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 17:20:28,935 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:20:28,936 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 17:20:28,936 DEBUG: Start: Determine Train/Test split +2016-08-29 17:20:28,949 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:20:28,949 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:20:28,949 DEBUG: Done: Determine Train/Test split +2016-08-29 17:20:28,950 DEBUG: Start: Classification +2016-08-29 17:21:38,751 DEBUG: Info: Time for Classification: 69.825948[s] +2016-08-29 17:21:38,752 DEBUG: Done: Classification +2016-08-29 17:21:38,757 DEBUG: Start: Statistic Results +2016-08-29 17:21:38,757 INFO: Accuracy :0.790476190476 +2016-08-29 17:21:38,768 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:21:38,768 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 17:21:38,768 DEBUG: Start: Determine Train/Test split +2016-08-29 17:21:38,779 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:21:38,780 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:21:38,780 DEBUG: Done: Determine Train/Test split +2016-08-29 17:21:38,780 DEBUG: Start: Classification +2016-08-29 17:22:12,472 DEBUG: Info: Time for Classification: 33.7131619453[s] +2016-08-29 17:22:12,472 DEBUG: Done: Classification +2016-08-29 17:22:12,475 DEBUG: Start: Statistic Results +2016-08-29 17:22:12,475 INFO: Accuracy :0.780952380952 +2016-08-29 17:22:12,487 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:22:12,487 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 17:22:12,487 DEBUG: Start: Determine Train/Test split +2016-08-29 17:22:12,500 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:22:12,500 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:22:12,500 DEBUG: Done: Determine Train/Test split +2016-08-29 17:22:12,501 DEBUG: Start: Classification +2016-08-29 17:22:27,403 DEBUG: Info: Time for Classification: 14.9256680012[s] +2016-08-29 17:22:27,403 DEBUG: Done: Classification +2016-08-29 17:22:28,653 DEBUG: Start: Statistic Results +2016-08-29 17:22:28,654 INFO: Accuracy :0.866666666667 +2016-08-29 17:22:28,666 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:22:28,666 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 17:22:28,666 DEBUG: Start: Determine Train/Test split +2016-08-29 17:22:28,679 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:22:28,680 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:22:28,680 DEBUG: Done: Determine Train/Test split +2016-08-29 17:22:28,680 DEBUG: Start: Classification +2016-08-29 17:23:06,935 DEBUG: Info: Time for Classification: 38.2793560028[s] +2016-08-29 17:23:06,935 DEBUG: Done: Classification +2016-08-29 17:23:06,942 DEBUG: Start: Statistic Results +2016-08-29 17:23:06,943 INFO: Accuracy :0.847619047619 +2016-08-29 17:23:06,954 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:23:06,955 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 17:23:06,955 DEBUG: Start: Determine Train/Test split +2016-08-29 17:23:06,969 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:23:06,969 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:23:06,969 DEBUG: Done: Determine Train/Test split +2016-08-29 17:23:06,969 DEBUG: Start: Classification +2016-08-29 17:27:52,404 DEBUG: Info: Time for Classification: 285.460083008[s] +2016-08-29 17:27:52,405 DEBUG: Done: Classification +2016-08-29 17:27:52,414 DEBUG: Start: Statistic Results +2016-08-29 17:27:52,414 INFO: Accuracy :0.847619047619 +2016-08-29 17:27:52,423 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:27:52,423 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-29 17:27:52,423 DEBUG: Start: Determine Train/Test split +2016-08-29 17:27:52,435 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:27:52,435 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:27:52,435 DEBUG: Done: Determine Train/Test split +2016-08-29 17:27:52,435 DEBUG: Start: Classification +2016-08-29 17:28:17,707 DEBUG: Info: Time for Classification: 25.2910339832[s] +2016-08-29 17:28:17,707 DEBUG: Done: Classification +2016-08-29 17:28:18,029 DEBUG: Start: Statistic Results +2016-08-29 17:28:18,029 INFO: Accuracy :0.866666666667 +2016-08-29 17:28:18,037 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:28:18,038 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-29 17:28:18,038 DEBUG: Start: Determine Train/Test split +2016-08-29 17:28:18,049 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:28:18,049 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:28:18,049 DEBUG: Done: Determine Train/Test split +2016-08-29 17:28:18,049 DEBUG: Start: Classification +2016-08-29 17:30:54,635 DEBUG: Info: Time for Classification: 156.604124069[s] +2016-08-29 17:30:54,635 DEBUG: Done: Classification +2016-08-29 17:30:54,996 DEBUG: Start: Statistic Results +2016-08-29 17:30:54,997 INFO: Accuracy :0.914285714286 +2016-08-29 17:30:55,005 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:30:55,005 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-29 17:30:55,005 DEBUG: Start: Determine Train/Test split +2016-08-29 17:30:55,016 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:30:55,016 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:30:55,016 DEBUG: Done: Determine Train/Test split +2016-08-29 17:30:55,017 DEBUG: Start: Classification +2016-08-29 17:31:21,638 DEBUG: Info: Time for Classification: 26.6399168968[s] +2016-08-29 17:31:21,638 DEBUG: Done: Classification +2016-08-29 17:31:21,995 DEBUG: Start: Statistic Results +2016-08-29 17:31:21,995 INFO: Accuracy :0.92380952381 diff --git a/Code/MonoMutliViewClassifiers/Results/20160829-175309-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160829-175309-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..2098ea93b3430ace0c3b90ae300bd080d0929916 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160829-175309-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,250 @@ +2016-08-29 17:53:09,721 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-29 17:53:09,741 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:53:09,741 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 17:53:09,741 DEBUG: Start: Determine Train/Test split +2016-08-29 17:53:09,769 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:53:09,769 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:53:09,769 DEBUG: Done: Determine Train/Test split +2016-08-29 17:53:09,769 DEBUG: Start: Classification +2016-08-29 17:54:18,537 DEBUG: Info: Time for Classification: 68.8128628731[s] +2016-08-29 17:54:18,537 DEBUG: Done: Classification +2016-08-29 17:54:18,542 DEBUG: Start: Statistic Results +2016-08-29 17:54:18,543 INFO: Accuracy :0.752380952381 +2016-08-29 17:54:18,563 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:54:18,563 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 17:54:18,563 DEBUG: Start: Determine Train/Test split +2016-08-29 17:54:18,574 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:54:18,574 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:54:18,575 DEBUG: Done: Determine Train/Test split +2016-08-29 17:54:18,575 DEBUG: Start: Classification +2016-08-29 17:55:01,610 DEBUG: Info: Time for Classification: 43.0636219978[s] +2016-08-29 17:55:01,610 DEBUG: Done: Classification +2016-08-29 17:55:01,613 DEBUG: Start: Statistic Results +2016-08-29 17:55:01,613 INFO: Accuracy :0.847619047619 +2016-08-29 17:55:01,623 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:55:01,623 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 17:55:01,623 DEBUG: Start: Determine Train/Test split +2016-08-29 17:55:01,637 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:55:01,637 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:55:01,637 DEBUG: Done: Determine Train/Test split +2016-08-29 17:55:01,637 DEBUG: Start: Classification +2016-08-29 17:55:17,053 DEBUG: Info: Time for Classification: 15.4375040531[s] +2016-08-29 17:55:17,053 DEBUG: Done: Classification +2016-08-29 17:55:18,349 DEBUG: Start: Statistic Results +2016-08-29 17:55:18,349 INFO: Accuracy :0.857142857143 +2016-08-29 17:55:18,371 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:55:18,371 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 17:55:18,371 DEBUG: Start: Determine Train/Test split +2016-08-29 17:55:18,391 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:55:18,392 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:55:18,392 DEBUG: Done: Determine Train/Test split +2016-08-29 17:55:18,392 DEBUG: Start: Classification +2016-08-29 17:55:46,780 DEBUG: Info: Time for Classification: 28.4254119396[s] +2016-08-29 17:55:46,780 DEBUG: Done: Classification +2016-08-29 17:55:46,784 DEBUG: Start: Statistic Results +2016-08-29 17:55:46,785 INFO: Accuracy :0.780952380952 +2016-08-29 17:55:46,803 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 17:55:46,803 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 17:55:46,803 DEBUG: Start: Determine Train/Test split +2016-08-29 17:55:46,823 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 17:55:46,823 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 17:55:46,823 DEBUG: Done: Determine Train/Test split +2016-08-29 17:55:46,823 DEBUG: Start: Classification +2016-08-29 18:00:35,467 DEBUG: Info: Time for Classification: 288.678122044[s] +2016-08-29 18:00:35,467 DEBUG: Done: Classification +2016-08-29 18:00:35,477 DEBUG: Start: Statistic Results +2016-08-29 18:00:35,478 INFO: Accuracy :0.866666666667 +2016-08-29 18:00:35,493 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:00:35,493 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-29 18:00:35,494 DEBUG: Start: Determine Train/Test split +2016-08-29 18:00:35,507 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 18:00:35,508 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 18:00:35,508 DEBUG: Done: Determine Train/Test split +2016-08-29 18:00:35,508 DEBUG: Start: Classification +2016-08-29 18:01:01,704 DEBUG: Info: Time for Classification: 26.2219488621[s] +2016-08-29 18:01:01,704 DEBUG: Done: Classification +2016-08-29 18:01:02,046 DEBUG: Start: Statistic Results +2016-08-29 18:01:02,047 INFO: Accuracy :0.87619047619 +2016-08-29 18:01:02,058 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:01:02,058 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-29 18:01:02,058 DEBUG: Start: Determine Train/Test split +2016-08-29 18:01:02,071 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 18:01:02,071 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 18:01:02,071 DEBUG: Done: Determine Train/Test split +2016-08-29 18:01:02,071 DEBUG: Start: Classification +2016-08-29 18:03:49,809 DEBUG: Info: Time for Classification: 167.760786057[s] +2016-08-29 18:03:49,810 DEBUG: Done: Classification +2016-08-29 18:03:50,168 DEBUG: Start: Statistic Results +2016-08-29 18:03:50,168 INFO: Accuracy :0.952380952381 +2016-08-29 18:03:50,180 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:03:50,180 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-29 18:03:50,180 DEBUG: Start: Determine Train/Test split +2016-08-29 18:03:50,193 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-29 18:03:50,193 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-29 18:03:50,193 DEBUG: Done: Determine Train/Test split +2016-08-29 18:03:50,193 DEBUG: Start: Classification +2016-08-29 18:04:16,487 DEBUG: Info: Time for Classification: 26.3166110516[s] +2016-08-29 18:04:16,487 DEBUG: Done: Classification +2016-08-29 18:04:16,856 DEBUG: Start: Statistic Results +2016-08-29 18:04:16,856 INFO: Accuracy :0.933333333333 +2016-08-29 18:04:16,882 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:04:16,882 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 18:04:16,883 DEBUG: Start: Determine Train/Test split +2016-08-29 18:04:16,883 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:04:16,883 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:04:16,884 DEBUG: Done: Determine Train/Test split +2016-08-29 18:04:16,884 DEBUG: Start: Classification +2016-08-29 18:04:18,942 DEBUG: Info: Time for Classification: 2.08398890495[s] +2016-08-29 18:04:18,942 DEBUG: Done: Classification +2016-08-29 18:04:18,944 DEBUG: Start: Statistic Results +2016-08-29 18:04:18,944 INFO: Accuracy :0.87619047619 +2016-08-29 18:04:18,945 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:04:18,945 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 18:04:18,945 DEBUG: Start: Determine Train/Test split +2016-08-29 18:04:18,946 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:04:18,946 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:04:18,946 DEBUG: Done: Determine Train/Test split +2016-08-29 18:04:18,946 DEBUG: Start: Classification +2016-08-29 18:04:20,134 DEBUG: Info: Time for Classification: 1.1890399456[s] +2016-08-29 18:04:20,134 DEBUG: Done: Classification +2016-08-29 18:04:20,136 DEBUG: Start: Statistic Results +2016-08-29 18:04:20,136 INFO: Accuracy :0.87619047619 +2016-08-29 18:04:20,137 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:04:20,137 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 18:04:20,138 DEBUG: Start: Determine Train/Test split +2016-08-29 18:04:20,138 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:04:20,138 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:04:20,138 DEBUG: Done: Determine Train/Test split +2016-08-29 18:04:20,138 DEBUG: Start: Classification +2016-08-29 18:04:20,749 DEBUG: Info: Time for Classification: 0.612411022186[s] +2016-08-29 18:04:20,750 DEBUG: Done: Classification +2016-08-29 18:04:20,794 DEBUG: Start: Statistic Results +2016-08-29 18:04:20,794 INFO: Accuracy :0.790476190476 +2016-08-29 18:04:20,796 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:04:20,796 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 18:04:20,796 DEBUG: Start: Determine Train/Test split +2016-08-29 18:04:20,797 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:04:20,797 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:04:20,797 DEBUG: Done: Determine Train/Test split +2016-08-29 18:04:20,797 DEBUG: Start: Classification +2016-08-29 18:04:35,959 DEBUG: Info: Time for Classification: 15.1630759239[s] +2016-08-29 18:04:35,959 DEBUG: Done: Classification +2016-08-29 18:04:35,963 DEBUG: Start: Statistic Results +2016-08-29 18:04:35,964 INFO: Accuracy :0.828571428571 +2016-08-29 18:04:35,965 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:04:35,965 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 18:04:35,965 DEBUG: Start: Determine Train/Test split +2016-08-29 18:04:35,966 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:04:35,966 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:04:35,966 DEBUG: Done: Determine Train/Test split +2016-08-29 18:04:35,966 DEBUG: Start: Classification +2016-08-29 18:04:53,803 DEBUG: Info: Time for Classification: 17.8378360271[s] +2016-08-29 18:04:53,803 DEBUG: Done: Classification +2016-08-29 18:04:53,804 DEBUG: Start: Statistic Results +2016-08-29 18:04:53,805 INFO: Accuracy :0.790476190476 +2016-08-29 18:04:53,806 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:04:53,806 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-29 18:04:53,806 DEBUG: Start: Determine Train/Test split +2016-08-29 18:04:53,807 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:04:53,807 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:04:53,807 DEBUG: Done: Determine Train/Test split +2016-08-29 18:04:53,807 DEBUG: Start: Classification +2016-08-29 18:05:05,528 DEBUG: Info: Time for Classification: 11.7219748497[s] +2016-08-29 18:05:05,528 DEBUG: Done: Classification +2016-08-29 18:05:05,535 DEBUG: Start: Statistic Results +2016-08-29 18:05:05,536 INFO: Accuracy :0.780952380952 +2016-08-29 18:05:05,537 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:05:05,537 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-29 18:05:05,537 DEBUG: Start: Determine Train/Test split +2016-08-29 18:05:05,538 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:05:05,538 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:05:05,538 DEBUG: Done: Determine Train/Test split +2016-08-29 18:05:05,538 DEBUG: Start: Classification +2016-08-29 18:05:28,522 DEBUG: Info: Time for Classification: 22.985229969[s] +2016-08-29 18:05:28,522 DEBUG: Done: Classification +2016-08-29 18:05:28,531 DEBUG: Start: Statistic Results +2016-08-29 18:05:28,531 INFO: Accuracy :0.771428571429 +2016-08-29 18:05:28,532 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:05:28,533 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-29 18:05:28,533 DEBUG: Start: Determine Train/Test split +2016-08-29 18:05:28,533 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-29 18:05:28,533 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-29 18:05:28,534 DEBUG: Done: Determine Train/Test split +2016-08-29 18:05:28,534 DEBUG: Start: Classification +2016-08-29 18:05:30,759 DEBUG: Info: Time for Classification: 2.22728586197[s] +2016-08-29 18:05:30,760 DEBUG: Done: Classification +2016-08-29 18:05:30,788 DEBUG: Start: Statistic Results +2016-08-29 18:05:30,788 INFO: Accuracy :0.695238095238 +2016-08-29 18:05:31,924 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:05:31,925 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-29 18:05:31,925 DEBUG: Start: Determine Train/Test split +2016-08-29 18:05:31,998 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:05:31,998 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:05:31,998 DEBUG: Done: Determine Train/Test split +2016-08-29 18:05:31,999 DEBUG: Start: Classification +2016-08-29 18:10:30,396 DEBUG: Info: Time for Classification: 299.606837034[s] +2016-08-29 18:10:30,397 DEBUG: Done: Classification +2016-08-29 18:10:30,408 DEBUG: Start: Statistic Results +2016-08-29 18:10:30,409 INFO: Accuracy :0.638095238095 +2016-08-29 18:10:30,542 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:10:30,542 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-29 18:10:30,543 DEBUG: Start: Determine Train/Test split +2016-08-29 18:10:30,589 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:10:30,590 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:10:30,590 DEBUG: Done: Determine Train/Test split +2016-08-29 18:10:30,590 DEBUG: Start: Classification +2016-08-29 18:13:17,645 DEBUG: Info: Time for Classification: 167.231894016[s] +2016-08-29 18:13:17,646 DEBUG: Done: Classification +2016-08-29 18:13:17,651 DEBUG: Start: Statistic Results +2016-08-29 18:13:17,652 INFO: Accuracy :0.6 +2016-08-29 18:13:17,682 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:13:17,682 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-29 18:13:17,682 DEBUG: Start: Determine Train/Test split +2016-08-29 18:13:17,716 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:13:17,716 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:13:17,716 DEBUG: Done: Determine Train/Test split +2016-08-29 18:13:17,716 DEBUG: Start: Classification +2016-08-29 18:14:05,059 DEBUG: Info: Time for Classification: 47.4056019783[s] +2016-08-29 18:14:05,059 DEBUG: Done: Classification +2016-08-29 18:14:08,685 DEBUG: Start: Statistic Results +2016-08-29 18:14:08,686 INFO: Accuracy :0.733333333333 +2016-08-29 18:14:08,719 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:14:08,719 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-29 18:14:08,719 DEBUG: Start: Determine Train/Test split +2016-08-29 18:14:08,756 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:14:08,756 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:14:08,756 DEBUG: Done: Determine Train/Test split +2016-08-29 18:14:08,756 DEBUG: Start: Classification +2016-08-29 18:15:27,068 DEBUG: Info: Time for Classification: 78.3780429363[s] +2016-08-29 18:15:27,068 DEBUG: Done: Classification +2016-08-29 18:15:27,079 DEBUG: Start: Statistic Results +2016-08-29 18:15:27,079 INFO: Accuracy :0.771428571429 +2016-08-29 18:15:27,109 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:15:27,109 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-29 18:15:27,109 DEBUG: Start: Determine Train/Test split +2016-08-29 18:15:27,142 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:15:27,143 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:15:27,143 DEBUG: Done: Determine Train/Test split +2016-08-29 18:15:27,143 DEBUG: Start: Classification +2016-08-29 18:29:35,987 DEBUG: Info: Time for Classification: 848.906258821[s] +2016-08-29 18:29:35,987 DEBUG: Done: Classification +2016-08-29 18:29:36,013 DEBUG: Start: Statistic Results +2016-08-29 18:29:36,013 INFO: Accuracy :0.657142857143 +2016-08-29 18:29:36,044 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:29:36,044 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-29 18:29:36,045 DEBUG: Start: Determine Train/Test split +2016-08-29 18:29:36,082 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:29:36,082 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:29:36,082 DEBUG: Done: Determine Train/Test split +2016-08-29 18:29:36,082 DEBUG: Start: Classification +2016-08-29 18:31:41,723 DEBUG: Info: Time for Classification: 125.707715034[s] +2016-08-29 18:31:41,723 DEBUG: Done: Classification +2016-08-29 18:31:43,162 DEBUG: Start: Statistic Results +2016-08-29 18:31:43,162 INFO: Accuracy :0.619047619048 +2016-08-29 18:31:43,194 DEBUG: ### Main Programm for Classification MonoView +2016-08-29 18:31:43,194 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-29 18:31:43,194 DEBUG: Start: Determine Train/Test split +2016-08-29 18:31:43,228 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-29 18:31:43,228 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-29 18:31:43,228 DEBUG: Done: Determine Train/Test split +2016-08-29 18:31:43,228 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-100943-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-100943-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..43a7698baf411ad9e529c467030f57a3f2e24223 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-100943-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 10:09:43,739 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-101446-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-101446-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..5bee1cc1b1eb1accebed0323cdcbea6c5f609d17 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-101446-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-30 10:14:46,438 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:14:46,474 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:14:46,474 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 10:14:46,474 DEBUG: Start: Determine Train/Test split +2016-08-30 10:14:46,502 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:14:46,502 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:14:46,503 DEBUG: Done: Determine Train/Test split +2016-08-30 10:14:46,503 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-101634-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-101634-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..556e2502fd47dc2ccc5d483405393c326bf28779 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-101634-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,327 @@ +2016-08-30 10:16:34,609 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:16:34,621 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:16:34,621 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 10:16:34,621 DEBUG: Start: Determine Train/Test split +2016-08-30 10:16:34,639 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:16:34,639 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:16:34,639 DEBUG: Done: Determine Train/Test split +2016-08-30 10:16:34,639 DEBUG: Start: Classification +2016-08-30 10:16:44,776 DEBUG: Info: Time for Classification: 10.1228818893[s] +2016-08-30 10:16:44,776 DEBUG: Done: Classification +2016-08-30 10:16:44,803 DEBUG: Start: Statistic Results +2016-08-30 10:16:44,803 INFO: Accuracy :0.8 +2016-08-30 10:16:44,815 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:16:44,815 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 10:16:44,815 DEBUG: Start: Determine Train/Test split +2016-08-30 10:16:44,827 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:16:44,827 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:16:44,827 DEBUG: Done: Determine Train/Test split +2016-08-30 10:16:44,827 DEBUG: Start: Classification +2016-08-30 10:16:54,553 DEBUG: Info: Time for Classification: 9.74853897095[s] +2016-08-30 10:16:54,553 DEBUG: Done: Classification +2016-08-30 10:16:54,556 DEBUG: Start: Statistic Results +2016-08-30 10:16:54,557 INFO: Accuracy :0.790476190476 +2016-08-30 10:16:54,566 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:16:54,566 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 10:16:54,566 DEBUG: Start: Determine Train/Test split +2016-08-30 10:16:54,578 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:16:54,578 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:16:54,578 DEBUG: Done: Determine Train/Test split +2016-08-30 10:16:54,578 DEBUG: Start: Classification +2016-08-30 10:16:57,460 DEBUG: Info: Time for Classification: 2.90179514885[s] +2016-08-30 10:16:57,460 DEBUG: Done: Classification +2016-08-30 10:16:58,781 DEBUG: Start: Statistic Results +2016-08-30 10:16:58,781 INFO: Accuracy :0.8 +2016-08-30 10:16:58,796 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:16:58,797 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 10:16:58,797 DEBUG: Start: Determine Train/Test split +2016-08-30 10:16:58,809 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:16:58,809 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:16:58,809 DEBUG: Done: Determine Train/Test split +2016-08-30 10:16:58,809 DEBUG: Start: Classification +2016-08-30 10:16:59,325 DEBUG: Info: Time for Classification: 0.53910112381[s] +2016-08-30 10:16:59,325 DEBUG: Done: Classification +2016-08-30 10:16:59,329 DEBUG: Start: Statistic Results +2016-08-30 10:16:59,330 INFO: Accuracy :0.761904761905 +2016-08-30 10:16:59,342 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:16:59,342 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 10:16:59,343 DEBUG: Start: Determine Train/Test split +2016-08-30 10:16:59,358 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:16:59,358 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:16:59,358 DEBUG: Done: Determine Train/Test split +2016-08-30 10:16:59,358 DEBUG: Start: Classification +2016-08-30 10:17:00,543 DEBUG: Info: Time for Classification: 1.21113300323[s] +2016-08-30 10:17:00,543 DEBUG: Done: Classification +2016-08-30 10:17:00,554 DEBUG: Start: Statistic Results +2016-08-30 10:17:00,554 INFO: Accuracy :0.714285714286 +2016-08-30 10:17:00,569 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:00,570 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 10:17:00,570 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:00,588 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:17:00,588 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:17:00,588 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:00,588 DEBUG: Start: Classification +2016-08-30 10:17:08,388 DEBUG: Info: Time for Classification: 7.83058905602[s] +2016-08-30 10:17:08,389 DEBUG: Done: Classification +2016-08-30 10:17:08,689 DEBUG: Start: Statistic Results +2016-08-30 10:17:08,690 INFO: Accuracy :0.87619047619 +2016-08-30 10:17:08,703 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:08,704 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 10:17:08,704 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:08,716 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:17:08,716 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:17:08,716 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:08,716 DEBUG: Start: Classification +2016-08-30 10:17:16,673 DEBUG: Info: Time for Classification: 7.98002386093[s] +2016-08-30 10:17:16,673 DEBUG: Done: Classification +2016-08-30 10:17:17,017 DEBUG: Start: Statistic Results +2016-08-30 10:17:17,017 INFO: Accuracy :0.87619047619 +2016-08-30 10:17:17,031 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:17,031 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Methyl_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-30 10:17:17,031 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:17,044 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 10:17:17,044 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 10:17:17,044 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:17,044 DEBUG: Start: Classification +2016-08-30 10:17:24,297 DEBUG: Info: Time for Classification: 7.27610015869[s] +2016-08-30 10:17:24,297 DEBUG: Done: Classification +2016-08-30 10:17:24,592 DEBUG: Start: Statistic Results +2016-08-30 10:17:24,593 INFO: Accuracy :0.866666666667 +2016-08-30 10:17:24,616 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:24,616 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 10:17:24,617 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:24,617 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:24,617 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:24,618 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:24,618 DEBUG: Start: Classification +2016-08-30 10:17:24,892 DEBUG: Info: Time for Classification: 0.294700860977[s] +2016-08-30 10:17:24,892 DEBUG: Done: Classification +2016-08-30 10:17:24,893 DEBUG: Start: Statistic Results +2016-08-30 10:17:24,894 INFO: Accuracy :0.790476190476 +2016-08-30 10:17:24,895 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:24,895 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 10:17:24,895 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:24,896 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:24,896 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:24,896 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:24,896 DEBUG: Start: Classification +2016-08-30 10:17:24,985 DEBUG: Info: Time for Classification: 0.0903129577637[s] +2016-08-30 10:17:24,985 DEBUG: Done: Classification +2016-08-30 10:17:24,987 DEBUG: Start: Statistic Results +2016-08-30 10:17:24,987 INFO: Accuracy :0.819047619048 +2016-08-30 10:17:24,988 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:24,988 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 10:17:24,988 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:24,989 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:24,989 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:24,989 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:24,989 DEBUG: Start: Classification +2016-08-30 10:17:25,103 DEBUG: Info: Time for Classification: 0.115062952042[s] +2016-08-30 10:17:25,103 DEBUG: Done: Classification +2016-08-30 10:17:25,148 DEBUG: Start: Statistic Results +2016-08-30 10:17:25,149 INFO: Accuracy :0.72380952381 +2016-08-30 10:17:25,150 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:25,150 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 10:17:25,150 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:25,151 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:25,151 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:25,151 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:25,151 DEBUG: Start: Classification +2016-08-30 10:17:25,713 DEBUG: Info: Time for Classification: 0.563421010971[s] +2016-08-30 10:17:25,713 DEBUG: Done: Classification +2016-08-30 10:17:25,717 DEBUG: Start: Statistic Results +2016-08-30 10:17:25,717 INFO: Accuracy :0.857142857143 +2016-08-30 10:17:25,719 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:25,719 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 10:17:25,719 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:25,720 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:25,720 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:25,720 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:25,720 DEBUG: Start: Classification +2016-08-30 10:17:25,800 DEBUG: Info: Time for Classification: 0.0812940597534[s] +2016-08-30 10:17:25,800 DEBUG: Done: Classification +2016-08-30 10:17:25,802 DEBUG: Start: Statistic Results +2016-08-30 10:17:25,803 INFO: Accuracy :0.666666666667 +2016-08-30 10:17:25,804 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:25,804 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 10:17:25,805 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:25,806 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:25,806 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:25,806 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:25,806 DEBUG: Start: Classification +2016-08-30 10:17:44,549 DEBUG: Info: Time for Classification: 18.7451300621[s] +2016-08-30 10:17:44,549 DEBUG: Done: Classification +2016-08-30 10:17:44,558 DEBUG: Start: Statistic Results +2016-08-30 10:17:44,558 INFO: Accuracy :0.8 +2016-08-30 10:17:44,560 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:44,560 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 10:17:44,560 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:44,561 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:44,561 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:44,561 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:44,561 DEBUG: Start: Classification +2016-08-30 10:17:44,604 DEBUG: Info: Time for Classification: 0.0441439151764[s] +2016-08-30 10:17:44,604 DEBUG: Done: Classification +2016-08-30 10:17:44,605 DEBUG: Start: Statistic Results +2016-08-30 10:17:44,606 INFO: Accuracy :0.304761904762 +2016-08-30 10:17:44,607 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:44,607 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:MiRNA__ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-30 10:17:44,607 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:44,608 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 10:17:44,608 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 10:17:44,608 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:44,608 DEBUG: Start: Classification +2016-08-30 10:17:45,263 DEBUG: Info: Time for Classification: 0.656535148621[s] +2016-08-30 10:17:45,264 DEBUG: Done: Classification +2016-08-30 10:17:45,292 DEBUG: Start: Statistic Results +2016-08-30 10:17:45,292 INFO: Accuracy :0.771428571429 +2016-08-30 10:17:46,418 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:17:46,418 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 10:17:46,419 DEBUG: Start: Determine Train/Test split +2016-08-30 10:17:46,523 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:17:46,523 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:17:46,523 DEBUG: Done: Determine Train/Test split +2016-08-30 10:17:46,523 DEBUG: Start: Classification +2016-08-30 10:18:37,100 DEBUG: Info: Time for Classification: 51.806524992[s] +2016-08-30 10:18:37,100 DEBUG: Done: Classification +2016-08-30 10:18:37,111 DEBUG: Start: Statistic Results +2016-08-30 10:18:37,111 INFO: Accuracy :0.657142857143 +2016-08-30 10:18:37,299 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:18:37,299 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 10:18:37,299 DEBUG: Start: Determine Train/Test split +2016-08-30 10:18:37,365 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:18:37,365 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:18:37,365 DEBUG: Done: Determine Train/Test split +2016-08-30 10:18:37,365 DEBUG: Start: Classification +2016-08-30 10:18:45,045 DEBUG: Info: Time for Classification: 7.92616009712[s] +2016-08-30 10:18:45,045 DEBUG: Done: Classification +2016-08-30 10:18:45,051 DEBUG: Start: Statistic Results +2016-08-30 10:18:45,051 INFO: Accuracy :0.666666666667 +2016-08-30 10:18:45,093 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:18:45,093 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 10:18:45,094 DEBUG: Start: Determine Train/Test split +2016-08-30 10:18:45,147 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:18:45,147 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:18:45,147 DEBUG: Done: Determine Train/Test split +2016-08-30 10:18:45,147 DEBUG: Start: Classification +2016-08-30 10:18:53,751 DEBUG: Info: Time for Classification: 8.69405412674[s] +2016-08-30 10:18:53,752 DEBUG: Done: Classification +2016-08-30 10:18:57,272 DEBUG: Start: Statistic Results +2016-08-30 10:18:57,272 INFO: Accuracy :0.733333333333 +2016-08-30 10:18:57,324 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:18:57,324 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 10:18:57,324 DEBUG: Start: Determine Train/Test split +2016-08-30 10:18:57,389 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:18:57,390 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:18:57,390 DEBUG: Done: Determine Train/Test split +2016-08-30 10:18:57,390 DEBUG: Start: Classification +2016-08-30 10:18:57,934 DEBUG: Info: Time for Classification: 0.645569086075[s] +2016-08-30 10:18:57,934 DEBUG: Done: Classification +2016-08-30 10:18:57,940 DEBUG: Start: Statistic Results +2016-08-30 10:18:57,940 INFO: Accuracy :0.514285714286 +2016-08-30 10:18:57,982 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:18:57,982 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 10:18:57,982 DEBUG: Start: Determine Train/Test split +2016-08-30 10:18:58,035 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:18:58,035 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:18:58,035 DEBUG: Done: Determine Train/Test split +2016-08-30 10:18:58,035 DEBUG: Start: Classification +2016-08-30 10:19:05,580 DEBUG: Info: Time for Classification: 7.63366723061[s] +2016-08-30 10:19:05,580 DEBUG: Done: Classification +2016-08-30 10:19:05,626 DEBUG: Start: Statistic Results +2016-08-30 10:19:05,626 INFO: Accuracy :0.552380952381 +2016-08-30 10:19:05,671 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:19:05,671 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 10:19:05,671 DEBUG: Start: Determine Train/Test split +2016-08-30 10:19:05,730 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:19:05,730 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:19:05,730 DEBUG: Done: Determine Train/Test split +2016-08-30 10:19:05,730 DEBUG: Start: Classification +2016-08-30 10:19:50,442 DEBUG: Info: Time for Classification: 44.8092310429[s] +2016-08-30 10:19:50,442 DEBUG: Done: Classification +2016-08-30 10:19:52,058 DEBUG: Start: Statistic Results +2016-08-30 10:19:52,058 INFO: Accuracy :0.647619047619 +2016-08-30 10:19:52,098 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:19:52,099 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 10:19:52,099 DEBUG: Start: Determine Train/Test split +2016-08-30 10:19:52,135 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:19:52,135 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:19:52,135 DEBUG: Done: Determine Train/Test split +2016-08-30 10:19:52,135 DEBUG: Start: Classification +2016-08-30 10:19:53,501 DEBUG: Info: Time for Classification: 1.43281602859[s] +2016-08-30 10:19:53,501 DEBUG: Done: Classification +2016-08-30 10:19:53,538 DEBUG: Start: Statistic Results +2016-08-30 10:19:53,538 INFO: Accuracy :0.257142857143 +2016-08-30 10:19:53,568 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:19:53,568 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:RNASeq_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-30 10:19:53,568 DEBUG: Start: Determine Train/Test split +2016-08-30 10:19:53,602 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 10:19:53,602 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 10:19:53,602 DEBUG: Done: Determine Train/Test split +2016-08-30 10:19:53,602 DEBUG: Start: Classification +2016-08-30 10:20:40,756 DEBUG: Info: Time for Classification: 47.2164580822[s] +2016-08-30 10:20:40,756 DEBUG: Done: Classification +2016-08-30 10:20:42,788 DEBUG: Start: Statistic Results +2016-08-30 10:20:42,789 INFO: Accuracy :0.761904761905 +2016-08-30 10:20:42,817 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:20:42,818 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Clinic_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 10:20:42,818 DEBUG: Start: Determine Train/Test split +2016-08-30 10:20:42,818 DEBUG: Info: Shape X_train:(242, 127), Length of y_train:242 +2016-08-30 10:20:42,818 DEBUG: Info: Shape X_test:(105, 127), Length of y_test:105 +2016-08-30 10:20:42,818 DEBUG: Done: Determine Train/Test split +2016-08-30 10:20:42,818 DEBUG: Start: Classification +2016-08-30 10:20:42,868 DEBUG: Info: Time for Classification: 0.0714671611786[s] +2016-08-30 10:20:42,869 DEBUG: Done: Classification +2016-08-30 10:20:42,870 DEBUG: Start: Statistic Results +2016-08-30 10:20:42,870 INFO: Accuracy :0.771428571429 +2016-08-30 10:20:42,871 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:20:42,871 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Clinic_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 10:20:42,872 DEBUG: Start: Determine Train/Test split +2016-08-30 10:20:42,872 DEBUG: Info: Shape X_train:(242, 127), Length of y_train:242 +2016-08-30 10:20:42,872 DEBUG: Info: Shape X_test:(105, 127), Length of y_test:105 +2016-08-30 10:20:42,872 DEBUG: Done: Determine Train/Test split +2016-08-30 10:20:42,872 DEBUG: Start: Classification +2016-08-30 10:20:42,905 DEBUG: Info: Time for Classification: 0.0336558818817[s] +2016-08-30 10:20:42,905 DEBUG: Done: Classification +2016-08-30 10:20:42,907 DEBUG: Start: Statistic Results +2016-08-30 10:20:42,907 INFO: Accuracy :0.847619047619 +2016-08-30 10:20:42,908 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:20:42,908 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Clinic_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 10:20:42,908 DEBUG: Start: Determine Train/Test split +2016-08-30 10:20:42,908 DEBUG: Info: Shape X_train:(242, 127), Length of y_train:242 +2016-08-30 10:20:42,909 DEBUG: Info: Shape X_test:(105, 127), Length of y_test:105 +2016-08-30 10:20:42,909 DEBUG: Done: Determine Train/Test split +2016-08-30 10:20:42,909 DEBUG: Start: Classification +2016-08-30 10:20:42,946 DEBUG: Info: Time for Classification: 0.0375559329987[s] +2016-08-30 10:20:42,946 DEBUG: Done: Classification +2016-08-30 10:20:42,953 DEBUG: Start: Statistic Results +2016-08-30 10:20:42,953 INFO: Accuracy :0.704761904762 +2016-08-30 10:20:42,954 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:20:42,954 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Clinic_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 10:20:42,954 DEBUG: Start: Determine Train/Test split +2016-08-30 10:20:42,955 DEBUG: Info: Shape X_train:(242, 127), Length of y_train:242 +2016-08-30 10:20:42,955 DEBUG: Info: Shape X_test:(105, 127), Length of y_test:105 +2016-08-30 10:20:42,955 DEBUG: Done: Determine Train/Test split +2016-08-30 10:20:42,955 DEBUG: Start: Classification +2016-08-30 10:20:43,489 DEBUG: Info: Time for Classification: 0.53512597084[s] +2016-08-30 10:20:43,489 DEBUG: Done: Classification +2016-08-30 10:20:43,493 DEBUG: Start: Statistic Results +2016-08-30 10:20:43,494 INFO: Accuracy :0.790476190476 +2016-08-30 10:20:43,495 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:20:43,495 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Clinic_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 10:20:43,495 DEBUG: Start: Determine Train/Test split +2016-08-30 10:20:43,495 DEBUG: Info: Shape X_train:(242, 127), Length of y_train:242 +2016-08-30 10:20:43,495 DEBUG: Info: Shape X_test:(105, 127), Length of y_test:105 +2016-08-30 10:20:43,495 DEBUG: Done: Determine Train/Test split +2016-08-30 10:20:43,495 DEBUG: Start: Classification +2016-08-30 10:20:43,539 DEBUG: Info: Time for Classification: 0.0446429252625[s] +2016-08-30 10:20:43,539 DEBUG: Done: Classification +2016-08-30 10:20:43,541 DEBUG: Start: Statistic Results +2016-08-30 10:20:43,541 INFO: Accuracy :0.609523809524 +2016-08-30 10:20:43,542 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 10:20:43,542 DEBUG: ### Classification - Database:ModifiedMultiOmic Feature:Clinic_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 10:20:43,542 DEBUG: Start: Determine Train/Test split +2016-08-30 10:20:43,543 DEBUG: Info: Shape X_train:(242, 127), Length of y_train:242 +2016-08-30 10:20:43,543 DEBUG: Info: Shape X_test:(105, 127), Length of y_test:105 +2016-08-30 10:20:43,543 DEBUG: Done: Determine Train/Test split +2016-08-30 10:20:43,543 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-102454-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-102454-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..6eb1779d63aee5b6bed7cabeb0d267f0b911ee41 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-102454-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,21 @@ +2016-08-30 10:24:54,277 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:24:54,280 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:24:54,280 INFO: ### Classification - Database : ModifiedMultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 10:24:54,280 INFO: Info: Shape of Methyl_ :(347, 25978) +2016-08-30 10:24:54,281 INFO: Info: Shape of MiRNA__ :(347, 1046) +2016-08-30 10:24:54,281 INFO: Info: Shape of RNASeq_ :(347, 73599) +2016-08-30 10:24:54,282 INFO: Info: Shape of Clinic_ :(347, 127) +2016-08-30 10:24:54,282 INFO: Done: Read Database Files +2016-08-30 10:24:54,282 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:24:54,286 INFO: Done: Determine validation split +2016-08-30 10:24:54,286 INFO: Start: Determine 5 folds +2016-08-30 10:24:54,294 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:24:54,294 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:24:54,294 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:24:54,294 INFO: Done: Determine folds +2016-08-30 10:24:54,294 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 10:24:54,294 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 10:24:54,295 DEBUG: Start: Gridsearch for DecisionTree on Methyl_ +2016-08-30 10:24:58,093 DEBUG: Info: Best Reslut : 0.515409836066 +2016-08-30 10:24:58,093 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:24:58,095 DEBUG: Start: Gridsearch for DecisionTree on MiRNA__ diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-102653-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-102653-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..79a514929c6bda0d5f17f4a40218a55a545478ce --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-102653-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,18 @@ +2016-08-30 10:26:53,326 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:26:53,329 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:26:53,330 INFO: ### Classification - Database : ModifiedMultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 10:26:53,330 INFO: Info: Shape of Methyl_ :(347, 25978) +2016-08-30 10:26:53,331 INFO: Info: Shape of MiRNA__ :(347, 1046) +2016-08-30 10:26:53,331 INFO: Info: Shape of RNASeq_ :(347, 73599) +2016-08-30 10:26:53,332 INFO: Info: Shape of Clinic_ :(347, 127) +2016-08-30 10:26:53,332 INFO: Done: Read Database Files +2016-08-30 10:26:53,332 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:26:53,338 INFO: Done: Determine validation split +2016-08-30 10:26:53,338 INFO: Start: Determine 5 folds +2016-08-30 10:26:53,349 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:26:53,349 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:26:53,349 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:26:53,349 INFO: Done: Determine folds +2016-08-30 10:26:53,350 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 10:26:53,350 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 10:26:53,350 DEBUG: Start: Gridsearch for DecisionTree on Methyl_ diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-102706-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-102706-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..b2f8bb9eef38997d79d4bfa2c70331a45d44ab1f --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-102706-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,36 @@ +2016-08-30 10:27:06,826 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:27:06,829 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:27:06,829 INFO: ### Classification - Database : ModifiedMultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 10:27:06,829 INFO: Info: Shape of Methyl_ :(347, 25978) +2016-08-30 10:27:06,830 INFO: Info: Shape of MiRNA__ :(347, 1046) +2016-08-30 10:27:06,830 INFO: Info: Shape of RNASeq_ :(347, 73599) +2016-08-30 10:27:06,830 INFO: Info: Shape of Clinic_ :(347, 127) +2016-08-30 10:27:06,831 INFO: Done: Read Database Files +2016-08-30 10:27:06,831 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:27:06,834 INFO: Done: Determine validation split +2016-08-30 10:27:06,834 INFO: Start: Determine 5 folds +2016-08-30 10:27:06,842 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:27:06,842 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:27:06,842 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:27:06,842 INFO: Done: Determine folds +2016-08-30 10:27:06,842 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 10:27:06,842 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 10:27:06,843 DEBUG: Start: Gridsearch for DecisionTree on Methyl_ +2016-08-30 10:27:10,624 DEBUG: Info: Best Reslut : 0.508606557377 +2016-08-30 10:27:10,626 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:27:10,626 DEBUG: Start: Gridsearch for DecisionTree on MiRNA__ +2016-08-30 10:27:12,016 DEBUG: Info: Best Reslut : 0.514262295082 +2016-08-30 10:27:12,016 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:27:12,017 DEBUG: Start: Gridsearch for DecisionTree on RNASeq_ +2016-08-30 10:27:19,883 DEBUG: Info: Best Reslut : 0.505 +2016-08-30 10:27:19,886 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:27:19,886 DEBUG: Start: Gridsearch for DecisionTree on Clinic_ +2016-08-30 10:27:21,594 DEBUG: Info: Best Reslut : 0.58762295082 +2016-08-30 10:27:21,594 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:27:21,594 INFO: Done: Gridsearching best settings for monoview classifiers +2016-08-30 10:27:21,595 INFO: Start: Fold number 1 +2016-08-30 10:27:23,833 DEBUG: Start: Iteration 1 +2016-08-30 10:27:23,868 DEBUG: View 0 : 0.566820276498 +2016-08-30 10:27:23,878 DEBUG: View 1 : 0.63133640553 +2016-08-30 10:27:23,931 DEBUG: View 2 : 0.63133640553 +2016-08-30 10:27:23,943 DEBUG: View 3 : 0.36866359447 diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-102823-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-102823-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..f52649aee1816937cd7ca59254c3a13cccbf553f --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-102823-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-ModifiedMultiOmic-LOG.log @@ -0,0 +1,18 @@ +2016-08-30 10:28:23,860 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:28:23,862 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:28:23,862 INFO: ### Classification - Database : ModifiedMultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 10:28:23,863 INFO: Info: Shape of Methyl_ :(347, 25978) +2016-08-30 10:28:23,863 INFO: Info: Shape of MiRNA__ :(347, 1046) +2016-08-30 10:28:23,864 INFO: Info: Shape of RNASeq_ :(347, 73599) +2016-08-30 10:28:23,864 INFO: Info: Shape of Clinic_ :(347, 127) +2016-08-30 10:28:23,864 INFO: Done: Read Database Files +2016-08-30 10:28:23,864 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:28:23,868 INFO: Done: Determine validation split +2016-08-30 10:28:23,868 INFO: Start: Determine 5 folds +2016-08-30 10:28:23,876 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:28:23,876 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:28:23,876 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:28:23,876 INFO: Done: Determine folds +2016-08-30 10:28:23,876 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 10:28:23,876 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 10:28:23,877 DEBUG: Start: Gridsearch for DecisionTree on Methyl_ diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-102929-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-102929-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..1a0f4d80d74e6b61bfac60ef1b0ba951bea72ca7 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-102929-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,351 @@ +2016-08-30 10:29:29,871 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:29:29,873 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:29:29,874 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 10:29:29,874 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 10:29:29,875 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 10:29:29,875 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 10:29:29,876 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 10:29:29,876 INFO: Done: Read Database Files +2016-08-30 10:29:29,876 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:29:29,880 INFO: Done: Determine validation split +2016-08-30 10:29:29,881 INFO: Start: Determine 5 folds +2016-08-30 10:29:29,888 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:29:29,888 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:29:29,889 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:29:29,889 INFO: Done: Determine folds +2016-08-30 10:29:29,889 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 10:29:29,889 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 10:29:29,889 DEBUG: Start: Gridsearch for DecisionTree on Methyl +2016-08-30 10:29:33,972 DEBUG: Info: Best Reslut : 0.542131147541 +2016-08-30 10:29:33,973 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:29:33,973 DEBUG: Start: Gridsearch for DecisionTree on MiRNA_ +2016-08-30 10:29:35,385 DEBUG: Info: Best Reslut : 0.518278688525 +2016-08-30 10:29:35,385 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:29:35,386 DEBUG: Start: Gridsearch for DecisionTree on RANSeq +2016-08-30 10:29:44,374 DEBUG: Info: Best Reslut : 0.530163934426 +2016-08-30 10:29:44,377 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:29:44,378 DEBUG: Start: Gridsearch for DecisionTree on Clinic +2016-08-30 10:29:46,222 DEBUG: Info: Best Reslut : 0.564016393443 +2016-08-30 10:29:46,222 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:29:46,222 INFO: Done: Gridsearching best settings for monoview classifiers +2016-08-30 10:29:46,222 INFO: Start: Fold number 1 +2016-08-30 10:29:48,537 DEBUG: Start: Iteration 1 +2016-08-30 10:29:48,675 DEBUG: View 0 : 0.617224880383 +2016-08-30 10:29:48,685 DEBUG: View 1 : 0.617224880383 +2016-08-30 10:29:49,169 DEBUG: View 2 : 0.516746411483 +2016-08-30 10:29:49,180 DEBUG: View 3 : 0.483253588517 +2016-08-30 10:29:49,237 DEBUG: Best view : Methyl +2016-08-30 10:29:49,338 DEBUG: Start: Iteration 2 +2016-08-30 10:29:49,359 DEBUG: View 0 : 0.459330143541 +2016-08-30 10:29:49,369 DEBUG: View 1 : 0.454545454545 +2016-08-30 10:29:49,429 DEBUG: View 2 : 0.607655502392 +2016-08-30 10:29:49,440 DEBUG: View 3 : 0.497607655502 +2016-08-30 10:29:49,513 DEBUG: Best view : RANSeq +2016-08-30 10:29:49,721 DEBUG: Start: Iteration 3 +2016-08-30 10:29:49,741 DEBUG: View 0 : 0.473684210526 +2016-08-30 10:29:49,751 DEBUG: View 1 : 0.55023923445 +2016-08-30 10:29:49,811 DEBUG: View 2 : 0.421052631579 +2016-08-30 10:29:49,823 DEBUG: View 3 : 0.516746411483 +2016-08-30 10:29:49,896 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:50,175 DEBUG: Start: Iteration 4 +2016-08-30 10:29:50,196 DEBUG: View 0 : 0.626794258373 +2016-08-30 10:29:50,206 DEBUG: View 1 : 0.631578947368 +2016-08-30 10:29:50,266 DEBUG: View 2 : 0.488038277512 +2016-08-30 10:29:50,279 DEBUG: View 3 : 0.535885167464 +2016-08-30 10:29:50,356 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:50,716 DEBUG: Start: Iteration 5 +2016-08-30 10:29:50,737 DEBUG: View 0 : 0.516746411483 +2016-08-30 10:29:50,746 DEBUG: View 1 : 0.416267942584 +2016-08-30 10:29:50,817 DEBUG: View 2 : 0.397129186603 +2016-08-30 10:29:50,829 DEBUG: View 3 : 0.602870813397 +2016-08-30 10:29:50,907 DEBUG: Best view : Clinic +2016-08-30 10:29:51,341 DEBUG: Start: Iteration 6 +2016-08-30 10:29:51,363 DEBUG: View 0 : 0.416267942584 +2016-08-30 10:29:51,373 DEBUG: View 1 : 0.717703349282 +2016-08-30 10:29:51,436 DEBUG: View 2 : 0.545454545455 +2016-08-30 10:29:51,448 DEBUG: View 3 : 0.583732057416 +2016-08-30 10:29:51,532 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:52,048 DEBUG: Start: Iteration 7 +2016-08-30 10:29:52,068 DEBUG: View 0 : 0.344497607656 +2016-08-30 10:29:52,078 DEBUG: View 1 : 0.645933014354 +2016-08-30 10:29:52,136 DEBUG: View 2 : 0.502392344498 +2016-08-30 10:29:52,147 DEBUG: View 3 : 0.507177033493 +2016-08-30 10:29:52,234 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:52,819 DEBUG: Start: Iteration 8 +2016-08-30 10:29:52,840 DEBUG: View 0 : 0.421052631579 +2016-08-30 10:29:52,850 DEBUG: View 1 : 0.478468899522 +2016-08-30 10:29:52,909 DEBUG: View 2 : 0.545454545455 +2016-08-30 10:29:52,920 DEBUG: View 3 : 0.602870813397 +2016-08-30 10:29:53,010 DEBUG: Best view : Clinic +2016-08-30 10:29:53,681 DEBUG: Start: Iteration 9 +2016-08-30 10:29:53,701 DEBUG: View 0 : 0.488038277512 +2016-08-30 10:29:53,711 DEBUG: View 1 : 0.406698564593 +2016-08-30 10:29:53,769 DEBUG: View 2 : 0.540669856459 +2016-08-30 10:29:53,781 DEBUG: View 3 : 0.488038277512 +2016-08-30 10:29:53,879 DEBUG: Best view : RANSeq +2016-08-30 10:29:54,639 DEBUG: Start: Iteration 10 +2016-08-30 10:29:54,659 DEBUG: View 0 : 0.430622009569 +2016-08-30 10:29:54,669 DEBUG: View 1 : 0.674641148325 +2016-08-30 10:29:54,729 DEBUG: View 2 : 0.655502392344 +2016-08-30 10:29:54,742 DEBUG: View 3 : 0.382775119617 +2016-08-30 10:29:54,840 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:55,684 DEBUG: Start: Iteration 11 +2016-08-30 10:29:55,705 DEBUG: View 0 : 0.397129186603 +2016-08-30 10:29:55,715 DEBUG: View 1 : 0.626794258373 +2016-08-30 10:29:55,776 DEBUG: View 2 : 0.564593301435 +2016-08-30 10:29:55,789 DEBUG: View 3 : 0.430622009569 +2016-08-30 10:29:55,893 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:56,812 DEBUG: Start: Iteration 12 +2016-08-30 10:29:56,832 DEBUG: View 0 : 0.645933014354 +2016-08-30 10:29:56,842 DEBUG: View 1 : 0.392344497608 +2016-08-30 10:29:56,901 DEBUG: View 2 : 0.526315789474 +2016-08-30 10:29:56,912 DEBUG: View 3 : 0.598086124402 +2016-08-30 10:29:57,017 DEBUG: Best view : Methyl +2016-08-30 10:29:58,014 DEBUG: Start: Iteration 13 +2016-08-30 10:29:58,035 DEBUG: View 0 : 0.679425837321 +2016-08-30 10:29:58,046 DEBUG: View 1 : 0.708133971292 +2016-08-30 10:29:58,104 DEBUG: View 2 : 0.55023923445 +2016-08-30 10:29:58,115 DEBUG: View 3 : 0.574162679426 +2016-08-30 10:29:58,223 DEBUG: Best view : MiRNA_ +2016-08-30 10:29:59,301 DEBUG: Start: Iteration 14 +2016-08-30 10:29:59,322 DEBUG: View 0 : 0.444976076555 +2016-08-30 10:29:59,332 DEBUG: View 1 : 0.693779904306 +2016-08-30 10:29:59,391 DEBUG: View 2 : 0.531100478469 +2016-08-30 10:29:59,402 DEBUG: View 3 : 0.574162679426 +2016-08-30 10:29:59,512 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:00,668 DEBUG: Start: Iteration 15 +2016-08-30 10:30:00,688 DEBUG: View 0 : 0.535885167464 +2016-08-30 10:30:00,698 DEBUG: View 1 : 0.574162679426 +2016-08-30 10:30:00,758 DEBUG: View 2 : 0.569377990431 +2016-08-30 10:30:00,770 DEBUG: View 3 : 0.44976076555 +2016-08-30 10:30:00,886 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:02,118 DEBUG: Start: Iteration 16 +2016-08-30 10:30:02,138 DEBUG: View 0 : 0.626794258373 +2016-08-30 10:30:02,148 DEBUG: View 1 : 0.598086124402 +2016-08-30 10:30:02,207 DEBUG: View 2 : 0.488038277512 +2016-08-30 10:30:02,219 DEBUG: View 3 : 0.526315789474 +2016-08-30 10:30:02,338 DEBUG: Best view : Methyl +2016-08-30 10:30:03,646 DEBUG: Start: Iteration 17 +2016-08-30 10:30:03,667 DEBUG: View 0 : 0.684210526316 +2016-08-30 10:30:03,676 DEBUG: View 1 : 0.583732057416 +2016-08-30 10:30:03,736 DEBUG: View 2 : 0.473684210526 +2016-08-30 10:30:03,747 DEBUG: View 3 : 0.502392344498 +2016-08-30 10:30:03,871 DEBUG: Best view : Methyl +2016-08-30 10:30:05,259 DEBUG: Start: Iteration 18 +2016-08-30 10:30:05,279 DEBUG: View 0 : 0.535885167464 +2016-08-30 10:30:05,290 DEBUG: View 1 : 0.473684210526 +2016-08-30 10:30:05,350 DEBUG: View 2 : 0.464114832536 +2016-08-30 10:30:05,362 DEBUG: View 3 : 0.574162679426 +2016-08-30 10:30:05,488 DEBUG: Best view : Clinic +2016-08-30 10:30:06,969 DEBUG: Start: Iteration 19 +2016-08-30 10:30:06,991 DEBUG: View 0 : 0.492822966507 +2016-08-30 10:30:07,002 DEBUG: View 1 : 0.435406698565 +2016-08-30 10:30:07,061 DEBUG: View 2 : 0.488038277512 +2016-08-30 10:30:07,073 DEBUG: View 3 : 0.535885167464 +2016-08-30 10:30:07,200 DEBUG: Best view : Clinic +2016-08-30 10:30:08,747 DEBUG: Start: Iteration 20 +2016-08-30 10:30:08,767 DEBUG: View 0 : 0.55023923445 +2016-08-30 10:30:08,777 DEBUG: View 1 : 0.693779904306 +2016-08-30 10:30:08,836 DEBUG: View 2 : 0.569377990431 +2016-08-30 10:30:08,847 DEBUG: View 3 : 0.531100478469 +2016-08-30 10:30:08,979 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:10,609 DEBUG: Start: Iteration 21 +2016-08-30 10:30:10,629 DEBUG: View 0 : 0.583732057416 +2016-08-30 10:30:10,639 DEBUG: View 1 : 0.650717703349 +2016-08-30 10:30:10,698 DEBUG: View 2 : 0.397129186603 +2016-08-30 10:30:10,710 DEBUG: View 3 : 0.478468899522 +2016-08-30 10:30:10,854 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:12,610 DEBUG: Start: Iteration 22 +2016-08-30 10:30:12,630 DEBUG: View 0 : 0.765550239234 +2016-08-30 10:30:12,640 DEBUG: View 1 : 0.44019138756 +2016-08-30 10:30:12,700 DEBUG: View 2 : 0.354066985646 +2016-08-30 10:30:12,712 DEBUG: View 3 : 0.526315789474 +2016-08-30 10:30:12,853 DEBUG: Best view : Methyl +2016-08-30 10:30:14,721 DEBUG: Start: Iteration 23 +2016-08-30 10:30:14,742 DEBUG: View 0 : 0.497607655502 +2016-08-30 10:30:14,752 DEBUG: View 1 : 0.593301435407 +2016-08-30 10:30:14,811 DEBUG: View 2 : 0.521531100478 +2016-08-30 10:30:14,823 DEBUG: View 3 : 0.521531100478 +2016-08-30 10:30:14,970 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:16,861 DEBUG: Start: Iteration 24 +2016-08-30 10:30:16,881 DEBUG: View 0 : 0.492822966507 +2016-08-30 10:30:16,891 DEBUG: View 1 : 0.416267942584 +2016-08-30 10:30:16,951 DEBUG: View 2 : 0.545454545455 +2016-08-30 10:30:16,963 DEBUG: View 3 : 0.612440191388 +2016-08-30 10:30:17,109 DEBUG: Best view : Clinic +2016-08-30 10:30:19,363 DEBUG: Start: Iteration 25 +2016-08-30 10:30:19,384 DEBUG: View 0 : 0.511961722488 +2016-08-30 10:30:19,394 DEBUG: View 1 : 0.425837320574 +2016-08-30 10:30:19,455 DEBUG: View 2 : 0.540669856459 +2016-08-30 10:30:19,467 DEBUG: View 3 : 0.401913875598 +2016-08-30 10:30:19,614 DEBUG: Best view : RANSeq +2016-08-30 10:30:21,662 DEBUG: Start: Iteration 26 +2016-08-30 10:30:21,683 DEBUG: View 0 : 0.411483253589 +2016-08-30 10:30:21,692 DEBUG: View 1 : 0.425837320574 +2016-08-30 10:30:21,752 DEBUG: View 2 : 0.454545454545 +2016-08-30 10:30:21,764 DEBUG: View 3 : 0.521531100478 +2016-08-30 10:30:21,917 DEBUG: Best view : Clinic +2016-08-30 10:30:24,029 DEBUG: Start: Iteration 27 +2016-08-30 10:30:24,049 DEBUG: View 0 : 0.598086124402 +2016-08-30 10:30:24,059 DEBUG: View 1 : 0.674641148325 +2016-08-30 10:30:24,119 DEBUG: View 2 : 0.665071770335 +2016-08-30 10:30:24,131 DEBUG: View 3 : 0.55980861244 +2016-08-30 10:30:24,288 DEBUG: Best view : RANSeq +2016-08-30 10:30:26,547 DEBUG: Start: Iteration 28 +2016-08-30 10:30:26,567 DEBUG: View 0 : 0.44019138756 +2016-08-30 10:30:26,577 DEBUG: View 1 : 0.430622009569 +2016-08-30 10:30:26,637 DEBUG: View 2 : 0.44976076555 +2016-08-30 10:30:26,649 DEBUG: View 3 : 0.387559808612 +2016-08-30 10:30:26,650 WARNING: WARNING: All bad for iteration 27 +2016-08-30 10:30:26,813 DEBUG: Best view : RANSeq +2016-08-30 10:30:29,246 DEBUG: Start: Iteration 29 +2016-08-30 10:30:29,269 DEBUG: View 0 : 0.492822966507 +2016-08-30 10:30:29,279 DEBUG: View 1 : 0.33971291866 +2016-08-30 10:30:29,348 DEBUG: View 2 : 0.602870813397 +2016-08-30 10:30:29,362 DEBUG: View 3 : 0.478468899522 +2016-08-30 10:30:29,536 DEBUG: Best view : RANSeq +2016-08-30 10:30:32,153 DEBUG: Start: Iteration 30 +2016-08-30 10:30:32,173 DEBUG: View 0 : 0.55980861244 +2016-08-30 10:30:32,183 DEBUG: View 1 : 0.679425837321 +2016-08-30 10:30:32,244 DEBUG: View 2 : 0.387559808612 +2016-08-30 10:30:32,256 DEBUG: View 3 : 0.459330143541 +2016-08-30 10:30:32,421 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:34,947 DEBUG: Start: Iteration 31 +2016-08-30 10:30:34,969 DEBUG: View 0 : 0.622009569378 +2016-08-30 10:30:34,980 DEBUG: View 1 : 0.746411483254 +2016-08-30 10:30:35,035 DEBUG: View 2 : 0.564593301435 +2016-08-30 10:30:35,046 DEBUG: View 3 : 0.468899521531 +2016-08-30 10:30:35,215 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:37,816 DEBUG: Start: Iteration 32 +2016-08-30 10:30:37,837 DEBUG: View 0 : 0.373205741627 +2016-08-30 10:30:37,847 DEBUG: View 1 : 0.641148325359 +2016-08-30 10:30:37,905 DEBUG: View 2 : 0.574162679426 +2016-08-30 10:30:37,915 DEBUG: View 3 : 0.574162679426 +2016-08-30 10:30:38,088 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:40,837 DEBUG: Start: Iteration 33 +2016-08-30 10:30:40,859 DEBUG: View 0 : 0.468899521531 +2016-08-30 10:30:40,869 DEBUG: View 1 : 0.545454545455 +2016-08-30 10:30:40,915 DEBUG: View 2 : 0.397129186603 +2016-08-30 10:30:40,926 DEBUG: View 3 : 0.382775119617 +2016-08-30 10:30:41,105 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:44,011 DEBUG: Start: Iteration 34 +2016-08-30 10:30:44,035 DEBUG: View 0 : 0.468899521531 +2016-08-30 10:30:44,046 DEBUG: View 1 : 0.66985645933 +2016-08-30 10:30:44,095 DEBUG: View 2 : 0.526315789474 +2016-08-30 10:30:44,105 DEBUG: View 3 : 0.531100478469 +2016-08-30 10:30:44,305 DEBUG: Best view : MiRNA_ +2016-08-30 10:30:47,140 DEBUG: Start: Iteration 35 +2016-08-30 10:30:47,160 DEBUG: View 0 : 0.483253588517 +2016-08-30 10:30:47,170 DEBUG: View 1 : 0.497607655502 +2016-08-30 10:30:47,215 DEBUG: View 2 : 0.564593301435 +2016-08-30 10:30:47,224 DEBUG: View 3 : 0.430622009569 +2016-08-30 10:30:47,405 DEBUG: Best view : RANSeq +2016-08-30 10:30:50,293 DEBUG: Start: Iteration 36 +2016-08-30 10:30:50,314 DEBUG: View 0 : 0.483253588517 +2016-08-30 10:30:50,324 DEBUG: View 1 : 0.507177033493 +2016-08-30 10:30:50,369 DEBUG: View 2 : 0.521531100478 +2016-08-30 10:30:50,379 DEBUG: View 3 : 0.569377990431 +2016-08-30 10:30:50,567 DEBUG: Best view : Clinic +2016-08-30 10:30:53,529 DEBUG: Start: Iteration 37 +2016-08-30 10:30:53,549 DEBUG: View 0 : 0.66028708134 +2016-08-30 10:30:53,559 DEBUG: View 1 : 0.636363636364 +2016-08-30 10:30:53,605 DEBUG: View 2 : 0.507177033493 +2016-08-30 10:30:53,615 DEBUG: View 3 : 0.564593301435 +2016-08-30 10:30:53,807 DEBUG: Best view : Methyl +2016-08-30 10:30:56,845 DEBUG: Start: Iteration 38 +2016-08-30 10:30:56,866 DEBUG: View 0 : 0.444976076555 +2016-08-30 10:30:56,876 DEBUG: View 1 : 0.607655502392 +2016-08-30 10:30:56,921 DEBUG: View 2 : 0.535885167464 +2016-08-30 10:30:56,930 DEBUG: View 3 : 0.454545454545 +2016-08-30 10:30:57,121 DEBUG: Best view : MiRNA_ +2016-08-30 10:31:00,227 DEBUG: Start: Iteration 39 +2016-08-30 10:31:00,247 DEBUG: View 0 : 0.708133971292 +2016-08-30 10:31:00,257 DEBUG: View 1 : 0.401913875598 +2016-08-30 10:31:00,302 DEBUG: View 2 : 0.502392344498 +2016-08-30 10:31:00,311 DEBUG: View 3 : 0.483253588517 +2016-08-30 10:31:00,507 DEBUG: Best view : Methyl +2016-08-30 10:31:03,715 DEBUG: Start: Iteration 40 +2016-08-30 10:31:03,736 DEBUG: View 0 : 0.387559808612 +2016-08-30 10:31:03,748 DEBUG: View 1 : 0.425837320574 +2016-08-30 10:31:03,801 DEBUG: View 2 : 0.392344497608 +2016-08-30 10:31:03,811 DEBUG: View 3 : 0.531100478469 +2016-08-30 10:31:04,030 DEBUG: Best view : Clinic +2016-08-30 10:31:07,435 DEBUG: Start: Iteration 41 +2016-08-30 10:31:07,455 DEBUG: View 0 : 0.468899521531 +2016-08-30 10:31:07,465 DEBUG: View 1 : 0.55980861244 +2016-08-30 10:31:07,509 DEBUG: View 2 : 0.397129186603 +2016-08-30 10:31:07,518 DEBUG: View 3 : 0.430622009569 +2016-08-30 10:31:07,725 DEBUG: Best view : MiRNA_ +2016-08-30 10:31:11,097 DEBUG: Start: Iteration 42 +2016-08-30 10:31:11,117 DEBUG: View 0 : 0.732057416268 +2016-08-30 10:31:11,127 DEBUG: View 1 : 0.665071770335 +2016-08-30 10:31:11,172 DEBUG: View 2 : 0.583732057416 +2016-08-30 10:31:11,181 DEBUG: View 3 : 0.401913875598 +2016-08-30 10:31:11,385 DEBUG: Best view : Methyl +2016-08-30 10:31:14,868 DEBUG: Start: Iteration 43 +2016-08-30 10:31:14,889 DEBUG: View 0 : 0.483253588517 +2016-08-30 10:31:14,899 DEBUG: View 1 : 0.349282296651 +2016-08-30 10:31:14,949 DEBUG: View 2 : 0.444976076555 +2016-08-30 10:31:14,958 DEBUG: View 3 : 0.430622009569 +2016-08-30 10:31:14,959 WARNING: WARNING: All bad for iteration 42 +2016-08-30 10:31:15,170 DEBUG: Best view : Methyl +2016-08-30 10:31:18,860 DEBUG: Start: Iteration 44 +2016-08-30 10:31:18,885 DEBUG: View 0 : 0.382775119617 +2016-08-30 10:31:18,897 DEBUG: View 1 : 0.454545454545 +2016-08-30 10:31:18,951 DEBUG: View 2 : 0.507177033493 +2016-08-30 10:31:18,962 DEBUG: View 3 : 0.507177033493 +2016-08-30 10:31:19,206 DEBUG: Best view : RANSeq +2016-08-30 10:31:22,894 DEBUG: Start: Iteration 45 +2016-08-30 10:31:22,915 DEBUG: View 0 : 0.44976076555 +2016-08-30 10:31:22,924 DEBUG: View 1 : 0.626794258373 +2016-08-30 10:31:22,970 DEBUG: View 2 : 0.545454545455 +2016-08-30 10:31:22,979 DEBUG: View 3 : 0.569377990431 +2016-08-30 10:31:23,195 DEBUG: Best view : MiRNA_ +2016-08-30 10:31:26,915 DEBUG: Start: Iteration 46 +2016-08-30 10:31:26,935 DEBUG: View 0 : 0.540669856459 +2016-08-30 10:31:26,946 DEBUG: View 1 : 0.516746411483 +2016-08-30 10:31:26,998 DEBUG: View 2 : 0.526315789474 +2016-08-30 10:31:27,008 DEBUG: View 3 : 0.622009569378 +2016-08-30 10:31:27,231 DEBUG: Best view : Clinic +2016-08-30 10:31:31,037 DEBUG: Start: Iteration 47 +2016-08-30 10:31:31,058 DEBUG: View 0 : 0.535885167464 +2016-08-30 10:31:31,068 DEBUG: View 1 : 0.435406698565 +2016-08-30 10:31:31,112 DEBUG: View 2 : 0.55023923445 +2016-08-30 10:31:31,122 DEBUG: View 3 : 0.602870813397 +2016-08-30 10:31:31,345 DEBUG: Best view : Clinic +2016-08-30 10:31:35,202 DEBUG: Start: Iteration 48 +2016-08-30 10:31:35,223 DEBUG: View 0 : 0.492822966507 +2016-08-30 10:31:35,233 DEBUG: View 1 : 0.593301435407 +2016-08-30 10:31:35,279 DEBUG: View 2 : 0.545454545455 +2016-08-30 10:31:35,289 DEBUG: View 3 : 0.602870813397 +2016-08-30 10:31:35,516 DEBUG: Best view : Clinic +2016-08-30 10:31:39,436 DEBUG: Start: Iteration 49 +2016-08-30 10:31:39,456 DEBUG: View 0 : 0.588516746411 +2016-08-30 10:31:39,466 DEBUG: View 1 : 0.55023923445 +2016-08-30 10:31:39,511 DEBUG: View 2 : 0.464114832536 +2016-08-30 10:31:39,520 DEBUG: View 3 : 0.421052631579 +2016-08-30 10:31:39,750 DEBUG: Best view : Methyl +2016-08-30 10:31:43,781 DEBUG: Start: Iteration 50 +2016-08-30 10:31:43,804 DEBUG: View 0 : 0.430622009569 +2016-08-30 10:31:43,814 DEBUG: View 1 : 0.526315789474 +2016-08-30 10:31:43,862 DEBUG: View 2 : 0.535885167464 +2016-08-30 10:31:43,871 DEBUG: View 3 : 0.421052631579 +2016-08-30 10:31:44,112 DEBUG: Best view : MiRNA_ +2016-08-30 10:31:48,221 DEBUG: Start: Iteration 51 +2016-08-30 10:31:48,241 DEBUG: View 0 : 0.636363636364 +2016-08-30 10:31:48,251 DEBUG: View 1 : 0.612440191388 +2016-08-30 10:31:48,296 DEBUG: View 2 : 0.55980861244 +2016-08-30 10:31:48,306 DEBUG: View 3 : 0.593301435407 +2016-08-30 10:31:48,543 DEBUG: Best view : Methyl +2016-08-30 10:31:52,711 DEBUG: Start: Iteration 52 +2016-08-30 10:31:52,732 DEBUG: View 0 : 0.535885167464 +2016-08-30 10:31:52,742 DEBUG: View 1 : 0.421052631579 +2016-08-30 10:31:52,787 DEBUG: View 2 : 0.535885167464 +2016-08-30 10:31:52,797 DEBUG: View 3 : 0.540669856459 +2016-08-30 10:31:53,039 DEBUG: Best view : RANSeq +2016-08-30 10:31:57,458 DEBUG: Start: Iteration 53 +2016-08-30 10:31:57,479 DEBUG: View 0 : 0.488038277512 +2016-08-30 10:31:57,489 DEBUG: View 1 : 0.622009569378 +2016-08-30 10:31:57,541 DEBUG: View 2 : 0.622009569378 +2016-08-30 10:31:57,551 DEBUG: View 3 : 0.411483253589 +2016-08-30 10:31:57,807 DEBUG: Best view : RANSeq diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-103201-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-103201-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e8f6ff97999b044e66696e197d14caf856257386 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-103201-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,411 @@ +2016-08-30 10:32:01,666 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:32:01,668 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:32:01,668 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 10:32:01,668 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 10:32:01,669 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 10:32:01,669 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 10:32:01,670 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 10:32:01,670 INFO: Done: Read Database Files +2016-08-30 10:32:01,670 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:32:01,674 INFO: Done: Determine validation split +2016-08-30 10:32:01,674 INFO: Start: Determine 5 folds +2016-08-30 10:32:01,682 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:32:01,682 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:32:01,682 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:32:01,682 INFO: Done: Determine folds +2016-08-30 10:32:01,682 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 10:32:01,682 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 10:32:01,683 DEBUG: Start: Gridsearch for DecisionTree on Methyl +2016-08-30 10:32:05,444 DEBUG: Info: Best Reslut : 0.538196721311 +2016-08-30 10:32:05,445 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:32:05,445 DEBUG: Start: Gridsearch for DecisionTree on MiRNA_ +2016-08-30 10:32:06,789 DEBUG: Info: Best Reslut : 0.54737704918 +2016-08-30 10:32:06,789 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:32:06,790 DEBUG: Start: Gridsearch for DecisionTree on RANSeq +2016-08-30 10:32:14,632 DEBUG: Info: Best Reslut : 0.509016393443 +2016-08-30 10:32:14,632 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:32:14,633 DEBUG: Start: Gridsearch for DecisionTree on Clinic +2016-08-30 10:32:15,897 DEBUG: Info: Best Reslut : 0.500245901639 +2016-08-30 10:32:15,897 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 10:32:15,897 INFO: Done: Gridsearching best settings for monoview classifiers +2016-08-30 10:32:15,897 INFO: Start: Fold number 1 +2016-08-30 10:32:18,046 DEBUG: Start: Iteration 1 +2016-08-30 10:32:18,066 DEBUG: View 0 : 0.62441314554 +2016-08-30 10:32:18,076 DEBUG: View 1 : 0.37558685446 +2016-08-30 10:32:18,129 DEBUG: View 2 : 0.50234741784 +2016-08-30 10:32:18,139 DEBUG: View 3 : 0.37558685446 +2016-08-30 10:32:18,192 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:18,289 DEBUG: Start: Iteration 2 +2016-08-30 10:32:18,310 DEBUG: View 0 : 0.464788732394 +2016-08-30 10:32:18,320 DEBUG: View 1 : 0.638497652582 +2016-08-30 10:32:18,365 DEBUG: View 2 : 0.516431924883 +2016-08-30 10:32:18,375 DEBUG: View 3 : 0.619718309859 +2016-08-30 10:32:18,437 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:18,611 DEBUG: Start: Iteration 3 +2016-08-30 10:32:18,632 DEBUG: View 0 : 0.394366197183 +2016-08-30 10:32:18,641 DEBUG: View 1 : 0.638497652582 +2016-08-30 10:32:18,687 DEBUG: View 2 : 0.596244131455 +2016-08-30 10:32:18,696 DEBUG: View 3 : 0.384976525822 +2016-08-30 10:32:18,767 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:19,022 DEBUG: Start: Iteration 4 +2016-08-30 10:32:19,042 DEBUG: View 0 : 0.422535211268 +2016-08-30 10:32:19,052 DEBUG: View 1 : 0.417840375587 +2016-08-30 10:32:19,101 DEBUG: View 2 : 0.474178403756 +2016-08-30 10:32:19,111 DEBUG: View 3 : 0.43661971831 +2016-08-30 10:32:19,111 WARNING: WARNING: All bad for iteration 3 +2016-08-30 10:32:19,186 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:19,519 DEBUG: Start: Iteration 5 +2016-08-30 10:32:19,540 DEBUG: View 0 : 0.413145539906 +2016-08-30 10:32:19,550 DEBUG: View 1 : 0.704225352113 +2016-08-30 10:32:19,595 DEBUG: View 2 : 0.530516431925 +2016-08-30 10:32:19,604 DEBUG: View 3 : 0.619718309859 +2016-08-30 10:32:19,681 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:20,092 DEBUG: Start: Iteration 6 +2016-08-30 10:32:20,113 DEBUG: View 0 : 0.403755868545 +2016-08-30 10:32:20,122 DEBUG: View 1 : 0.511737089202 +2016-08-30 10:32:20,167 DEBUG: View 2 : 0.389671361502 +2016-08-30 10:32:20,176 DEBUG: View 3 : 0.553990610329 +2016-08-30 10:32:20,258 DEBUG: Best view : Clinic +2016-08-30 10:32:20,746 DEBUG: Start: Iteration 7 +2016-08-30 10:32:20,767 DEBUG: View 0 : 0.591549295775 +2016-08-30 10:32:20,777 DEBUG: View 1 : 0.619718309859 +2016-08-30 10:32:20,822 DEBUG: View 2 : 0.577464788732 +2016-08-30 10:32:20,831 DEBUG: View 3 : 0.516431924883 +2016-08-30 10:32:20,916 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:21,484 DEBUG: Start: Iteration 8 +2016-08-30 10:32:21,505 DEBUG: View 0 : 0.62441314554 +2016-08-30 10:32:21,515 DEBUG: View 1 : 0.544600938967 +2016-08-30 10:32:21,560 DEBUG: View 2 : 0.62441314554 +2016-08-30 10:32:21,569 DEBUG: View 3 : 0.380281690141 +2016-08-30 10:32:21,656 DEBUG: Best view : RANSeq +2016-08-30 10:32:22,320 DEBUG: Start: Iteration 9 +2016-08-30 10:32:22,341 DEBUG: View 0 : 0.647887323944 +2016-08-30 10:32:22,351 DEBUG: View 1 : 0.629107981221 +2016-08-30 10:32:22,396 DEBUG: View 2 : 0.488262910798 +2016-08-30 10:32:22,405 DEBUG: View 3 : 0.43661971831 +2016-08-30 10:32:22,496 DEBUG: Best view : Methyl +2016-08-30 10:32:23,250 DEBUG: Start: Iteration 10 +2016-08-30 10:32:23,270 DEBUG: View 0 : 0.577464788732 +2016-08-30 10:32:23,280 DEBUG: View 1 : 0.507042253521 +2016-08-30 10:32:23,325 DEBUG: View 2 : 0.615023474178 +2016-08-30 10:32:23,335 DEBUG: View 3 : 0.370892018779 +2016-08-30 10:32:23,429 DEBUG: Best view : RANSeq +2016-08-30 10:32:24,282 DEBUG: Start: Iteration 11 +2016-08-30 10:32:24,302 DEBUG: View 0 : 0.427230046948 +2016-08-30 10:32:24,312 DEBUG: View 1 : 0.394366197183 +2016-08-30 10:32:24,357 DEBUG: View 2 : 0.455399061033 +2016-08-30 10:32:24,367 DEBUG: View 3 : 0.600938967136 +2016-08-30 10:32:24,466 DEBUG: Best view : Clinic +2016-08-30 10:32:25,634 DEBUG: Start: Iteration 12 +2016-08-30 10:32:25,659 DEBUG: View 0 : 0.408450704225 +2016-08-30 10:32:25,669 DEBUG: View 1 : 0.647887323944 +2016-08-30 10:32:25,714 DEBUG: View 2 : 0.389671361502 +2016-08-30 10:32:25,724 DEBUG: View 3 : 0.50234741784 +2016-08-30 10:32:25,824 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:26,830 INFO: Start: Classification +2016-08-30 10:32:28,538 INFO: Done: Fold number 1 +2016-08-30 10:32:28,538 INFO: Start: Fold number 2 +2016-08-30 10:32:30,671 DEBUG: Start: Iteration 1 +2016-08-30 10:32:30,690 DEBUG: View 0 : 0.615384615385 +2016-08-30 10:32:30,700 DEBUG: View 1 : 0.432692307692 +2016-08-30 10:32:30,750 DEBUG: View 2 : 0.432692307692 +2016-08-30 10:32:30,759 DEBUG: View 3 : 0.5625 +2016-08-30 10:32:30,811 DEBUG: Best view : Methyl +2016-08-30 10:32:30,909 DEBUG: Start: Iteration 2 +2016-08-30 10:32:30,929 DEBUG: View 0 : 0.586538461538 +2016-08-30 10:32:30,939 DEBUG: View 1 : 0.552884615385 +2016-08-30 10:32:30,984 DEBUG: View 2 : 0.4375 +2016-08-30 10:32:30,993 DEBUG: View 3 : 0.423076923077 +2016-08-30 10:32:31,052 DEBUG: Best view : Methyl +2016-08-30 10:32:31,233 DEBUG: Start: Iteration 3 +2016-08-30 10:32:31,253 DEBUG: View 0 : 0.567307692308 +2016-08-30 10:32:31,263 DEBUG: View 1 : 0.639423076923 +2016-08-30 10:32:31,307 DEBUG: View 2 : 0.423076923077 +2016-08-30 10:32:31,316 DEBUG: View 3 : 0.615384615385 +2016-08-30 10:32:31,385 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:31,644 DEBUG: Start: Iteration 4 +2016-08-30 10:32:31,664 DEBUG: View 0 : 0.581730769231 +2016-08-30 10:32:31,675 DEBUG: View 1 : 0.644230769231 +2016-08-30 10:32:31,723 DEBUG: View 2 : 0.552884615385 +2016-08-30 10:32:31,733 DEBUG: View 3 : 0.581730769231 +2016-08-30 10:32:31,806 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:32,142 DEBUG: Start: Iteration 5 +2016-08-30 10:32:32,163 DEBUG: View 0 : 0.644230769231 +2016-08-30 10:32:32,172 DEBUG: View 1 : 0.379807692308 +2016-08-30 10:32:32,216 DEBUG: View 2 : 0.451923076923 +2016-08-30 10:32:32,225 DEBUG: View 3 : 0.596153846154 +2016-08-30 10:32:32,303 DEBUG: Best view : Methyl +2016-08-30 10:32:32,718 DEBUG: Start: Iteration 6 +2016-08-30 10:32:32,738 DEBUG: View 0 : 0.591346153846 +2016-08-30 10:32:32,748 DEBUG: View 1 : 0.4375 +2016-08-30 10:32:32,792 DEBUG: View 2 : 0.4375 +2016-08-30 10:32:32,801 DEBUG: View 3 : 0.519230769231 +2016-08-30 10:32:32,881 DEBUG: Best view : Methyl +2016-08-30 10:32:33,376 DEBUG: Start: Iteration 7 +2016-08-30 10:32:33,396 DEBUG: View 0 : 0.658653846154 +2016-08-30 10:32:33,406 DEBUG: View 1 : 0.336538461538 +2016-08-30 10:32:33,452 DEBUG: View 2 : 0.557692307692 +2016-08-30 10:32:33,461 DEBUG: View 3 : 0.4375 +2016-08-30 10:32:33,546 DEBUG: Best view : Methyl +2016-08-30 10:32:34,138 DEBUG: Start: Iteration 8 +2016-08-30 10:32:34,159 DEBUG: View 0 : 0.620192307692 +2016-08-30 10:32:34,168 DEBUG: View 1 : 0.586538461538 +2016-08-30 10:32:34,212 DEBUG: View 2 : 0.461538461538 +2016-08-30 10:32:34,222 DEBUG: View 3 : 0.504807692308 +2016-08-30 10:32:34,307 DEBUG: Best view : Methyl +2016-08-30 10:32:34,966 DEBUG: Start: Iteration 9 +2016-08-30 10:32:34,986 DEBUG: View 0 : 0.716346153846 +2016-08-30 10:32:34,996 DEBUG: View 1 : 0.451923076923 +2016-08-30 10:32:35,042 DEBUG: View 2 : 0.5625 +2016-08-30 10:32:35,051 DEBUG: View 3 : 0.4375 +2016-08-30 10:32:35,142 DEBUG: Best view : Methyl +2016-08-30 10:32:35,887 DEBUG: Start: Iteration 10 +2016-08-30 10:32:35,907 DEBUG: View 0 : 0.298076923077 +2016-08-30 10:32:35,917 DEBUG: View 1 : 0.384615384615 +2016-08-30 10:32:35,960 DEBUG: View 2 : 0.394230769231 +2016-08-30 10:32:35,970 DEBUG: View 3 : 0.495192307692 +2016-08-30 10:32:35,970 WARNING: WARNING: All bad for iteration 9 +2016-08-30 10:32:36,064 DEBUG: Best view : Clinic +2016-08-30 10:32:36,889 DEBUG: Start: Iteration 11 +2016-08-30 10:32:36,910 DEBUG: View 0 : 0.625 +2016-08-30 10:32:36,919 DEBUG: View 1 : 0.572115384615 +2016-08-30 10:32:36,963 DEBUG: View 2 : 0.471153846154 +2016-08-30 10:32:36,973 DEBUG: View 3 : 0.403846153846 +2016-08-30 10:32:37,067 DEBUG: Best view : Methyl +2016-08-30 10:32:37,969 DEBUG: Start: Iteration 12 +2016-08-30 10:32:37,989 DEBUG: View 0 : 0.519230769231 +2016-08-30 10:32:37,999 DEBUG: View 1 : 0.677884615385 +2016-08-30 10:32:38,044 DEBUG: View 2 : 0.524038461538 +2016-08-30 10:32:38,054 DEBUG: View 3 : 0.581730769231 +2016-08-30 10:32:38,152 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:39,168 INFO: Start: Classification +2016-08-30 10:32:40,834 INFO: Done: Fold number 2 +2016-08-30 10:32:40,834 INFO: Start: Fold number 3 +2016-08-30 10:32:42,966 DEBUG: Start: Iteration 1 +2016-08-30 10:32:42,985 DEBUG: View 0 : 0.620853080569 +2016-08-30 10:32:42,995 DEBUG: View 1 : 0.379146919431 +2016-08-30 10:32:43,039 DEBUG: View 2 : 0.620853080569 +2016-08-30 10:32:43,048 DEBUG: View 3 : 0.379146919431 +2016-08-30 10:32:43,101 DEBUG: Best view : Methyl +2016-08-30 10:32:43,202 DEBUG: Start: Iteration 2 +2016-08-30 10:32:43,223 DEBUG: View 0 : 0.654028436019 +2016-08-30 10:32:43,232 DEBUG: View 1 : 0.331753554502 +2016-08-30 10:32:43,279 DEBUG: View 2 : 0.407582938389 +2016-08-30 10:32:43,288 DEBUG: View 3 : 0.431279620853 +2016-08-30 10:32:43,348 DEBUG: Best view : Methyl +2016-08-30 10:32:43,532 DEBUG: Start: Iteration 3 +2016-08-30 10:32:43,552 DEBUG: View 0 : 0.407582938389 +2016-08-30 10:32:43,562 DEBUG: View 1 : 0.526066350711 +2016-08-30 10:32:43,607 DEBUG: View 2 : 0.578199052133 +2016-08-30 10:32:43,616 DEBUG: View 3 : 0.488151658768 +2016-08-30 10:32:43,686 DEBUG: Best view : RANSeq +2016-08-30 10:32:43,971 DEBUG: Start: Iteration 4 +2016-08-30 10:32:43,991 DEBUG: View 0 : 0.497630331754 +2016-08-30 10:32:44,001 DEBUG: View 1 : 0.644549763033 +2016-08-30 10:32:44,050 DEBUG: View 2 : 0.587677725118 +2016-08-30 10:32:44,060 DEBUG: View 3 : 0.587677725118 +2016-08-30 10:32:44,135 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:44,497 DEBUG: Start: Iteration 5 +2016-08-30 10:32:44,517 DEBUG: View 0 : 0.60663507109 +2016-08-30 10:32:44,527 DEBUG: View 1 : 0.407582938389 +2016-08-30 10:32:44,571 DEBUG: View 2 : 0.568720379147 +2016-08-30 10:32:44,581 DEBUG: View 3 : 0.582938388626 +2016-08-30 10:32:44,657 DEBUG: Best view : Methyl +2016-08-30 10:32:45,100 DEBUG: Start: Iteration 6 +2016-08-30 10:32:45,120 DEBUG: View 0 : 0.511848341232 +2016-08-30 10:32:45,130 DEBUG: View 1 : 0.369668246445 +2016-08-30 10:32:45,174 DEBUG: View 2 : 0.45971563981 +2016-08-30 10:32:45,184 DEBUG: View 3 : 0.42654028436 +2016-08-30 10:32:45,263 DEBUG: Best view : Methyl +2016-08-30 10:32:45,792 DEBUG: Start: Iteration 7 +2016-08-30 10:32:45,813 DEBUG: View 0 : 0.436018957346 +2016-08-30 10:32:45,823 DEBUG: View 1 : 0.649289099526 +2016-08-30 10:32:45,868 DEBUG: View 2 : 0.526066350711 +2016-08-30 10:32:45,877 DEBUG: View 3 : 0.582938388626 +2016-08-30 10:32:45,960 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:46,565 DEBUG: Start: Iteration 8 +2016-08-30 10:32:46,585 DEBUG: View 0 : 0.265402843602 +2016-08-30 10:32:46,595 DEBUG: View 1 : 0.436018957346 +2016-08-30 10:32:46,639 DEBUG: View 2 : 0.625592417062 +2016-08-30 10:32:46,649 DEBUG: View 3 : 0.402843601896 +2016-08-30 10:32:46,734 DEBUG: Best view : RANSeq +2016-08-30 10:32:47,448 DEBUG: Start: Iteration 9 +2016-08-30 10:32:47,468 DEBUG: View 0 : 0.421800947867 +2016-08-30 10:32:47,479 DEBUG: View 1 : 0.374407582938 +2016-08-30 10:32:47,523 DEBUG: View 2 : 0.545023696682 +2016-08-30 10:32:47,532 DEBUG: View 3 : 0.611374407583 +2016-08-30 10:32:47,621 DEBUG: Best view : Clinic +2016-08-30 10:32:48,401 DEBUG: Start: Iteration 10 +2016-08-30 10:32:48,422 DEBUG: View 0 : 0.469194312796 +2016-08-30 10:32:48,431 DEBUG: View 1 : 0.63981042654 +2016-08-30 10:32:48,476 DEBUG: View 2 : 0.478672985782 +2016-08-30 10:32:48,485 DEBUG: View 3 : 0.549763033175 +2016-08-30 10:32:48,577 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:49,431 DEBUG: Start: Iteration 11 +2016-08-30 10:32:49,451 DEBUG: View 0 : 0.587677725118 +2016-08-30 10:32:49,461 DEBUG: View 1 : 0.668246445498 +2016-08-30 10:32:49,505 DEBUG: View 2 : 0.54028436019 +2016-08-30 10:32:49,514 DEBUG: View 3 : 0.57345971564 +2016-08-30 10:32:49,609 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:50,544 DEBUG: Start: Iteration 12 +2016-08-30 10:32:50,564 DEBUG: View 0 : 0.526066350711 +2016-08-30 10:32:50,574 DEBUG: View 1 : 0.440758293839 +2016-08-30 10:32:50,618 DEBUG: View 2 : 0.521327014218 +2016-08-30 10:32:50,628 DEBUG: View 3 : 0.592417061611 +2016-08-30 10:32:50,727 DEBUG: Best view : Clinic +2016-08-30 10:32:51,744 INFO: Start: Classification +2016-08-30 10:32:53,456 INFO: Done: Fold number 3 +2016-08-30 10:32:53,457 INFO: Start: Fold number 4 +2016-08-30 10:32:55,550 DEBUG: Start: Iteration 1 +2016-08-30 10:32:55,569 DEBUG: View 0 : 0.386473429952 +2016-08-30 10:32:55,579 DEBUG: View 1 : 0.613526570048 +2016-08-30 10:32:55,614 DEBUG: View 2 : 0.613526570048 +2016-08-30 10:32:55,623 DEBUG: View 3 : 0.613526570048 +2016-08-30 10:32:55,675 DEBUG: Best view : MiRNA_ +2016-08-30 10:32:55,767 DEBUG: Start: Iteration 2 +2016-08-30 10:32:55,787 DEBUG: View 0 : 0.449275362319 +2016-08-30 10:32:55,797 DEBUG: View 1 : 0.473429951691 +2016-08-30 10:32:55,841 DEBUG: View 2 : 0.579710144928 +2016-08-30 10:32:55,850 DEBUG: View 3 : 0.3961352657 +2016-08-30 10:32:55,909 DEBUG: Best view : RANSeq +2016-08-30 10:32:56,100 DEBUG: Start: Iteration 3 +2016-08-30 10:32:56,120 DEBUG: View 0 : 0.565217391304 +2016-08-30 10:32:56,129 DEBUG: View 1 : 0.410628019324 +2016-08-30 10:32:56,174 DEBUG: View 2 : 0.473429951691 +2016-08-30 10:32:56,184 DEBUG: View 3 : 0.51690821256 +2016-08-30 10:32:56,253 DEBUG: Best view : Methyl +2016-08-30 10:32:56,528 DEBUG: Start: Iteration 4 +2016-08-30 10:32:56,549 DEBUG: View 0 : 0.3961352657 +2016-08-30 10:32:56,558 DEBUG: View 1 : 0.323671497585 +2016-08-30 10:32:56,603 DEBUG: View 2 : 0.555555555556 +2016-08-30 10:32:56,612 DEBUG: View 3 : 0.492753623188 +2016-08-30 10:32:56,684 DEBUG: Best view : RANSeq +2016-08-30 10:32:57,048 DEBUG: Start: Iteration 5 +2016-08-30 10:32:57,068 DEBUG: View 0 : 0.405797101449 +2016-08-30 10:32:57,078 DEBUG: View 1 : 0.405797101449 +2016-08-30 10:32:57,121 DEBUG: View 2 : 0.531400966184 +2016-08-30 10:32:57,131 DEBUG: View 3 : 0.657004830918 +2016-08-30 10:32:57,206 DEBUG: Best view : Clinic +2016-08-30 10:32:57,646 DEBUG: Start: Iteration 6 +2016-08-30 10:32:57,667 DEBUG: View 0 : 0.642512077295 +2016-08-30 10:32:57,677 DEBUG: View 1 : 0.43961352657 +2016-08-30 10:32:57,721 DEBUG: View 2 : 0.536231884058 +2016-08-30 10:32:57,730 DEBUG: View 3 : 0.507246376812 +2016-08-30 10:32:57,810 DEBUG: Best view : Methyl +2016-08-30 10:32:58,332 DEBUG: Start: Iteration 7 +2016-08-30 10:32:58,352 DEBUG: View 0 : 0.458937198068 +2016-08-30 10:32:58,361 DEBUG: View 1 : 0.550724637681 +2016-08-30 10:32:58,405 DEBUG: View 2 : 0.449275362319 +2016-08-30 10:32:58,415 DEBUG: View 3 : 0.536231884058 +2016-08-30 10:32:58,497 DEBUG: Best view : Clinic +2016-08-30 10:32:59,098 DEBUG: Start: Iteration 8 +2016-08-30 10:32:59,118 DEBUG: View 0 : 0.357487922705 +2016-08-30 10:32:59,127 DEBUG: View 1 : 0.333333333333 +2016-08-30 10:32:59,171 DEBUG: View 2 : 0.555555555556 +2016-08-30 10:32:59,180 DEBUG: View 3 : 0.565217391304 +2016-08-30 10:32:59,267 DEBUG: Best view : Clinic +2016-08-30 10:32:59,942 DEBUG: Start: Iteration 9 +2016-08-30 10:32:59,962 DEBUG: View 0 : 0.555555555556 +2016-08-30 10:32:59,971 DEBUG: View 1 : 0.714975845411 +2016-08-30 10:33:00,016 DEBUG: View 2 : 0.584541062802 +2016-08-30 10:33:00,025 DEBUG: View 3 : 0.599033816425 +2016-08-30 10:33:00,114 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:00,866 DEBUG: Start: Iteration 10 +2016-08-30 10:33:00,887 DEBUG: View 0 : 0.589371980676 +2016-08-30 10:33:00,896 DEBUG: View 1 : 0.400966183575 +2016-08-30 10:33:00,941 DEBUG: View 2 : 0.425120772947 +2016-08-30 10:33:00,951 DEBUG: View 3 : 0.531400966184 +2016-08-30 10:33:01,042 DEBUG: Best view : Methyl +2016-08-30 10:33:01,872 DEBUG: Start: Iteration 11 +2016-08-30 10:33:01,892 DEBUG: View 0 : 0.652173913043 +2016-08-30 10:33:01,902 DEBUG: View 1 : 0.323671497585 +2016-08-30 10:33:01,945 DEBUG: View 2 : 0.584541062802 +2016-08-30 10:33:01,955 DEBUG: View 3 : 0.550724637681 +2016-08-30 10:33:02,048 DEBUG: Best view : Methyl +2016-08-30 10:33:02,963 DEBUG: Start: Iteration 12 +2016-08-30 10:33:02,983 DEBUG: View 0 : 0.420289855072 +2016-08-30 10:33:02,993 DEBUG: View 1 : 0.652173913043 +2016-08-30 10:33:03,037 DEBUG: View 2 : 0.502415458937 +2016-08-30 10:33:03,046 DEBUG: View 3 : 0.458937198068 +2016-08-30 10:33:03,143 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:04,155 INFO: Start: Classification +2016-08-30 10:33:05,860 INFO: Done: Fold number 4 +2016-08-30 10:33:05,860 INFO: Start: Fold number 5 +2016-08-30 10:33:08,018 DEBUG: Start: Iteration 1 +2016-08-30 10:33:08,037 DEBUG: View 0 : 0.377358490566 +2016-08-30 10:33:08,047 DEBUG: View 1 : 0.377358490566 +2016-08-30 10:33:08,087 DEBUG: View 2 : 0.377358490566 +2016-08-30 10:33:08,097 DEBUG: View 3 : 0.485849056604 +2016-08-30 10:33:08,097 WARNING: WARNING: All bad for iteration 0 +2016-08-30 10:33:08,150 DEBUG: Best view : Clinic +2016-08-30 10:33:08,244 DEBUG: Start: Iteration 2 +2016-08-30 10:33:08,264 DEBUG: View 0 : 0.603773584906 +2016-08-30 10:33:08,274 DEBUG: View 1 : 0.415094339623 +2016-08-30 10:33:08,320 DEBUG: View 2 : 0.405660377358 +2016-08-30 10:33:08,330 DEBUG: View 3 : 0.632075471698 +2016-08-30 10:33:08,391 DEBUG: Best view : Clinic +2016-08-30 10:33:08,565 DEBUG: Start: Iteration 3 +2016-08-30 10:33:08,585 DEBUG: View 0 : 0.641509433962 +2016-08-30 10:33:08,595 DEBUG: View 1 : 0.665094339623 +2016-08-30 10:33:08,641 DEBUG: View 2 : 0.400943396226 +2016-08-30 10:33:08,651 DEBUG: View 3 : 0.457547169811 +2016-08-30 10:33:08,722 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:08,973 DEBUG: Start: Iteration 4 +2016-08-30 10:33:08,994 DEBUG: View 0 : 0.632075471698 +2016-08-30 10:33:09,004 DEBUG: View 1 : 0.61320754717 +2016-08-30 10:33:09,056 DEBUG: View 2 : 0.471698113208 +2016-08-30 10:33:09,065 DEBUG: View 3 : 0.481132075472 +2016-08-30 10:33:09,139 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:09,480 DEBUG: Start: Iteration 5 +2016-08-30 10:33:09,501 DEBUG: View 0 : 0.542452830189 +2016-08-30 10:33:09,511 DEBUG: View 1 : 0.674528301887 +2016-08-30 10:33:09,556 DEBUG: View 2 : 0.547169811321 +2016-08-30 10:33:09,566 DEBUG: View 3 : 0.570754716981 +2016-08-30 10:33:09,643 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:10,057 DEBUG: Start: Iteration 6 +2016-08-30 10:33:10,082 DEBUG: View 0 : 0.570754716981 +2016-08-30 10:33:10,092 DEBUG: View 1 : 0.410377358491 +2016-08-30 10:33:10,139 DEBUG: View 2 : 0.547169811321 +2016-08-30 10:33:10,148 DEBUG: View 3 : 0.36320754717 +2016-08-30 10:33:10,233 DEBUG: Best view : Methyl +2016-08-30 10:33:10,741 DEBUG: Start: Iteration 7 +2016-08-30 10:33:10,765 DEBUG: View 0 : 0.547169811321 +2016-08-30 10:33:10,777 DEBUG: View 1 : 0.594339622642 +2016-08-30 10:33:10,841 DEBUG: View 2 : 0.561320754717 +2016-08-30 10:33:10,851 DEBUG: View 3 : 0.589622641509 +2016-08-30 10:33:10,964 DEBUG: Best view : Methyl +2016-08-30 10:33:11,636 DEBUG: Start: Iteration 8 +2016-08-30 10:33:11,657 DEBUG: View 0 : 0.52358490566 +2016-08-30 10:33:11,667 DEBUG: View 1 : 0.778301886792 +2016-08-30 10:33:11,712 DEBUG: View 2 : 0.617924528302 +2016-08-30 10:33:11,721 DEBUG: View 3 : 0.580188679245 +2016-08-30 10:33:11,808 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:12,481 DEBUG: Start: Iteration 9 +2016-08-30 10:33:12,502 DEBUG: View 0 : 0.471698113208 +2016-08-30 10:33:12,512 DEBUG: View 1 : 0.707547169811 +2016-08-30 10:33:12,577 DEBUG: View 2 : 0.594339622642 +2016-08-30 10:33:12,591 DEBUG: View 3 : 0.433962264151 +2016-08-30 10:33:12,725 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:13,559 DEBUG: Start: Iteration 10 +2016-08-30 10:33:13,579 DEBUG: View 0 : 0.63679245283 +2016-08-30 10:33:13,589 DEBUG: View 1 : 0.358490566038 +2016-08-30 10:33:13,633 DEBUG: View 2 : 0.566037735849 +2016-08-30 10:33:13,643 DEBUG: View 3 : 0.61320754717 +2016-08-30 10:33:13,740 DEBUG: Best view : Methyl +2016-08-30 10:33:14,619 DEBUG: Start: Iteration 11 +2016-08-30 10:33:14,640 DEBUG: View 0 : 0.504716981132 +2016-08-30 10:33:14,649 DEBUG: View 1 : 0.382075471698 +2016-08-30 10:33:14,694 DEBUG: View 2 : 0.528301886792 +2016-08-30 10:33:14,703 DEBUG: View 3 : 0.594339622642 +2016-08-30 10:33:14,799 DEBUG: Best view : Clinic +2016-08-30 10:33:15,762 DEBUG: Start: Iteration 12 +2016-08-30 10:33:15,790 DEBUG: View 0 : 0.52358490566 +2016-08-30 10:33:15,801 DEBUG: View 1 : 0.768867924528 +2016-08-30 10:33:15,855 DEBUG: View 2 : 0.419811320755 +2016-08-30 10:33:15,866 DEBUG: View 3 : 0.63679245283 +2016-08-30 10:33:15,993 DEBUG: Best view : MiRNA_ +2016-08-30 10:33:17,215 INFO: Start: Classification +2016-08-30 10:33:18,932 INFO: Done: Fold number 5 +2016-08-30 10:33:18,932 INFO: Done: Classification +2016-08-30 10:33:18,932 INFO: Info: Time for Classification: 77[s] +2016-08-30 10:33:18,932 INFO: Start: Result Analysis for Mumbo diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-103354-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-103354-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..5aefc95277806c83776770efad289a287a0e2105 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-103354-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 10:33:54,921 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-103441-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-103441-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..28f996c8fd429bae6aaf5004a7dfe3a6af31bbfa --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-103441-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 10:34:41,540 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-103912-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-103912-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..3b1d3b51c3ec526cf265895f5ddd7ee0b68781ee --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-103912-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 10:39:12,183 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-104000-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-104000-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..063116f170fc369ea949d8a660bc86473e655dde --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-104000-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 10:40:00,884 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-104030-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-104030-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..c2f50254da0f08d3391e16cc526c303f7ad32fbd --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-104030-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 10:40:30,687 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:40:30,691 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:40:30,691 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 10:40:30,691 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 10:40:30,692 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 10:40:30,692 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 10:40:30,693 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 10:40:30,693 INFO: Done: Read Database Files +2016-08-30 10:40:30,693 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:40:30,697 INFO: Done: Determine validation split +2016-08-30 10:40:30,697 INFO: Start: Determine 5 folds +2016-08-30 10:40:30,707 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:40:30,707 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:40:30,707 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:40:30,707 INFO: Done: Determine folds +2016-08-30 10:40:30,707 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 10:40:30,707 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-104124-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-104124-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..56cba5c7703dc84ba4a994aa3a972cf8a7f5c180 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-104124-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 10:41:24,634 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 10:41:24,637 INFO: ### Main Programm for Multiview Classification +2016-08-30 10:41:24,637 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 10:41:24,637 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 10:41:24,638 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 10:41:24,638 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 10:41:24,639 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 10:41:24,639 INFO: Done: Read Database Files +2016-08-30 10:41:24,639 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 10:41:24,643 INFO: Done: Determine validation split +2016-08-30 10:41:24,643 INFO: Start: Determine 5 folds +2016-08-30 10:41:24,649 INFO: Info: Length of Learning Sets: 196 +2016-08-30 10:41:24,649 INFO: Info: Length of Testing Sets: 48 +2016-08-30 10:41:24,649 INFO: Info: Length of Validation Set: 103 +2016-08-30 10:41:24,649 INFO: Done: Determine folds +2016-08-30 10:41:24,649 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 10:41:24,650 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-111552-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-111552-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..9de80239a70600a5f80df2f4047a2e66744d2c7a --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-111552-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:15:52,440 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:15:52,443 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:15:52,443 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:15:52,444 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:15:52,444 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:15:52,444 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:15:52,445 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:15:52,445 INFO: Done: Read Database Files +2016-08-30 11:15:52,445 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:15:52,449 INFO: Done: Determine validation split +2016-08-30 11:15:52,449 INFO: Start: Determine 5 folds +2016-08-30 11:15:52,457 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:15:52,457 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:15:52,457 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:15:52,458 INFO: Done: Determine folds +2016-08-30 11:15:52,458 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:15:52,458 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-111631-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-111631-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..1bf11011f7d9930c1a9b954ad02c676d3496fa9f --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-111631-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:16:31,858 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:16:31,861 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:16:31,861 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:16:31,861 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:16:31,862 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:16:31,862 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:16:31,862 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:16:31,863 INFO: Done: Read Database Files +2016-08-30 11:16:31,863 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:16:31,866 INFO: Done: Determine validation split +2016-08-30 11:16:31,866 INFO: Start: Determine 5 folds +2016-08-30 11:16:31,874 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:16:31,874 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:16:31,875 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:16:31,875 INFO: Done: Determine folds +2016-08-30 11:16:31,875 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:16:31,875 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-111651-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-111651-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..3d5ef906b12196dc6a95ff5525e1a13b06509ef8 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-111651-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:16:51,463 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:16:51,467 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:16:51,467 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:16:51,468 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:16:51,468 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:16:51,469 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:16:51,469 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:16:51,469 INFO: Done: Read Database Files +2016-08-30 11:16:51,469 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:16:51,473 INFO: Done: Determine validation split +2016-08-30 11:16:51,473 INFO: Start: Determine 5 folds +2016-08-30 11:16:51,480 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:16:51,480 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:16:51,480 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:16:51,480 INFO: Done: Determine folds +2016-08-30 11:16:51,480 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:16:51,480 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-111721-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-111721-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..4adb9e9a2065394b1235221b429635972bfff488 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-111721-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:17:21,256 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:17:21,260 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:17:21,260 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:17:21,260 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:17:21,261 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:17:21,261 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:17:21,262 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:17:21,262 INFO: Done: Read Database Files +2016-08-30 11:17:21,262 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:17:21,266 INFO: Done: Determine validation split +2016-08-30 11:17:21,266 INFO: Start: Determine 5 folds +2016-08-30 11:17:21,275 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:17:21,275 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:17:21,275 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:17:21,275 INFO: Done: Determine folds +2016-08-30 11:17:21,275 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:17:21,275 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-111801-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-111801-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e2e98434dfe33dba4d56292499ca94aa839c6a2d --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-111801-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:18:01,192 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:18:01,196 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:18:01,196 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:18:01,197 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:18:01,198 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:18:01,199 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:18:01,199 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:18:01,199 INFO: Done: Read Database Files +2016-08-30 11:18:01,199 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:18:01,203 INFO: Done: Determine validation split +2016-08-30 11:18:01,203 INFO: Start: Determine 5 folds +2016-08-30 11:18:01,211 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:18:01,211 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:18:01,211 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:18:01,211 INFO: Done: Determine folds +2016-08-30 11:18:01,211 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:18:01,211 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-112132-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-112132-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..cafff0e53c1d0ec91a53fa55a76aec6179e5ef5b --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-112132-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:21:32,186 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:21:32,189 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:21:32,189 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:21:32,189 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:21:32,189 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:21:32,190 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:21:32,190 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:21:32,191 INFO: Done: Read Database Files +2016-08-30 11:21:32,191 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:21:32,194 INFO: Done: Determine validation split +2016-08-30 11:21:32,194 INFO: Start: Determine 5 folds +2016-08-30 11:21:32,203 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:21:32,203 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:21:32,203 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:21:32,203 INFO: Done: Determine folds +2016-08-30 11:21:32,203 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:21:32,204 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-112630-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-112630-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..036d6c4f2d1cf694cc335e1ab246d716b8f66d6d --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-112630-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:26:30,166 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:26:30,172 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:26:30,172 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:26:30,173 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:26:30,175 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:26:30,175 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:26:30,176 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:26:30,177 INFO: Done: Read Database Files +2016-08-30 11:26:30,177 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:26:30,182 INFO: Done: Determine validation split +2016-08-30 11:26:30,182 INFO: Start: Determine 5 folds +2016-08-30 11:26:30,189 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:26:30,189 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:26:30,189 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:26:30,189 INFO: Done: Determine folds +2016-08-30 11:26:30,189 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:26:30,189 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-113306-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-113306-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..1f185bb0acc7013b8e9c0946339c6094744e2aa2 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-113306-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,24 @@ +2016-08-30 11:33:06,872 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:33:06,876 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:33:06,876 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Mumbo ; Cores : 1 +2016-08-30 11:33:06,877 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:33:06,877 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:33:06,878 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:33:06,878 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:33:06,879 INFO: Done: Read Database Files +2016-08-30 11:33:06,879 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:33:06,883 INFO: Done: Determine validation split +2016-08-30 11:33:06,884 INFO: Start: Determine 5 folds +2016-08-30 11:33:06,892 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:33:06,892 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:33:06,892 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:33:06,892 INFO: Done: Determine folds +2016-08-30 11:33:06,893 INFO: Start: Learning with Mumbo and 5 folds +2016-08-30 11:33:06,893 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 11:33:06,893 DEBUG: Start: Gridsearch for DecisionTree on Methyl +2016-08-30 11:33:10,734 DEBUG: Info: Best Reslut : 0.511229508197 +2016-08-30 11:33:10,735 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 11:33:10,735 DEBUG: Start: Gridsearch for DecisionTree on MiRNA_ +2016-08-30 11:33:12,103 DEBUG: Info: Best Reslut : 0.566885245902 +2016-08-30 11:33:12,103 DEBUG: Done: Gridsearch for DecisionTree +2016-08-30 11:33:12,103 DEBUG: Start: Gridsearch for DecisionTree on RANSeq diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-113333-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-113333-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..76aac63bbb7cda593ba2deff9fb33cae7402aebc --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-113333-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:33:33,283 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:33:33,287 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:33:33,287 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:33:33,287 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:33:33,288 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:33:33,288 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:33:33,289 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:33:33,289 INFO: Done: Read Database Files +2016-08-30 11:33:33,289 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:33:33,292 INFO: Done: Determine validation split +2016-08-30 11:33:33,292 INFO: Start: Determine 5 folds +2016-08-30 11:33:33,300 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:33:33,301 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:33:33,301 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:33:33,301 INFO: Done: Determine folds +2016-08-30 11:33:33,301 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:33:33,301 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-113715-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-113715-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..bccb04ff7ce1146d8f8883207fbb55d7253f330c --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-113715-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:37:15,915 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:37:15,919 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:37:15,919 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:37:15,920 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:37:15,920 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:37:15,921 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:37:15,921 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:37:15,921 INFO: Done: Read Database Files +2016-08-30 11:37:15,921 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:37:15,925 INFO: Done: Determine validation split +2016-08-30 11:37:15,925 INFO: Start: Determine 5 folds +2016-08-30 11:37:15,933 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:37:15,933 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:37:15,933 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:37:15,933 INFO: Done: Determine folds +2016-08-30 11:37:15,933 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:37:15,934 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-114018-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-114018-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..60dc01d842b51d23d335be7242f8829659be3eac --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-114018-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,19 @@ +2016-08-30 11:40:18,184 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:40:18,188 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:40:18,188 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:40:18,188 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:40:18,189 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:40:18,189 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:40:18,190 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:40:18,190 INFO: Done: Read Database Files +2016-08-30 11:40:18,190 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:40:18,194 INFO: Done: Determine validation split +2016-08-30 11:40:18,194 INFO: Start: Determine 5 folds +2016-08-30 11:40:18,201 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:40:18,202 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:40:18,202 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:40:18,202 INFO: Done: Determine folds +2016-08-30 11:40:18,202 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:40:18,202 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 11:42:11,831 INFO: Done: Gridsearching best settings for monoview classifiers +2016-08-30 11:42:11,831 INFO: Start: Fold number 1 diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-114344-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-114344-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..ffdb5985722f49ddc79573bc8a06052b7b698a7d --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-114344-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,19 @@ +2016-08-30 11:43:44,517 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:43:44,521 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:43:44,521 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:43:44,521 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:43:44,521 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:43:44,522 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:43:44,522 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:43:44,522 INFO: Done: Read Database Files +2016-08-30 11:43:44,522 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:43:44,526 INFO: Done: Determine validation split +2016-08-30 11:43:44,526 INFO: Start: Determine 5 folds +2016-08-30 11:43:44,533 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:43:44,534 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:43:44,534 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:43:44,534 INFO: Done: Determine folds +2016-08-30 11:43:44,534 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:43:44,534 INFO: Start: Gridsearching best settings for monoview classifiers +2016-08-30 11:45:38,865 INFO: Done: Gridsearching best settings for monoview classifiers +2016-08-30 11:45:38,865 INFO: Start: Fold number 1 diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-114801-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-114801-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..b9d58f565d2800c0eb63d2f555acdfd62dc0540b --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-114801-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:48:01,091 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:48:01,094 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:48:01,094 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:48:01,094 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:48:01,095 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:48:01,095 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:48:01,096 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:48:01,096 INFO: Done: Read Database Files +2016-08-30 11:48:01,096 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:48:01,100 INFO: Done: Determine validation split +2016-08-30 11:48:01,100 INFO: Start: Determine 5 folds +2016-08-30 11:48:01,108 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:48:01,108 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:48:01,108 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:48:01,109 INFO: Done: Determine folds +2016-08-30 11:48:01,109 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:48:01,109 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-115133-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-115133-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..15cf2d19e08ed96106765f4daf11d7563d8eb2a7 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-115133-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:51:33,943 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:51:33,947 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:51:33,947 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:51:33,948 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:51:33,948 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:51:33,948 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:51:33,949 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:51:33,949 INFO: Done: Read Database Files +2016-08-30 11:51:33,949 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:51:33,953 INFO: Done: Determine validation split +2016-08-30 11:51:33,953 INFO: Start: Determine 5 folds +2016-08-30 11:51:33,961 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:51:33,961 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:51:33,961 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:51:33,961 INFO: Done: Determine folds +2016-08-30 11:51:33,961 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:51:33,961 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-115229-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-115229-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..43fe7249eba8dc7a9a72df669170f5844c629efa --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-115229-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:52:29,468 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:52:29,471 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:52:29,472 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:52:29,472 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:52:29,472 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:52:29,473 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:52:29,473 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:52:29,473 INFO: Done: Read Database Files +2016-08-30 11:52:29,473 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:52:29,477 INFO: Done: Determine validation split +2016-08-30 11:52:29,477 INFO: Start: Determine 5 folds +2016-08-30 11:52:29,485 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:52:29,485 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:52:29,485 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:52:29,486 INFO: Done: Determine folds +2016-08-30 11:52:29,486 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:52:29,486 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-115605-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-115605-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..5301fb8af7675c79a22cc35a98c75e03b68dce8b --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-115605-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:56:05,730 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:56:05,733 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:56:05,734 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:56:05,734 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:56:05,735 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:56:05,735 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:56:05,735 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:56:05,736 INFO: Done: Read Database Files +2016-08-30 11:56:05,736 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:56:05,740 INFO: Done: Determine validation split +2016-08-30 11:56:05,740 INFO: Start: Determine 5 folds +2016-08-30 11:56:05,748 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:56:05,748 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:56:05,748 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:56:05,748 INFO: Done: Determine folds +2016-08-30 11:56:05,748 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:56:05,748 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-115919-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-115919-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..b77b6bd2e132dd2f10910a7300427a45ce54ed5f --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-115919-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,17 @@ +2016-08-30 11:59:19,771 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 11:59:19,775 INFO: ### Main Programm for Multiview Classification +2016-08-30 11:59:19,775 INFO: ### Classification - Database : MultiOmic ; Views : Methyl, MiRNA_, RNASeq, Clinic ; Algorithm : Fusion ; Cores : 1 +2016-08-30 11:59:19,776 INFO: Info: Shape of Methyl :(347, 25978) +2016-08-30 11:59:19,776 INFO: Info: Shape of MiRNA_ :(347, 1046) +2016-08-30 11:59:19,777 INFO: Info: Shape of RANSeq :(347, 73599) +2016-08-30 11:59:19,777 INFO: Info: Shape of Clinic :(347, 127) +2016-08-30 11:59:19,777 INFO: Done: Read Database Files +2016-08-30 11:59:19,777 INFO: Start: Determine validation split for ratio 0.7 +2016-08-30 11:59:19,781 INFO: Done: Determine validation split +2016-08-30 11:59:19,781 INFO: Start: Determine 5 folds +2016-08-30 11:59:19,788 INFO: Info: Length of Learning Sets: 196 +2016-08-30 11:59:19,788 INFO: Info: Length of Testing Sets: 48 +2016-08-30 11:59:19,789 INFO: Info: Length of Validation Set: 103 +2016-08-30 11:59:19,789 INFO: Done: Determine folds +2016-08-30 11:59:19,789 INFO: Start: Learning with Fusion and 5 folds +2016-08-30 11:59:19,789 INFO: Start: Gridsearching best settings for monoview classifiers diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-120336-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-120336-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..b81da0aa8510aa79b3cef953e8df39bd3d2fc355 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-120336-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,195 @@ +2016-08-30 12:03:36,717 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 12:03:36,730 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:03:36,730 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 12:03:36,730 DEBUG: Start: Determine Train/Test split +2016-08-30 12:03:36,744 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:03:36,744 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:03:36,745 DEBUG: Done: Determine Train/Test split +2016-08-30 12:03:36,745 DEBUG: Start: Classification +2016-08-30 12:03:47,963 DEBUG: Info: Time for Classification: 11.2434618473[s] +2016-08-30 12:03:47,963 DEBUG: Done: Classification +2016-08-30 12:03:47,987 DEBUG: Start: Statistic Results +2016-08-30 12:03:47,987 INFO: Accuracy :0.838095238095 +2016-08-30 12:03:47,999 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:03:47,999 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 12:03:47,999 DEBUG: Start: Determine Train/Test split +2016-08-30 12:03:48,010 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:03:48,010 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:03:48,011 DEBUG: Done: Determine Train/Test split +2016-08-30 12:03:48,011 DEBUG: Start: Classification +2016-08-30 12:03:58,159 DEBUG: Info: Time for Classification: 10.1701390743[s] +2016-08-30 12:03:58,159 DEBUG: Done: Classification +2016-08-30 12:03:58,162 DEBUG: Start: Statistic Results +2016-08-30 12:03:58,162 INFO: Accuracy :0.819047619048 +2016-08-30 12:03:58,174 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:03:58,175 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 12:03:58,175 DEBUG: Start: Determine Train/Test split +2016-08-30 12:03:58,188 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:03:58,188 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:03:58,188 DEBUG: Done: Determine Train/Test split +2016-08-30 12:03:58,188 DEBUG: Start: Classification +2016-08-30 12:04:00,912 DEBUG: Info: Time for Classification: 2.74817919731[s] +2016-08-30 12:04:00,913 DEBUG: Done: Classification +2016-08-30 12:04:02,188 DEBUG: Start: Statistic Results +2016-08-30 12:04:02,189 INFO: Accuracy :0.87619047619 +2016-08-30 12:04:02,201 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:02,201 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 12:04:02,201 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:02,215 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:04:02,215 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:04:02,215 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:02,215 DEBUG: Start: Classification +2016-08-30 12:04:02,958 DEBUG: Info: Time for Classification: 0.766482830048[s] +2016-08-30 12:04:02,958 DEBUG: Done: Classification +2016-08-30 12:04:02,962 DEBUG: Start: Statistic Results +2016-08-30 12:04:02,962 INFO: Accuracy :0.885714285714 +2016-08-30 12:04:02,974 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:02,975 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 12:04:02,975 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:02,988 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:04:02,988 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:04:02,988 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:02,989 DEBUG: Start: Classification +2016-08-30 12:04:04,699 DEBUG: Info: Time for Classification: 1.73435711861[s] +2016-08-30 12:04:04,699 DEBUG: Done: Classification +2016-08-30 12:04:04,708 DEBUG: Start: Statistic Results +2016-08-30 12:04:04,708 INFO: Accuracy :0.761904761905 +2016-08-30 12:04:04,718 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:04,718 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 12:04:04,719 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:04,731 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:04:04,731 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:04:04,731 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:04,731 DEBUG: Start: Classification +2016-08-30 12:04:13,743 DEBUG: Info: Time for Classification: 9.03304004669[s] +2016-08-30 12:04:13,743 DEBUG: Done: Classification +2016-08-30 12:04:14,080 DEBUG: Start: Statistic Results +2016-08-30 12:04:14,080 INFO: Accuracy :0.838095238095 +2016-08-30 12:04:14,089 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:14,089 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 12:04:14,089 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:14,101 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:04:14,101 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:04:14,101 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:14,101 DEBUG: Start: Classification +2016-08-30 12:04:23,971 DEBUG: Info: Time for Classification: 9.88981103897[s] +2016-08-30 12:04:23,972 DEBUG: Done: Classification +2016-08-30 12:04:24,391 DEBUG: Start: Statistic Results +2016-08-30 12:04:24,391 INFO: Accuracy :0.819047619048 +2016-08-30 12:04:24,400 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:24,400 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-30 12:04:24,400 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:24,412 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:04:24,412 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:04:24,412 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:24,412 DEBUG: Start: Classification +2016-08-30 12:04:35,480 DEBUG: Info: Time for Classification: 11.0867400169[s] +2016-08-30 12:04:35,480 DEBUG: Done: Classification +2016-08-30 12:04:35,853 DEBUG: Start: Statistic Results +2016-08-30 12:04:35,854 INFO: Accuracy :0.914285714286 +2016-08-30 12:04:35,855 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:35,855 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 12:04:35,855 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:35,856 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:35,856 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:35,856 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:35,856 DEBUG: Start: Classification +2016-08-30 12:04:36,123 DEBUG: Info: Time for Classification: 0.267621040344[s] +2016-08-30 12:04:36,123 DEBUG: Done: Classification +2016-08-30 12:04:36,124 DEBUG: Start: Statistic Results +2016-08-30 12:04:36,125 INFO: Accuracy :0.752380952381 +2016-08-30 12:04:36,126 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:36,126 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 12:04:36,126 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:36,127 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:36,127 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:36,127 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:36,127 DEBUG: Start: Classification +2016-08-30 12:04:36,393 DEBUG: Info: Time for Classification: 0.267601013184[s] +2016-08-30 12:04:36,393 DEBUG: Done: Classification +2016-08-30 12:04:36,395 DEBUG: Start: Statistic Results +2016-08-30 12:04:36,395 INFO: Accuracy :0.780952380952 +2016-08-30 12:04:36,396 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:36,396 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 12:04:36,396 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:36,397 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:36,397 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:36,397 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:36,397 DEBUG: Start: Classification +2016-08-30 12:04:36,506 DEBUG: Info: Time for Classification: 0.109934806824[s] +2016-08-30 12:04:36,506 DEBUG: Done: Classification +2016-08-30 12:04:36,552 DEBUG: Start: Statistic Results +2016-08-30 12:04:36,552 INFO: Accuracy :0.714285714286 +2016-08-30 12:04:36,554 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:36,554 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 12:04:36,554 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:36,555 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:36,555 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:36,555 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:36,555 DEBUG: Start: Classification +2016-08-30 12:04:36,785 DEBUG: Info: Time for Classification: 0.231173038483[s] +2016-08-30 12:04:36,785 DEBUG: Done: Classification +2016-08-30 12:04:36,787 DEBUG: Start: Statistic Results +2016-08-30 12:04:36,787 INFO: Accuracy :0.866666666667 +2016-08-30 12:04:36,788 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:36,789 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 12:04:36,789 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:36,789 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:36,789 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:36,789 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:36,790 DEBUG: Start: Classification +2016-08-30 12:04:36,904 DEBUG: Info: Time for Classification: 0.115266084671[s] +2016-08-30 12:04:36,904 DEBUG: Done: Classification +2016-08-30 12:04:36,905 DEBUG: Start: Statistic Results +2016-08-30 12:04:36,906 INFO: Accuracy :0.828571428571 +2016-08-30 12:04:36,907 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:36,907 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 12:04:36,907 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:36,908 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:36,908 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:36,908 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:36,908 DEBUG: Start: Classification +2016-08-30 12:04:45,396 DEBUG: Info: Time for Classification: 8.48903298378[s] +2016-08-30 12:04:45,396 DEBUG: Done: Classification +2016-08-30 12:04:45,404 DEBUG: Start: Statistic Results +2016-08-30 12:04:45,404 INFO: Accuracy :0.761904761905 +2016-08-30 12:04:45,405 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:45,405 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 12:04:45,405 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:45,406 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:45,406 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:45,406 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:45,406 DEBUG: Start: Classification +2016-08-30 12:04:45,450 DEBUG: Info: Time for Classification: 0.0446889400482[s] +2016-08-30 12:04:45,450 DEBUG: Done: Classification +2016-08-30 12:04:45,452 DEBUG: Start: Statistic Results +2016-08-30 12:04:45,452 INFO: Accuracy :0.266666666667 +2016-08-30 12:04:45,453 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:45,453 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-30 12:04:45,453 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:45,454 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:04:45,454 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:04:45,454 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:45,454 DEBUG: Start: Classification +2016-08-30 12:04:46,106 DEBUG: Info: Time for Classification: 0.653275966644[s] +2016-08-30 12:04:46,106 DEBUG: Done: Classification +2016-08-30 12:04:46,135 DEBUG: Start: Statistic Results +2016-08-30 12:04:46,135 INFO: Accuracy :0.733333333333 +2016-08-30 12:04:46,181 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:04:46,181 DEBUG: ### Classification - Database:MultiOmic Feature:RANSeq train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 12:04:46,182 DEBUG: Start: Determine Train/Test split +2016-08-30 12:04:46,235 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 12:04:46,235 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 12:04:46,235 DEBUG: Done: Determine Train/Test split +2016-08-30 12:04:46,236 DEBUG: Start: Classification +2016-08-30 12:05:24,578 DEBUG: Info: Time for Classification: 38.4417188168[s] +2016-08-30 12:05:24,578 DEBUG: Done: Classification +2016-08-30 12:05:24,588 DEBUG: Start: Statistic Results +2016-08-30 12:05:24,589 INFO: Accuracy :0.542857142857 +2016-08-30 12:05:24,640 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:05:24,640 DEBUG: ### Classification - Database:MultiOmic Feature:RANSeq train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 12:05:24,640 DEBUG: Start: Determine Train/Test split +2016-08-30 12:05:24,692 DEBUG: Info: Shape X_train:(242, 73599), Length of y_train:242 +2016-08-30 12:05:24,693 DEBUG: Info: Shape X_test:(105, 73599), Length of y_test:105 +2016-08-30 12:05:24,693 DEBUG: Done: Determine Train/Test split +2016-08-30 12:05:24,693 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-120633-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-120633-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..297597300926777d262c8d5ed0045ffdf54f12eb --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-120633-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 12:06:33,599 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-120904-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-120904-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..97a22c85cee31f41768468eb0240c1a77ea45f11 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-120904-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-30 12:09:04,809 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 12:09:04,823 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:09:04,823 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 12:09:04,823 DEBUG: Start: Determine Train/Test split +2016-08-30 12:09:04,837 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:09:04,838 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:09:04,838 DEBUG: Done: Determine Train/Test split +2016-08-30 12:09:04,838 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-120923-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-120923-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..bfec55db2a8643e27fe4f7325e98eb58c074882d --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-120923-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1 @@ +2016-08-30 12:09:23,217 INFO: Start: Finding all available mono- & multiview algorithms diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-121006-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-121006-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..b3084b9a61beb2e941ed298d3a75fe1fbafc39ac --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-121006-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,162 @@ +2016-08-30 12:10:06,567 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 12:10:06,583 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:10:06,583 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 12:10:06,584 DEBUG: Start: Determine Train/Test split +2016-08-30 12:10:06,605 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:10:06,605 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:10:06,605 DEBUG: Done: Determine Train/Test split +2016-08-30 12:10:06,606 DEBUG: Start: Classification +2016-08-30 12:13:40,602 DEBUG: Info: Time for Classification: 214.031033993[s] +2016-08-30 12:13:40,602 DEBUG: Done: Classification +2016-08-30 12:13:40,607 DEBUG: Start: Statistic Results +2016-08-30 12:13:40,607 INFO: Accuracy :0.828571428571 +2016-08-30 12:13:40,893 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:13:40,893 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 12:13:40,894 DEBUG: Start: Determine Train/Test split +2016-08-30 12:13:40,908 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:13:40,908 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:13:40,908 DEBUG: Done: Determine Train/Test split +2016-08-30 12:13:40,908 DEBUG: Start: Classification +2016-08-30 12:16:58,671 DEBUG: Info: Time for Classification: 198.055801153[s] +2016-08-30 12:16:58,671 DEBUG: Done: Classification +2016-08-30 12:16:58,674 DEBUG: Start: Statistic Results +2016-08-30 12:16:58,674 INFO: Accuracy :0.771428571429 +2016-08-30 12:16:58,688 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:16:58,688 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 12:16:58,688 DEBUG: Start: Determine Train/Test split +2016-08-30 12:16:58,717 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:16:58,717 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:16:58,717 DEBUG: Done: Determine Train/Test split +2016-08-30 12:16:58,717 DEBUG: Start: Classification +2016-08-30 12:18:12,781 DEBUG: Info: Time for Classification: 74.1028950214[s] +2016-08-30 12:18:12,781 DEBUG: Done: Classification +2016-08-30 12:18:14,045 DEBUG: Start: Statistic Results +2016-08-30 12:18:14,045 INFO: Accuracy :0.866666666667 +2016-08-30 12:18:14,058 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:18:14,058 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 12:18:14,058 DEBUG: Start: Determine Train/Test split +2016-08-30 12:18:14,072 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:18:14,072 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:18:14,072 DEBUG: Done: Determine Train/Test split +2016-08-30 12:18:14,072 DEBUG: Start: Classification +2016-08-30 12:18:36,574 DEBUG: Info: Time for Classification: 22.5265438557[s] +2016-08-30 12:18:36,575 DEBUG: Done: Classification +2016-08-30 12:18:36,580 DEBUG: Start: Statistic Results +2016-08-30 12:18:36,581 INFO: Accuracy :0.885714285714 +2016-08-30 12:18:36,593 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:18:36,593 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 12:18:36,593 DEBUG: Start: Determine Train/Test split +2016-08-30 12:18:36,608 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:18:36,608 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:18:36,608 DEBUG: Done: Determine Train/Test split +2016-08-30 12:18:36,608 DEBUG: Start: Classification +2016-08-30 12:19:07,120 DEBUG: Info: Time for Classification: 30.5368850231[s] +2016-08-30 12:19:07,120 DEBUG: Done: Classification +2016-08-30 12:19:07,129 DEBUG: Start: Statistic Results +2016-08-30 12:19:07,129 INFO: Accuracy :0.895238095238 +2016-08-30 12:19:07,139 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:19:07,139 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 12:19:07,139 DEBUG: Start: Determine Train/Test split +2016-08-30 12:19:07,151 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:19:07,151 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:19:07,151 DEBUG: Done: Determine Train/Test split +2016-08-30 12:19:07,151 DEBUG: Start: Classification +2016-08-30 12:20:43,155 DEBUG: Info: Time for Classification: 96.0247499943[s] +2016-08-30 12:20:43,155 DEBUG: Done: Classification +2016-08-30 12:20:43,427 DEBUG: Start: Statistic Results +2016-08-30 12:20:43,427 INFO: Accuracy :0.857142857143 +2016-08-30 12:20:43,436 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:20:43,436 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 12:20:43,436 DEBUG: Start: Determine Train/Test split +2016-08-30 12:20:43,448 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:20:43,448 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:20:43,448 DEBUG: Done: Determine Train/Test split +2016-08-30 12:20:43,448 DEBUG: Start: Classification +2016-08-30 12:22:26,658 DEBUG: Info: Time for Classification: 103.229175806[s] +2016-08-30 12:22:26,658 DEBUG: Done: Classification +2016-08-30 12:22:26,943 DEBUG: Start: Statistic Results +2016-08-30 12:22:26,944 INFO: Accuracy :0.87619047619 +2016-08-30 12:22:26,953 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:22:26,953 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMRBF +2016-08-30 12:22:26,953 DEBUG: Start: Determine Train/Test split +2016-08-30 12:22:26,965 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 12:22:26,965 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 12:22:26,965 DEBUG: Done: Determine Train/Test split +2016-08-30 12:22:26,965 DEBUG: Start: Classification +2016-08-30 12:24:41,765 DEBUG: Info: Time for Classification: 134.81978488[s] +2016-08-30 12:24:41,765 DEBUG: Done: Classification +2016-08-30 12:24:42,111 DEBUG: Start: Statistic Results +2016-08-30 12:24:42,111 INFO: Accuracy :0.885714285714 +2016-08-30 12:24:42,139 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:24:42,140 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 12:24:42,140 DEBUG: Start: Determine Train/Test split +2016-08-30 12:24:42,141 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:24:42,141 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:24:42,141 DEBUG: Done: Determine Train/Test split +2016-08-30 12:24:42,142 DEBUG: Start: Classification +2016-08-30 12:24:48,311 DEBUG: Info: Time for Classification: 6.19787788391[s] +2016-08-30 12:24:48,311 DEBUG: Done: Classification +2016-08-30 12:24:48,312 DEBUG: Start: Statistic Results +2016-08-30 12:24:48,313 INFO: Accuracy :0.838095238095 +2016-08-30 12:24:48,314 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:24:48,314 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 12:24:48,314 DEBUG: Start: Determine Train/Test split +2016-08-30 12:24:48,315 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:24:48,315 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:24:48,315 DEBUG: Done: Determine Train/Test split +2016-08-30 12:24:48,315 DEBUG: Start: Classification +2016-08-30 12:24:53,099 DEBUG: Info: Time for Classification: 4.78557896614[s] +2016-08-30 12:24:53,099 DEBUG: Done: Classification +2016-08-30 12:24:53,101 DEBUG: Start: Statistic Results +2016-08-30 12:24:53,101 INFO: Accuracy :0.752380952381 +2016-08-30 12:24:53,102 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:24:53,102 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 12:24:53,102 DEBUG: Start: Determine Train/Test split +2016-08-30 12:24:53,103 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:24:53,103 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:24:53,103 DEBUG: Done: Determine Train/Test split +2016-08-30 12:24:53,103 DEBUG: Start: Classification +2016-08-30 12:24:55,948 DEBUG: Info: Time for Classification: 2.84561300278[s] +2016-08-30 12:24:55,948 DEBUG: Done: Classification +2016-08-30 12:24:55,992 DEBUG: Start: Statistic Results +2016-08-30 12:24:55,992 INFO: Accuracy :0.8 +2016-08-30 12:24:55,994 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:24:55,994 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 12:24:55,994 DEBUG: Start: Determine Train/Test split +2016-08-30 12:24:55,995 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:24:55,995 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:24:55,995 DEBUG: Done: Determine Train/Test split +2016-08-30 12:24:55,995 DEBUG: Start: Classification +2016-08-30 12:25:04,528 DEBUG: Info: Time for Classification: 8.534678936[s] +2016-08-30 12:25:04,528 DEBUG: Done: Classification +2016-08-30 12:25:04,532 DEBUG: Start: Statistic Results +2016-08-30 12:25:04,532 INFO: Accuracy :0.838095238095 +2016-08-30 12:25:04,533 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:25:04,533 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 12:25:04,533 DEBUG: Start: Determine Train/Test split +2016-08-30 12:25:04,534 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:25:04,534 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:25:04,534 DEBUG: Done: Determine Train/Test split +2016-08-30 12:25:04,534 DEBUG: Start: Classification +2016-08-30 12:25:06,746 DEBUG: Info: Time for Classification: 2.21299600601[s] +2016-08-30 12:25:06,746 DEBUG: Done: Classification +2016-08-30 12:25:06,748 DEBUG: Start: Statistic Results +2016-08-30 12:25:06,748 INFO: Accuracy :0.657142857143 +2016-08-30 12:25:06,750 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:25:06,750 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 12:25:06,750 DEBUG: Start: Determine Train/Test split +2016-08-30 12:25:06,750 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:25:06,751 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:25:06,751 DEBUG: Done: Determine Train/Test split +2016-08-30 12:25:06,751 DEBUG: Start: Classification +2016-08-30 12:28:06,160 DEBUG: Info: Time for Classification: 179.410264969[s] +2016-08-30 12:28:06,160 DEBUG: Done: Classification +2016-08-30 12:28:06,168 DEBUG: Start: Statistic Results +2016-08-30 12:28:06,168 INFO: Accuracy :0.780952380952 +2016-08-30 12:28:06,170 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 12:28:06,170 DEBUG: ### Classification - Database:MultiOmic Feature:MiRNA_ train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMPoly +2016-08-30 12:28:06,170 DEBUG: Start: Determine Train/Test split +2016-08-30 12:28:06,171 DEBUG: Info: Shape X_train:(242, 1046), Length of y_train:242 +2016-08-30 12:28:06,171 DEBUG: Info: Shape X_test:(105, 1046), Length of y_test:105 +2016-08-30 12:28:06,171 DEBUG: Done: Determine Train/Test split +2016-08-30 12:28:06,171 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-173818-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-173818-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..703a642612a36dc5a1f4ed834a022ac5a2ccd913 --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-173818-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-MultiOmic-LOG.log @@ -0,0 +1,8 @@ +2016-08-30 17:38:18,256 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 17:38:18,679 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:38:18,679 DEBUG: ### Classification - Database:MultiOmic Feature:Methyl train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 17:38:18,680 DEBUG: Start: Determine Train/Test split +2016-08-30 17:38:18,716 DEBUG: Info: Shape X_train:(242, 25978), Length of y_train:242 +2016-08-30 17:38:18,716 DEBUG: Info: Shape X_test:(105, 25978), Length of y_test:105 +2016-08-30 17:38:18,716 DEBUG: Done: Determine Train/Test split +2016-08-30 17:38:18,716 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-173904-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-173904-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-173935-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-173935-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-173953-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-173953-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Code/MonoMutliViewClassifiers/Results/20160830-174032-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log b/Code/MonoMutliViewClassifiers/Results/20160830-174032-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log new file mode 100644 index 0000000000000000000000000000000000000000..6e73e7dee599e19ccfb714465ab48b6917d7604b --- /dev/null +++ b/Code/MonoMutliViewClassifiers/Results/20160830-174032-CMultiV-Benchmark-Methyl_MiRNA__RNASeq_Clinic-Fake-LOG.log @@ -0,0 +1,63 @@ +2016-08-30 17:40:32,385 INFO: Start: Finding all available mono- & multiview algorithms +2016-08-30 17:40:32,388 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:40:32,388 DEBUG: ### Classification - Database:Fake Feature:View0 train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : Adaboost +2016-08-30 17:40:32,388 DEBUG: Start: Determine Train/Test split +2016-08-30 17:40:32,388 DEBUG: Info: Shape X_train:(210, 16), Length of y_train:210 +2016-08-30 17:40:32,388 DEBUG: Info: Shape X_test:(90, 16), Length of y_test:90 +2016-08-30 17:40:32,389 DEBUG: Done: Determine Train/Test split +2016-08-30 17:40:32,389 DEBUG: Start: Classification +2016-08-30 17:40:33,567 DEBUG: Info: Time for Classification: 1.13154196739[s] +2016-08-30 17:40:33,567 DEBUG: Done: Classification +2016-08-30 17:40:33,594 DEBUG: Start: Statistic Results +2016-08-30 17:40:33,595 INFO: Accuracy :0.0888888888889 +2016-08-30 17:40:33,596 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:40:33,597 DEBUG: ### Classification - Database:Fake Feature:View0 train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : DecisionTree +2016-08-30 17:40:33,597 DEBUG: Start: Determine Train/Test split +2016-08-30 17:40:33,597 DEBUG: Info: Shape X_train:(210, 16), Length of y_train:210 +2016-08-30 17:40:33,597 DEBUG: Info: Shape X_test:(90, 16), Length of y_test:90 +2016-08-30 17:40:33,597 DEBUG: Done: Determine Train/Test split +2016-08-30 17:40:33,598 DEBUG: Start: Classification +2016-08-30 17:40:34,354 DEBUG: Info: Time for Classification: 0.757889986038[s] +2016-08-30 17:40:34,354 DEBUG: Done: Classification +2016-08-30 17:40:34,355 DEBUG: Start: Statistic Results +2016-08-30 17:40:34,356 INFO: Accuracy :0.122222222222 +2016-08-30 17:40:34,357 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:40:34,357 DEBUG: ### Classification - Database:Fake Feature:View0 train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : KNN +2016-08-30 17:40:34,357 DEBUG: Start: Determine Train/Test split +2016-08-30 17:40:34,357 DEBUG: Info: Shape X_train:(210, 16), Length of y_train:210 +2016-08-30 17:40:34,357 DEBUG: Info: Shape X_test:(90, 16), Length of y_test:90 +2016-08-30 17:40:34,357 DEBUG: Done: Determine Train/Test split +2016-08-30 17:40:34,357 DEBUG: Start: Classification +2016-08-30 17:40:34,982 DEBUG: Info: Time for Classification: 0.624792098999[s] +2016-08-30 17:40:34,982 DEBUG: Done: Classification +2016-08-30 17:40:34,984 DEBUG: Start: Statistic Results +2016-08-30 17:40:34,985 INFO: Accuracy :0.1 +2016-08-30 17:40:34,986 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:40:34,986 DEBUG: ### Classification - Database:Fake Feature:View0 train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : RandomForest +2016-08-30 17:40:34,986 DEBUG: Start: Determine Train/Test split +2016-08-30 17:40:34,986 DEBUG: Info: Shape X_train:(210, 16), Length of y_train:210 +2016-08-30 17:40:34,986 DEBUG: Info: Shape X_test:(90, 16), Length of y_test:90 +2016-08-30 17:40:34,986 DEBUG: Done: Determine Train/Test split +2016-08-30 17:40:34,986 DEBUG: Start: Classification +2016-08-30 17:40:41,176 DEBUG: Info: Time for Classification: 6.19013905525[s] +2016-08-30 17:40:41,176 DEBUG: Done: Classification +2016-08-30 17:40:41,179 DEBUG: Start: Statistic Results +2016-08-30 17:40:41,179 INFO: Accuracy :0.1 +2016-08-30 17:40:41,180 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:40:41,180 DEBUG: ### Classification - Database:Fake Feature:View0 train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SGD +2016-08-30 17:40:41,180 DEBUG: Start: Determine Train/Test split +2016-08-30 17:40:41,181 DEBUG: Info: Shape X_train:(210, 16), Length of y_train:210 +2016-08-30 17:40:41,181 DEBUG: Info: Shape X_test:(90, 16), Length of y_test:90 +2016-08-30 17:40:41,181 DEBUG: Done: Determine Train/Test split +2016-08-30 17:40:41,181 DEBUG: Start: Classification +2016-08-30 17:40:42,661 DEBUG: Info: Time for Classification: 1.48085689545[s] +2016-08-30 17:40:42,661 DEBUG: Done: Classification +2016-08-30 17:40:42,663 DEBUG: Start: Statistic Results +2016-08-30 17:40:42,663 INFO: Accuracy :0.0888888888889 +2016-08-30 17:40:42,664 DEBUG: ### Main Programm for Classification MonoView +2016-08-30 17:40:42,664 DEBUG: ### Classification - Database:Fake Feature:View0 train_size:0.7, CrossValidation k-folds:5, cores:1, algorithm : SVMLinear +2016-08-30 17:40:42,664 DEBUG: Start: Determine Train/Test split +2016-08-30 17:40:42,664 DEBUG: Info: Shape X_train:(210, 16), Length of y_train:210 +2016-08-30 17:40:42,665 DEBUG: Info: Shape X_test:(90, 16), Length of y_test:90 +2016-08-30 17:40:42,665 DEBUG: Done: Determine Train/Test split +2016-08-30 17:40:42,665 DEBUG: Start: Classification diff --git a/Code/MonoMutliViewClassifiers/Results/poulet20160830-103357.png b/Code/MonoMutliViewClassifiers/Results/poulet20160830-103357.png new file mode 100644 index 0000000000000000000000000000000000000000..856ba33724ecee47c6f6e1a2771592f4a6f27da8 Binary files /dev/null and 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0000000000000000000000000000000000000000..856ba33724ecee47c6f6e1a2771592f4a6f27da8 Binary files /dev/null and b/Code/MonoMutliViewClassifiers/Results/poulet20160830-104001.png differ diff --git a/Code/MonoMutliViewClassifiers/__init__.py b/Code/MonoMutliViewClassifiers/__init__.py index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..980f1899d11ccdaacd612f576413a9340caecaa3 100644 --- a/Code/MonoMutliViewClassifiers/__init__.py +++ b/Code/MonoMutliViewClassifiers/__init__.py @@ -0,0 +1,2 @@ +from . import ExecClassif, ResultAnalysis, Versions, Metrics, MonoviewClassifiers, Monoview, Multiview +__all__ = ['Metrics', 'Monoview', 'MonoviewClassifiers', 'Multiview']