From 1a73b0aad76007093d6aa615b275b683a5768ee6 Mon Sep 17 00:00:00 2001
From: Akrem Sellami <akrem.sellami@lis-lab.fr>
Date: Thu, 20 Feb 2020 15:17:58 +0100
Subject: [PATCH] Upload New File
---
preprocessing_tfmri/script_batch_tfmri.py | 32 +++++++++++++++++++++++
1 file changed, 32 insertions(+)
create mode 100644 preprocessing_tfmri/script_batch_tfmri.py
diff --git a/preprocessing_tfmri/script_batch_tfmri.py b/preprocessing_tfmri/script_batch_tfmri.py
new file mode 100644
index 0000000..acf60f6
--- /dev/null
+++ b/preprocessing_tfmri/script_batch_tfmri.py
@@ -0,0 +1,32 @@
+"""
+This script demonstrates how to use firoul cluster to perform
+a set of preprocessing task on task fMRI data.
+39 subjects are available. You can download these multimodal fMRI data here:
+
+https://openneuro.org/datasets/ds001771/versions/1.0.2
+
+"""
+import os.path as op
+import subprocess
+import datetime as dt
+
+
+root_dir = op.realpath(op.dirname(__file__))
+subdir = '/hpc/banco/sellami.a/InterTVA/rsfmri'
+
+
+for s in range(3,43): # subnames index
+ if s == 36: # Avoid missing data
+
+ sub = "sub-{0:02d}".format(s)
+
+ cmd = "/hpc/soft/anaconda3/bin/python " + root_dir + "/proprecessing_tfmri.py {0}".format(sub)
+
+ log_dir = op.join(subdir, sub, 'logs')
+ std = log_dir + "/{0}_{1}_%jobid%_preprocessing.".format(sub, d_str)
+ fb_cmd = "mkdir {0} -p; frioul_batch \"{1}\" -C {2}cmd -O {3}out -E {4}err -n 17,18,19 ".format(log_dir, cmd, std, std,
+ std)
+
+ print(fb_cmd)
+ subprocess.run(fb_cmd, shell=True)
+
--
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